Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-04-01 14:36:02 (150181): Detected: vboxwrapper 26206
2025-04-01 14:36:02 (150181): Detected: BOINC client v8.0.4
2025-04-01 14:36:03 (150181): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-04-01 14:36:03 (150181): Successfully copied 'init_data.xml' to the shared directory.
2025-04-01 14:36:03 (150181): Create VM. (boinc_3641f099e49552cf, slot#5)
2025-04-01 14:36:03 (150181): Setting Memory Size for VM. (4600MB)
2025-04-01 14:36:03 (150181): Setting CPU Count for VM. (6)
2025-04-01 14:36:03 (150181): Setting Chipset Options for VM.
2025-04-01 14:36:04 (150181): Setting Graphics Controller Options for VM.
2025-04-01 14:36:04 (150181): Setting Boot Options for VM.
2025-04-01 14:36:04 (150181): Setting Network Configuration for NAT.
2025-04-01 14:36:04 (150181): Enabling VM Network Access.
2025-04-01 14:36:04 (150181): Disabling USB Support for VM.
2025-04-01 14:36:04 (150181): Disabling COM Port Support for VM.
2025-04-01 14:36:04 (150181): Disabling LPT Port Support for VM.
2025-04-01 14:36:04 (150181): Disabling Audio Support for VM.
2025-04-01 14:36:05 (150181): Disabling Clipboard Support for VM.
2025-04-01 14:36:05 (150181): Disabling Drag and Drop Support for VM.
2025-04-01 14:36:05 (150181): Adding storage controller(s) to VM.
2025-04-01 14:36:05 (150181): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-04-01 14:36:07 (150181): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-04-01 14:36:07 (150181): forwarding host port 45621 to guest port 80
2025-04-01 14:36:07 (150181): Enabling remote desktop for VM.
2025-04-01 14:36:07 (150181): Enabling shared directory for VM.
2025-04-01 14:36:07 (150181): Starting VM using VBoxManage interface. (boinc_3641f099e49552cf, slot#5)
2025-04-01 14:36:09 (150181): Successfully started VM. (PID = '150654')
2025-04-01 14:36:09 (150181): Reporting VM Process ID to BOINC.
2025-04-01 14:36:09 (150181): Guest Log: BIOS: VirtualBox 7.0.20
2025-04-01 14:36:09 (150181): Guest Log: CPUID EDX: 0x178bfbff
2025-04-01 14:36:09 (150181): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-04-01 14:36:09 (150181): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-04-01 14:36:09 (150181): VM state change detected. (old = 'poweredoff', new = 'running')
2025-04-01 14:36:09 (150181): Detected: Web Application Enabled (http://localhost:45621)
2025-04-01 14:36:09 (150181): Detected: Remote Desktop Enabled (localhost:41019)
2025-04-01 14:36:10 (150181): VM state change detected. (old = 'running', new = 'paused')
2025-04-01 14:36:29 (150181): Preference change detected
2025-04-01 14:36:29 (150181): Setting CPU throttle for VM. (50%)
2025-04-01 14:36:30 (150181): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-04-01 14:36:30 (150181): VM state change detected. (old = 'paused', new = 'running')
2025-04-01 14:36:31 (150181): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-04-01 14:36:31 (150181): Guest Log: BIOS: Booting from Hard Disk...
2025-04-01 14:36:35 (150181): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-04-01 14:36:35 (150181): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-04-01 14:36:35 (150181): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-04-01 14:36:47 (150181): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-04-01 14:36:47 (150181): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-04-01 14:37:10 (150181): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000287 main     Log opened 2025-04-01T05:36:47.732267000Z
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000488 main     OS Product: Linux
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000586 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000642 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000695 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000697 main     Process ID: 1330
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.000698 main     Package type: LINUX_64BITS_GENERIC
2025-04-01 14:37:10 (150181): Guest Log: 00:00:00.003377 main     5.2.32 r132073 started. Verbose level = 0
2025-04-01 14:37:11 (150181): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-04-01 14:37:11 (150181): Guest Log: [INFO] Mounting shared directory
2025-04-01 14:37:11 (150181): Guest Log: [INFO] Checking for init_data.xml
2025-04-01 14:38:10 (150181): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-04-01 14:38:10 (150181): Guest Log: [INFO] Detected branch: prod
2025-04-01 14:38:10 (150181): Guest Log: This is the prod version of the ATLAS job wrapper
2025-04-01 14:38:10 (150181): Guest Log: Copying input files
2025-04-01 14:38:15 (150181): Guest Log: Copied input files into RunAtlas.
2025-04-01 14:38:16 (150181): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-04-01 14:38:16 (150181): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-04-01 14:38:16 (150181): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-04-01 14:38:16 (150181): Guest Log: Further information can be found at the LHC@home message board.
2025-04-01 14:38:28 (150181): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-04-01 14:38:29 (150181): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-04-01 14:38:29 (150181): Guest Log: 2.6.3.0 1627 1 30180 144357 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-04-01 14:38:33 (150181): Guest Log: copied the webapp to /var/www
2025-04-01 14:38:33 (150181): Guest Log: ATHENA_PROC_NUMBER=6
2025-04-01 14:38:33 (150181): Guest Log: ATHENA_CORE_NUMBER=6
2025-04-01 14:38:35 (150181): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-04-01 14:38:35 (150181): Guest Log:  *** Starting ATLAS job. (PandaID=6581320742 taskID=43634882) ***
2025-04-01 14:53:01 (150181): Guest Log:  *** Job finished ***
2025-04-01 14:53:01 (150181): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:14,015 | INFO     | [data] copytool_out thread has finished
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:14,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:18,366 | INFO     | [data] queue_monitor thread has finished
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:20,050 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140305324296000)>', '<ExcThread(monitor, started 140304887830272)>']
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:20,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:20,369 | INFO     | [monitor] control thread has ended
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,056 | INFO     | all workflow threads have been joined
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,056 | INFO     | end of generic workflow (traces error code: 0)
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,057 | INFO     | traces error code: 0
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,270 [wrapper] ==== pilot stdout END ====
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,281 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,291 [wrapper] pilotpid: 6011
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:25,301 [wrapper] Pilot exit status: 0
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,717 [wrapper] pandaids: 6581320742
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,783 [wrapper] cleanup supervisor_pilot  6017 6012
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,812 [wrapper] Test setup, not cleaning
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,822 [wrapper] apfmon messages muted
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,831 [wrapper] ==== wrapper stdout END ====
2025-04-01 14:53:01 (150181): Guest Log: 2025-04-01 05:52:26,842 [wrapper] ==== wrapper stderr END ====
2025-04-01 14:53:01 (150181): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 14:53:01 (150181): Guest Log:     "exeErrorCode": 65,
2025-04-01 14:53:01 (150181): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-04-01 14:53:01 (150181): Guest Log:     "pilotErrorCode": 1305,
2025-04-01 14:53:01 (150181): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-04-01 14:53:01 (150181): Guest Log:  *** Listing of results directory ***
2025-04-01 14:53:01 (150181): Guest Log: total 3900
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Mar 31 19:12 pilot3.tar.gz
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Mar 31 19:24 queuedata.json
2025-04-01 14:53:01 (150181): Guest Log: -rwx------. 1 atlas atlas   37140 Mar 31 19:26 runpilot2-wrapper.sh
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas   17571 Apr  1 05:37 start_atlas.sh
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas  507263 Apr  1 05:37 input.tar.gz
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas    6476 Apr  1 05:37 init_data.xml
2025-04-01 14:53:01 (150181): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr  1 05:37 EVNT.43634880._000898.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas    2619 Apr  1 05:38 pandaJob.out
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas     424 Apr  1 05:38 setup.sh.local
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas  987845 Apr  1 05:43 agis_schedconf.cvmfs.json
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas 1599134 Apr  1 05:43 agis_ddmendpoints.agis.ALL.json
2025-04-01 14:53:01 (150181): Guest Log: drwx------. 4 atlas atlas    4096 Apr  1 05:44 pilot3
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas      95 Apr  1 05:51 pilot_heartbeat.json
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas    1003 Apr  1 05:51 memory_monitor_summary.json
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas   22942 Apr  1 05:51 log.43634882._010519.job.log.tgz.1
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas    8391 Apr  1 05:52 heartbeat.json
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas    4596 Apr  1 05:52 pilotlog.txt
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas   91099 Apr  1 05:52 log.43634882._010519.job.log.1
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas     188 Apr  1 05:52 output.list
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr  1 05:52 runtime_log
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas  133120 Apr  1 05:52 result.tar.gz
2025-04-01 14:53:01 (150181): Guest Log: -rw-------. 1 atlas atlas     643 Apr  1 05:52 UucMDmywZJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgaCLDmINVfrn.diag
2025-04-01 14:53:01 (150181): Guest Log: -rw-r--r--. 1 atlas atlas   10792 Apr  1 05:52 runtime_log.err
2025-04-01 14:53:01 (150181): Guest Log: Looking for outputfile HITS.43634882._010519.pool.root.1
2025-04-01 14:53:01 (150181): Guest Log: No HITS file was produced
2025-04-01 14:53:01 (150181): Guest Log: Successfully finished the ATLAS job!
2025-04-01 14:53:01 (150181): Guest Log: Copying the results back to the shared directory!
2025-04-01 14:53:02 (150181): Guest Log:  *** Contents of shared directory: ***
2025-04-01 14:53:02 (150181): Guest Log: total 337552
2025-04-01 14:53:02 (150181): Guest Log: -rw-r--r--. 1 root root 344975956 Apr  1 05:36 ATLAS.root_0
2025-04-01 14:53:02 (150181): Guest Log: -rw-r--r--. 1 root root      6476 Apr  1 05:36 init_data.xml
2025-04-01 14:53:02 (150181): Guest Log: -rw-r--r--. 1 root root    507263 Apr  1 05:36 input.tar.gz
2025-04-01 14:53:02 (150181): Guest Log: -rw-r--r--. 1 root root    133120 Apr  1  2025 result.tar.gz
2025-04-01 14:53:02 (150181): Guest Log: -rw-r--r--. 1 root root     17571 Apr  1 05:36 start_atlas.sh
2025-04-01 14:53:02 (150181): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 14:53:02 (150181): VM Completion File Detected.
2025-04-01 14:53:02 (150181): Powering off VM.
2025-04-01 14:53:03 (150181): Successfully stopped VM.
2025-04-01 14:53:03 (150181): Deregistering VM. (boinc_3641f099e49552cf, slot#5)
2025-04-01 14:53:03 (150181): Removing network bandwidth throttle group from VM.
2025-04-01 14:53:03 (150181): Removing VM from VirtualBox.
14:53:08 (150181): called boinc_finish(0)

</stderr_txt>
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