Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-31 23:40:25 (10400): Detected: vboxwrapper 26206
2025-03-31 23:40:25 (10400): Detected: BOINC client v8.0.4
2025-03-31 23:40:25 (10400): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-03-31 23:40:25 (10400): Successfully copied 'init_data.xml' to the shared directory.
2025-03-31 23:40:26 (10400): Create VM. (boinc_4b7bcf131f3c04b1, slot#3)
2025-03-31 23:40:26 (10400): Setting Memory Size for VM. (4400MB)
2025-03-31 23:40:27 (10400): Setting CPU Count for VM. (4)
2025-03-31 23:40:27 (10400): Setting Chipset Options for VM.
2025-03-31 23:40:27 (10400): Setting Graphics Controller Options for VM.
2025-03-31 23:40:28 (10400): Setting Boot Options for VM.
2025-03-31 23:40:29 (10400): Setting Network Configuration for NAT.
2025-03-31 23:40:29 (10400): Enabling VM Network Access.
2025-03-31 23:40:30 (10400): Disabling USB Support for VM.
2025-03-31 23:40:32 (10400): Disabling COM Port Support for VM.
2025-03-31 23:40:32 (10400): Disabling LPT Port Support for VM.
2025-03-31 23:40:33 (10400): Disabling Audio Support for VM.
2025-03-31 23:40:34 (10400): Disabling Clipboard Support for VM.
2025-03-31 23:40:34 (10400): Disabling Drag and Drop Support for VM.
2025-03-31 23:40:35 (10400): Adding storage controller(s) to VM.
2025-03-31 23:40:35 (10400): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-31 23:40:41 (10400): Adding VirtualBox Guest Additions to VM.
2025-03-31 23:40:42 (10400): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-31 23:40:43 (10400): forwarding host port 51989 to guest port 80
2025-03-31 23:40:43 (10400): Enabling remote desktop for VM.
2025-03-31 23:40:43 (10400): Required extension pack not installed, remote desktop not enabled.
2025-03-31 23:40:43 (10400): Enabling shared directory for VM.
2025-03-31 23:40:44 (10400): Starting VM using VBoxManage interface. (boinc_4b7bcf131f3c04b1, slot#3)
2025-03-31 23:40:50 (10400): Successfully started VM. (PID = '7188')
2025-03-31 23:40:50 (10400): Reporting VM Process ID to BOINC.
2025-03-31 23:40:50 (10400): Guest Log: BIOS: VirtualBox 7.1.6
2025-03-31 23:40:50 (10400): Guest Log: CPUID EDX: 0x178bfbff
2025-03-31 23:40:50 (10400): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-31 23:40:50 (10400): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-31 23:40:50 (10400): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-31 23:40:50 (10400): Detected: Web Application Enabled (http://localhost:51989)
2025-03-31 23:40:50 (10400): Preference change detected
2025-03-31 23:40:50 (10400): Setting CPU throttle for VM. (80%)
2025-03-31 23:40:50 (10400): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-31 23:40:52 (10400): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-31 23:40:52 (10400): Guest Log: BIOS: Booting from Hard Disk...
2025-03-31 23:40:55 (10400): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-31 23:40:55 (10400): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-31 23:40:55 (10400): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-31 23:41:01 (10400): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-31 23:41:01 (10400): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-31 23:41:07 (10400): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000167 main     Log opened 2025-03-31T23:41:05.076490000Z
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000275 main     OS Product: Linux
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000316 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000351 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000386 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000387 main     Process ID: 1327
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.000388 main     Package type: LINUX_64BITS_GENERIC
2025-03-31 23:41:07 (10400): Guest Log: 00:00:00.001430 main     5.2.32 r132073 started. Verbose level = 0
2025-03-31 23:41:08 (10400): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-31 23:41:08 (10400): Guest Log: [INFO] Mounting shared directory
2025-03-31 23:41:08 (10400): Guest Log: [INFO] Checking for init_data.xml
2025-03-31 23:41:11 (10400): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-31 23:41:11 (10400): Guest Log: [INFO] Detected branch: prod
2025-03-31 23:41:12 (10400): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-31 23:41:12 (10400): Guest Log: Copying input files
2025-03-31 23:41:13 (10400): Guest Log: Copied input files into RunAtlas.
2025-03-31 23:41:13 (10400): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-31 23:41:13 (10400): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-31 23:41:13 (10400): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-31 23:41:13 (10400): Guest Log: Further information can be found at the LHC@home message board.
2025-03-31 23:41:17 (10400): Guest Log: 00:00:10.007000 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 780 420 000ns (GuestNow=1 743 478 876 859 852 000 ns GuestLast=1 743 464 465 079 432 000 ns fSetTimeLastLoop=true )
2025-03-31 23:41:23 (10400): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-31 23:41:24 (10400): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-31 23:41:24 (10400): Guest Log: 2.6.3.0 1605 0 30164 144354 3 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-03-31 23:41:43 (10400): Guest Log: copied the webapp to /var/www
2025-03-31 23:41:43 (10400): Guest Log: ATHENA_PROC_NUMBER=4
2025-03-31 23:41:43 (10400): Guest Log: ATHENA_CORE_NUMBER=4
2025-03-31 23:41:43 (10400): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-31 23:41:43 (10400): Guest Log:  *** Starting ATLAS job. (PandaID=6581272665 taskID=43634882) ***
2025-04-01 01:20:55 (10400): Status Report: Elapsed Time: '6000.000000'
2025-04-01 01:20:55 (10400): Status Report: CPU Time: '17866.671875'
2025-04-01 03:01:00 (10400): Status Report: Elapsed Time: '12000.000000'
2025-04-01 03:01:00 (10400): Status Report: CPU Time: '39251.875000'
2025-04-01 04:41:05 (10400): Status Report: Elapsed Time: '18000.000000'
2025-04-01 04:41:05 (10400): Status Report: CPU Time: '60685.109375'
2025-04-01 04:44:21 (10400): Guest Log:  *** Job finished ***
2025-04-01 04:44:21 (10400): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:04,690 | INFO     | [data] queue_monitor thread has finished
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:11,153 | INFO     | job.realtimelogging is not enabled
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:12,155 | INFO     | [payload] run_realtimelog thread has finished
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:14,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139712434120512)>', '<ExcThread(monitor, started 139711326713600)>']
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:14,890 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:14,890 | INFO     | [monitor] control thread has ended
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,269 | INFO     | all workflow threads have been joined
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,269 | INFO     | end of generic workflow (traces error code: 0)
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,269 | INFO     | traces error code: 0
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,270 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,340 [wrapper] ==== pilot stdout END ====
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,345 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,350 [wrapper] pilotpid: 5931
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,355 [wrapper] Pilot exit status: 0
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,408 [wrapper] pandaids: 6581272665
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,443 [wrapper] cleanup supervisor_pilot 23750 5932
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,449 [wrapper] Test setup, not cleaning
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,454 [wrapper] apfmon messages muted
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,458 [wrapper] ==== wrapper stdout END ====
2025-04-01 04:44:21 (10400): Guest Log: 2025-04-01 08:44:19,462 [wrapper] ==== wrapper stderr END ====
2025-04-01 04:44:21 (10400): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 04:44:21 (10400): Guest Log:     "exeErrorCode": 0,
2025-04-01 04:44:21 (10400): Guest Log:     "exeErrorDiag": "",
2025-04-01 04:44:21 (10400): Guest Log:     "pilotErrorCode": 0,
2025-04-01 04:44:21 (10400): Guest Log:     "pilotErrorDiag": "",
2025-04-01 04:44:21 (10400): Guest Log:  *** Listing of results directory ***
2025-04-01 04:44:21 (10400): Guest Log: total 298048
2025-04-01 04:44:21 (10400): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 31 14:45 pilot3.tar.gz
2025-04-01 04:44:21 (10400): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 31 15:21 runpilot2-wrapper.sh
2025-04-01 04:44:21 (10400): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 31 15:21 queuedata.json
2025-04-01 04:44:21 (10400): Guest Log: -rwxr-xr-x. 1 atlas atlas      9192 Apr  1 03:41 init_data.xml
2025-04-01 04:44:21 (10400): Guest Log: -rwxr-xr-x. 1 atlas atlas    507256 Apr  1 03:41 input.tar.gz
2025-04-01 04:44:21 (10400): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Apr  1 03:41 start_atlas.sh
2025-04-01 04:44:21 (10400): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Apr  1 03:41 EVNT.43634880._000783.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 04:44:21 (10400): Guest Log: -rw-r--r--. 1 atlas atlas      2618 Apr  1 03:41 pandaJob.out
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas       424 Apr  1 03:41 setup.sh.local
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas    987845 Apr  1 03:42 agis_schedconf.cvmfs.json
2025-04-01 04:44:21 (10400): Guest Log: drwx------. 4 atlas atlas      4096 Apr  1 03:43 pilot3
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas 297708407 Apr  1 08:41 HITS.43634882._007643.pool.root.1
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas      1048 Apr  1 08:42 memory_monitor_summary.json
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas   1599134 Apr  1 08:42 agis_ddmendpoints.agis.ALL.json
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas    350783 Apr  1 08:42 log.43634882._007643.job.log.tgz.1
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas        95 Apr  1 08:43 pilot_heartbeat.json
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas      7691 Apr  1 08:43 heartbeat.json
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas      4474 Apr  1 08:44 pilotlog.txt
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas   1510282 Apr  1 08:44 log.43634882._007643.job.log.1
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas       357 Apr  1 08:44 output.list
2025-04-01 04:44:21 (10400): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  1 08:44 runtime_log
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas   1884160 Apr  1 08:44 result.tar.gz
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas       647 Apr  1 08:44 zVFLDmG8VJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmg3BLDm6w60Ym.diag
2025-04-01 04:44:21 (10400): Guest Log: -rw-r--r--. 1 atlas atlas     10900 Apr  1 08:44 runtime_log.err
2025-04-01 04:44:21 (10400): Guest Log: Looking for outputfile HITS.43634882._007643.pool.root.1
2025-04-01 04:44:21 (10400): Guest Log: HITS file was successfully produced
2025-04-01 04:44:21 (10400): Guest Log: -rw-------. 1 atlas atlas 297708407 Apr  1 08:41 /home/atlas/RunAtlas/HITS.43634882._007643.pool.root.1
2025-04-01 04:44:23 (10400): Guest Log: Successfully finished the ATLAS job!
2025-04-01 04:44:23 (10400): Guest Log: Copying the results back to the shared directory!
2025-04-01 04:44:23 (10400): Guest Log:  *** Contents of shared directory: ***
2025-04-01 04:44:23 (10400): Guest Log: total 626316
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root 341210526 Apr  1 03:40 ATLAS.root_0
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root 297708407 Apr  1 08:44 HITS.pool.root.1
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root      9192 Apr  1 03:40 init_data.xml
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root    507256 Apr  1 03:40 input.tar.gz
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root   1884160 Apr  1 08:44 result.tar.gz
2025-04-01 04:44:23 (10400): Guest Log: -rwxrwxrwx. 1 root root     17571 Apr  1 03:40 start_atlas.sh
2025-04-01 04:44:23 (10400): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 04:44:23 (10400): VM Completion File Detected.
2025-04-01 04:44:23 (10400): Powering off VM.
2025-04-01 04:44:24 (10400): Successfully stopped VM.
2025-04-01 04:44:24 (10400): Deregistering VM. (boinc_4b7bcf131f3c04b1, slot#3)
2025-04-01 04:44:24 (10400): Removing network bandwidth throttle group from VM.
2025-04-01 04:44:24 (10400): Removing VM from VirtualBox.
04:44:29 (10400): called boinc_finish(0)

</stderr_txt>
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