Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:53 (27485): wrapper (7.7.26015): starting
16:53:53 (27485): wrapper: running run_atlas (--nthreads 8)
[2025-03-31 16:53:53] Arguments: --nthreads 8
[2025-03-31 16:53:53] Threads: 8
[2025-03-31 16:53:53] Checking for CVMFS
[2025-03-31 16:53:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-03-31 16:53:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-03-31 16:53:54] Running cvmfs_config stat atlas.cern.ch
[2025-03-31 16:53:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-03-31 16:53:54] 2.11.2.0 3220 15905 255068 144342 0 293 14439071 18432000 11155 130560 0 60881524 99.009 138251126 35974 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-03-31 16:53:54] CVMFS is ok
[2025-03-31 16:53:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-03-31 16:53:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-03-31 16:53:54] Further information can be found at the LHC@home message board.
[2025-03-31 16:53:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-03-31 16:53:54] Checking for apptainer binary...
[2025-03-31 16:53:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-03-31 16:53:54] Running /usr/bin/apptainer --version
[2025-03-31 16:53:54] apptainer version 1.3.2-1.el7
[2025-03-31 16:53:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-03-31 16:53:55] c-211-11.aglt2.org
[2025-03-31 16:53:55] apptainer works
[2025-03-31 16:53:55] Set ATHENA_PROC_NUMBER=8
[2025-03-31 16:53:55] Set ATHENA_CORE_NUMBER=8
[2025-03-31 16:53:55] Starting ATLAS job with PandaID=6581299680
[2025-03-31 16:53:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-04-01 01:05:22]  *** The last 200 lines of the pilot log: ***
[2025-04-01 01:05:22] 2025-04-01 05:05:01,354 | INFO     | model: linear, x: [1743454779.0, 1743454840.0, 1743454901.0, 1743454962.0, 1743455023.0, 1743455084.0, 1743455145.0, 1743455206.0, 1743455267.0, 1743455328.0, 1743
[2025-04-01 01:05:22] 2025-04-01 05:05:01,354 | INFO     | sum of square deviations: 33866043466.175835
[2025-04-01 01:05:22] 2025-04-01 05:05:01,362 | INFO     | sum of deviations: 203978209779.57733
[2025-04-01 01:05:22] 2025-04-01 05:05:01,362 | INFO     | mean x: 1743469327.6903765
[2025-04-01 01:05:22] 2025-04-01 05:05:01,362 | INFO     | mean y: 2522023.6255230126
[2025-04-01 01:05:22] 2025-04-01 05:05:01,363 | INFO     | -- intersect: -10498549724.630995
[2025-04-01 01:05:22] 2025-04-01 05:05:01,363 | INFO     | intersect: -10498549724.630995
[2025-04-01 01:05:22] 2025-04-01 05:05:01,364 | INFO     | chi2: 3.459280355732721
[2025-04-01 01:05:22] 2025-04-01 05:05:01,364 | INFO     | current chi2=3.459280355732721 (change=45.41856457174664 %)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,365 | INFO     | model: linear, x: [1743455084.0, 1743455145.0, 1743455206.0, 1743455267.0, 1743455328.0, 1743455389.0, 1743455450.0, 1743455511.0, 1743455572.0, 1743455633.0, 1743
[2025-04-01 01:05:22] 2025-04-01 05:05:01,365 | INFO     | sum of square deviations: 32814358783.492603
[2025-04-01 01:05:22] 2025-04-01 05:05:01,371 | INFO     | sum of deviations: 97960240232.72507
[2025-04-01 01:05:22] 2025-04-01 05:05:01,372 | INFO     | mean x: 1743469480.192389
[2025-04-01 01:05:22] 2025-04-01 05:05:01,372 | INFO     | mean y: 2537397.1458773785
[2025-04-01 01:05:22] 2025-04-01 05:05:01,372 | INFO     | -- intersect: -5202217333.700415
[2025-04-01 01:05:22] 2025-04-01 05:05:01,372 | INFO     | intersect: -5202217333.700415
[2025-04-01 01:05:22] 2025-04-01 05:05:01,373 | INFO     | chi2: 1.7954978195798996
[2025-04-01 01:05:22] 2025-04-01 05:05:01,374 | INFO     | current chi2=1.7954978195798996 (change=48.09620398056493 %)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,374 | INFO     | model: linear, x: [1743455389.0, 1743455450.0, 1743455511.0, 1743455572.0, 1743455633.0, 1743455694.0, 1743455755.0, 1743455816.0, 1743455877.0, 1743455938.0, 1743
[2025-04-01 01:05:22] 2025-04-01 05:05:01,375 | INFO     | sum of square deviations: 31784674513.305458
[2025-04-01 01:05:22] 2025-04-01 05:05:01,381 | INFO     | sum of deviations: 30904939623.611115
[2025-04-01 01:05:22] 2025-04-01 05:05:01,382 | INFO     | mean x: 1743469632.6944444
[2025-04-01 01:05:22] 2025-04-01 05:05:01,382 | INFO     | mean y: 2547302.0042735045
[2025-04-01 01:05:22] 2025-04-01 05:05:01,382 | INFO     | -- intersect: -1692666651.2317636
[2025-04-01 01:05:22] 2025-04-01 05:05:01,382 | INFO     | intersect: -1692666651.2317636
[2025-04-01 01:05:22] 2025-04-01 05:05:01,383 | INFO     | chi2: 0.9928069303213198
[2025-04-01 01:05:22] 2025-04-01 05:05:01,383 | INFO     | current chi2=0.9928069303213198 (change=44.70575683831177 %)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,384 | INFO     | model: linear, x: [1743455694.0, 1743455755.0, 1743455816.0, 1743455877.0, 1743455938.0, 1743455999.0, 1743456060.0, 1743456121.0, 1743456182.0, 1743456243.0, 1743
[2025-04-01 01:05:22] 2025-04-01 05:05:01,384 | INFO     | sum of square deviations: 30776758093.11463
[2025-04-01 01:05:22] 2025-04-01 05:05:01,390 | INFO     | sum of deviations: 7037627105.8596
[2025-04-01 01:05:22] 2025-04-01 05:05:01,390 | INFO     | mean x: 1743469785.1965442
[2025-04-01 01:05:22] 2025-04-01 05:05:01,390 | INFO     | mean y: 2550913.2872570194
[2025-04-01 01:05:22] 2025-04-01 05:05:01,391 | INFO     | -- intersect: -396122988.0191782
[2025-04-01 01:05:22] 2025-04-01 05:05:01,391 | INFO     | intersect: -396122988.0191782
[2025-04-01 01:05:22] 2025-04-01 05:05:01,391 | INFO     | chi2: 0.9127559870167136
[2025-04-01 01:05:22] 2025-04-01 05:05:01,392 | INFO     | current chi2=0.9127559870167136 (change=8.06309271820836 %)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,392 | INFO     | left removable region: 40
[2025-04-01 01:05:22] 2025-04-01 05:05:01,392 | INFO     | model: linear, x: [1743456914.0, 1743456975.0, 1743457036.0, 1743457097.0, 1743457158.0, 1743457219.0, 1743457280.0, 1743457341.0, 1743457402.0, 1743457463.0, 1743
[2025-04-01 01:05:22] 2025-04-01 05:05:01,393 | INFO     | sum of square deviations: 25877587011.464592
[2025-04-01 01:05:22] 2025-04-01 05:05:01,398 | INFO     | sum of deviations: 13394648079.73455
[2025-04-01 01:05:22] 2025-04-01 05:05:01,398 | INFO     | mean x: 1743470212.2059495
[2025-04-01 01:05:22] 2025-04-01 05:05:01,398 | INFO     | mean y: 2559719.0251716245
[2025-04-01 01:05:22] 2025-04-01 05:05:01,398 | INFO     | -- intersect: -899888021.5486544
[2025-04-01 01:05:22] 2025-04-01 05:05:01,398 | INFO     | intersect: -899888021.5486544
[2025-04-01 01:05:22] 2025-04-01 05:05:01,399 | INFO     | chi2: 0.005135071517190864
[2025-04-01 01:05:22] 2025-04-01 05:05:01,399 | INFO     | -- intersect: -899888021.5486544
[2025-04-01 01:05:22] 2025-04-01 05:05:01,400 | INFO     | current memory leak: 0.52 B/s (using 437 data points, chi2=0.01)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,404 | INFO     | ..............................
[2025-04-01 01:05:22] 2025-04-01 05:05:01,404 | INFO     | . Timing measurements:
[2025-04-01 01:05:22] 2025-04-01 05:05:01,404 | INFO     | . get job = 0 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . initial setup = 2 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . payload setup = 5 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . stage-in = 0 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . payload execution = 29416 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . stage-out = 2 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,405 | INFO     | . log creation = 0 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,406 | INFO     | ..............................
[2025-04-01 01:05:22] 2025-04-01 05:05:01,713 | INFO     | 
[2025-04-01 01:05:22] 2025-04-01 05:05:01,713 | INFO     | job summary report
[2025-04-01 01:05:22] 2025-04-01 05:05:01,713 | INFO     | --------------------------------------------------
[2025-04-01 01:05:22] 2025-04-01 05:05:01,713 | INFO     | PanDA job id: 6581299680
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | task id: 43634882
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | errors: (none)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | status: LOG_TRANSFER = DONE 
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | pilot state: finished 
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | transexitcode: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | exeerrorcode: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | exeerrordiag: 
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | exitcode: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:01,714 | INFO     | exitmsg: OK
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | cpuconsumptiontime: 102892 s
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | nevents: 400
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | neventsw: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | pid: 41765
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | pgrp: 41765
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | corecount: 8
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | event service: False
[2025-04-01 01:05:22] 2025-04-01 05:05:01,715 | INFO     | sizes: {0: 2410237, 1: 2411093, 6: 2411299, 12: 2411327, 29426: 2448738, 29429: 2457679, 29431: 2457863, 29439: 2458033}
[2025-04-01 01:05:22] 2025-04-01 05:05:01,716 | INFO     | --------------------------------------------------
[2025-04-01 01:05:22] 2025-04-01 05:05:01,716 | INFO     | 
[2025-04-01 01:05:22] 2025-04-01 05:05:01,716 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-04-01 01:05:22] 2025-04-01 05:05:01,743 | WARNING  | process 41765 can no longer be monitored (due to stat problems) - aborting
[2025-04-01 01:05:22] 2025-04-01 05:05:01,744 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6581299680/memory_monitor_summary.json (trf name=prmon)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,745 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6581299680/memory_monitor_summary.json (trf name=prmon)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,747 | INFO     | queue jobs had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,747 | INFO     | queue payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,747 | INFO     | queue data_in had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,747 | INFO     | queue data_out had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,748 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue completed_jobids has 1 job(s)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,749 | INFO     | queue messages had 0 job(s) [purged]
[2025-04-01 01:05:22] 2025-04-01 05:05:01,750 | INFO     | job 6581299680 has completed (purged errors)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,750 | INFO     | overall cleanup function is called
[2025-04-01 01:05:22] 2025-04-01 05:05:01,755 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/2/PanDA_Pilot-6581299680/log.EVNTtoHITS) since it has not been created yet
[2025-04-01 01:05:22] 2025-04-01 05:05:01,756 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/2/PanDA_Pilot-6581299680/payload.stdout) since it has not been created yet
[2025-04-01 01:05:22] 2025-04-01 05:05:01,756 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-04-01 01:05:22] 2025-04-01 05:05:01,783 | INFO     | sufficient remaining disk space (55734960128 B)
[2025-04-01 01:05:22] 2025-04-01 05:05:01,784 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-04-01 01:05:22] 2025-04-01 05:05:01,784 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-6581299680/HITS.43634882._009441.pool.root.1 since it does not exist
[2025-04-01 01:05:22] 2025-04-01 05:05:02,122 | INFO     | number of running child processes to parent process 41765: 1
[2025-04-01 01:05:22] 2025-04-01 05:05:02,123 | INFO     | maximum number of monitored processes: 6
[2025-04-01 01:05:22] 2025-04-01 05:05:02,123 | INFO     | aborting job monitoring since job object (job id=6581299680) has expired
[2025-04-01 01:05:22] 2025-04-01 05:05:02,768 | INFO     | --- collectZombieJob: --- 10, [41765]
[2025-04-01 01:05:22] 2025-04-01 05:05:02,773 | INFO     | zombie collector waiting for pid 41765
[2025-04-01 01:05:22] 2025-04-01 05:05:02,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-04-01 01:05:22] 2025-04-01 05:05:02,773 | INFO     | collected zombie processes
[2025-04-01 01:05:22] 2025-04-01 05:05:02,773 | INFO     | will attempt to kill all subprocesses of pid=41765
[2025-04-01 01:05:22] 2025-04-01 05:05:03,102 | INFO     | process IDs to be killed: [41765] (in reverse order)
[2025-04-01 01:05:22] 2025-04-01 05:05:03,223 | WARNING  | found no corresponding commands to process id(s)
[2025-04-01 01:05:22] 2025-04-01 05:05:03,224 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-04-01 01:05:22] 2025-04-01 05:05:03,238 | INFO     | did not find any defunct processes belonging to 41765
[2025-04-01 01:05:22] 2025-04-01 05:05:03,251 | INFO     | did not find any defunct processes belonging to 41765
[2025-04-01 01:05:22] 2025-04-01 05:05:03,251 | INFO     | ready for new job
[2025-04-01 01:05:22] 2025-04-01 05:05:03,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-04-01 01:05:22] 2025-04-01 05:05:03,255 | INFO     | ***************************************
[2025-04-01 01:05:22] 2025-04-01 05:05:03,256 | INFO     | ***  PanDA Pilot version 3.10.0.24  ***
[2025-04-01 01:05:22] 2025-04-01 05:05:03,256 | INFO     | ***************************************
[2025-04-01 01:05:22] 2025-04-01 05:05:03,256 | INFO     | 
[2025-04-01 01:05:22] 2025-04-01 05:05:03,259 | INFO     | architecture information:
[2025-04-01 01:05:22] 2025-04-01 05:05:03,260 | INFO     | executing command: cat /etc/os-release
[2025-04-01 01:05:22] 2025-04-01 05:05:03,288 | INFO     | cat /etc/os-release:
[2025-04-01 01:05:22] NAME="CentOS Linux"
[2025-04-01 01:05:22] VERSION="7 (Core)"
[2025-04-01 01:05:22] ID="centos"
[2025-04-01 01:05:22] ID_LIKE="rhel fedora"
[2025-04-01 01:05:22] VERSION_ID="7"
[2025-04-01 01:05:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-04-01 01:05:22] ANSI_COLOR="0;31"
[2025-04-01 01:05:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-04-01 01:05:22] HOME_URL="https://www.centos.org/"
[2025-04-01 01:05:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-04-01 01:05:22] 
[2025-04-01 01:05:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-04-01 01:05:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-04-01 01:05:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-04-01 01:05:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-04-01 01:05:22] 
[2025-04-01 01:05:22] 2025-04-01 05:05:03,289 | INFO     | ***************************************
[2025-04-01 01:05:22] 2025-04-01 05:05:03,792 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-04-01 01:05:22] 2025-04-01 05:05:03,814 | INFO     | sufficient remaining disk space (55738105856 B)
[2025-04-01 01:05:22] 2025-04-01 05:05:03,814 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-04-01 01:05:22] 2025-04-01 05:05:03,814 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-04-01 01:05:22] 2025-04-01 05:05:03,815 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-04-01 01:05:22] 2025-04-01 05:05:03,815 | INFO     | aborting loop
[2025-04-01 01:05:22] 2025-04-01 05:05:03,880 | INFO     | all payload control threads have been joined
[2025-04-01 01:05:22] 2025-04-01 05:05:03,978 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-04-01 01:05:22] 2025-04-01 05:05:04,494 | INFO     | all data control threads have been joined
[2025-04-01 01:05:22] 2025-04-01 05:05:04,671 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-04-01 01:05:22] 2025-04-01 05:05:04,818 | INFO     | found 0 job(s) in 20 queues
[2025-04-01 01:05:22] 2025-04-01 05:05:04,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-04-01 01:05:22] 2025-04-01 05:05:04,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-04-01 01:05:22] 2025-04-01 05:05:04,820 | INFO     | [job] retrieve thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:04,821 | INFO     | [job] job monitor thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:04,886 | INFO     | [payload] control thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:04,896 | INFO     | [payload] failed_post thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,012 | INFO     | [data] copytool_in thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,067 | INFO     | all job control threads have been joined
[2025-04-01 01:05:22] 2025-04-01 05:05:05,496 | INFO     | [data] control thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,562 | INFO     | [job] create_data_payload thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,563 | INFO     | [payload] validate_pre thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,919 | INFO     | [payload] execute_payloads thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:05,921 | INFO     | [job] validate thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:06,017 | INFO     | [payload] validate_post thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:06,073 | INFO     | [job] control thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:06,581 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-04-01 01:05:22] 2025-04-01 05:05:06,677 | INFO     | [data] copytool_out thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:07,587 | INFO     | [job] queue monitor thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:07,984 | INFO     | [data] queue_monitor thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:14,831 | INFO     | job.realtimelogging is not enabled
[2025-04-01 01:05:22] 2025-04-01 05:05:15,837 | INFO     | [payload] run_realtimelog thread has finished
[2025-04-01 01:05:22] 2025-04-01 05:05:17,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243448436544)>', '<ExcThread(monitor, started 140242862454528)>']
[2025-04-01 01:05:22] 2025-04-01 05:05:17,880 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-04-01 01:05:22] 2025-04-01 05:05:17,880 | INFO     | [monitor] control thread has ended
[2025-04-01 01:05:22] 2025-04-01 05:05:22,397 | INFO     | all workflow threads have been joined
[2025-04-01 01:05:22] 2025-04-01 05:05:22,397 | INFO     | end of generic workflow (traces error code: 0)
[2025-04-01 01:05:22] 2025-04-01 05:05:22,398 | INFO     | traces error code: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:22,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-04-01 01:05:22] 2025-04-01 05:05:22,667 [wrapper] ==== pilot stdout END ====
[2025-04-01 01:05:22] 2025-04-01 05:05:22,671 [wrapper] ==== wrapper stdout RESUME ====
[2025-04-01 01:05:22] 2025-04-01 05:05:22,675 [wrapper] pilotpid: 33915
[2025-04-01 01:05:22] 2025-04-01 05:05:22,680 [wrapper] Pilot exit status: 0
[2025-04-01 01:05:22] 2025-04-01 05:05:22,696 [wrapper] pandaids: 6581299680
[2025-04-01 01:05:22] 2025-04-01 05:05:22,793 [wrapper] cleanup supervisor_pilot 28485 33916
[2025-04-01 01:05:22] 2025-04-01 05:05:22,796 [wrapper] Test setup, not cleaning
[2025-04-01 01:05:22] 2025-04-01 05:05:22,800 [wrapper] apfmon messages muted
[2025-04-01 01:05:22] 2025-04-01 05:05:22,803 [wrapper] ==== wrapper stdout END ====
[2025-04-01 01:05:22] 2025-04-01 05:05:22,807 [wrapper] ==== wrapper stderr END ====
[2025-04-01 01:05:22]  *** Error codes and diagnostics ***
[2025-04-01 01:05:22]     "exeErrorCode": 0,
[2025-04-01 01:05:22]     "exeErrorDiag": "",
[2025-04-01 01:05:22]     "pilotErrorCode": 0,
[2025-04-01 01:05:22]     "pilotErrorDiag": "",
[2025-04-01 01:05:22]  *** Listing of results directory ***
[2025-04-01 01:05:22] total 634780
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas    494584 Mar 31 13:39 pilot3.tar.gz
[2025-04-01 01:05:22] -rwx------ 1 boincer umatlas     37140 Mar 31 13:47 runpilot2-wrapper.sh
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas      5112 Mar 31 13:47 queuedata.json
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas       100 Mar 31 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-04-01 01:05:22] -rwxr-xr-x 1 boincer umatlas      7986 Mar 31 16:53 run_atlas
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas       105 Mar 31 16:53 job.xml
[2025-04-01 01:05:22] -rw-r--r-- 2 boincer umatlas 341451287 Mar 31 16:53 EVNT.43634880._000855.pool.root.1
[2025-04-01 01:05:22] -rw-r--r-- 2 boincer umatlas     17571 Mar 31 16:53 start_atlas.sh
[2025-04-01 01:05:22] drwxrwx--x 2 boincer umatlas      4096 Mar 31 16:53 shared
[2025-04-01 01:05:22] -rw-r--r-- 2 boincer umatlas    507262 Mar 31 16:53 input.tar.gz
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas         0 Mar 31 16:53 boinc_lockfile
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas      2617 Mar 31 16:53 pandaJob.out
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas       467 Mar 31 16:53 setup.sh.local
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas    987821 Mar 31 16:54 agis_schedconf.cvmfs.json
[2025-04-01 01:05:22] drwx------ 4 boincer umatlas      4096 Mar 31 16:54 pilot3
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas      6132 Apr  1 01:02 init_data.xml
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas 297022817 Apr  1 01:03 HITS.43634882._009441.pool.root.1
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas       531 Apr  1 01:03 boinc_task_state.xml
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas      1060 Apr  1 01:04 memory_monitor_summary.json
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas   1599134 Apr  1 01:04 agis_ddmendpoints.agis.ALL.json
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas    576465 Apr  1 01:04 log.43634882._009441.job.log.tgz.1
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas        95 Apr  1 01:04 pilot_heartbeat.json
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas        29 Apr  1 01:04 wrapper_checkpoint.txt
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas      8192 Apr  1 01:04 boinc_mmap_file
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas      7747 Apr  1 01:05 heartbeat.json
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas      4291 Apr  1 01:05 pilotlog.txt
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas   3277859 Apr  1 01:05 log.43634882._009441.job.log.1
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas       357 Apr  1 01:05 output.list
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas       620 Apr  1 01:05 runtime_log
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas   3870720 Apr  1 01:05 result.tar.gz
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas     11420 Apr  1 01:05 runtime_log.err
[2025-04-01 01:05:22] -rw------- 1 boincer umatlas       663 Apr  1 01:05 jM9MDmJPYJ7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmUOCLDmNSiJbm.diag
[2025-04-01 01:05:22] -rw-r--r-- 1 boincer umatlas     22099 Apr  1 01:05 stderr.txt
[2025-04-01 01:05:23] HITS file was successfully produced:
[2025-04-01 01:05:23] -rw------- 1 boincer umatlas 297022817 Apr  1 01:03 shared/HITS.pool.root.1
[2025-04-01 01:05:23]  *** Contents of shared directory: ***
[2025-04-01 01:05:23] total 627816
[2025-04-01 01:05:23] -rw-r--r-- 2 boincer umatlas 341451287 Mar 31 16:53 ATLAS.root_0
[2025-04-01 01:05:23] -rw-r--r-- 2 boincer umatlas     17571 Mar 31 16:53 start_atlas.sh
[2025-04-01 01:05:23] -rw-r--r-- 2 boincer umatlas    507262 Mar 31 16:53 input.tar.gz
[2025-04-01 01:05:23] -rw------- 1 boincer umatlas 297022817 Apr  1 01:03 HITS.pool.root.1
[2025-04-01 01:05:23] -rw------- 1 boincer umatlas   3870720 Apr  1 01:05 result.tar.gz
01:05:24 (27485): run_atlas exited; CPU time 102537.772055
01:05:24 (27485): called boinc_finish(0)

</stderr_txt>
]]>

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