Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-31 21:51:23 (3948): Detected: vboxwrapper 26206
2025-03-31 21:51:23 (3948): Detected: BOINC client v7.16.20
2025-03-31 21:51:23 (3948): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-03-31 21:51:24 (3948): Successfully copied 'init_data.xml' to the shared directory.
2025-03-31 21:51:24 (3948): Create VM. (boinc_8b1bc941ba8bf20b, slot#8)
2025-03-31 21:51:25 (3948): Setting Memory Size for VM. (4800MB)
2025-03-31 21:51:25 (3948): Setting CPU Count for VM. (8)
2025-03-31 21:51:25 (3948): Setting Chipset Options for VM.
2025-03-31 21:51:25 (3948): Setting Graphics Controller Options for VM.
2025-03-31 21:51:26 (3948): Setting Boot Options for VM.
2025-03-31 21:51:26 (3948): Setting Network Configuration for NAT.
2025-03-31 21:51:26 (3948): Enabling VM Network Access.
2025-03-31 21:51:27 (3948): Disabling USB Support for VM.
2025-03-31 21:51:27 (3948): Disabling COM Port Support for VM.
2025-03-31 21:51:27 (3948): Disabling LPT Port Support for VM.
2025-03-31 21:51:27 (3948): Disabling Audio Support for VM.
2025-03-31 21:51:28 (3948): Disabling Clipboard Support for VM.
2025-03-31 21:51:28 (3948): Disabling Drag and Drop Support for VM.
2025-03-31 21:51:28 (3948): Adding storage controller(s) to VM.
2025-03-31 21:51:28 (3948): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-31 21:51:29 (3948): Adding VirtualBox Guest Additions to VM.
2025-03-31 21:51:29 (3948): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-31 21:51:30 (3948): forwarding host port 61110 to guest port 80
2025-03-31 21:51:30 (3948): Enabling remote desktop for VM.
2025-03-31 21:51:30 (3948): Required extension pack not installed, remote desktop not enabled.
2025-03-31 21:51:30 (3948): Enabling shared directory for VM.
2025-03-31 21:51:31 (3948): Starting VM using VBoxManage interface. (boinc_8b1bc941ba8bf20b, slot#8)
2025-03-31 21:51:35 (3948): Successfully started VM. (PID = '18256')
2025-03-31 21:51:35 (3948): Reporting VM Process ID to BOINC.
2025-03-31 21:51:35 (3948): Guest Log: BIOS: VirtualBox 6.1.50
2025-03-31 21:51:35 (3948): Guest Log: CPUID EDX: 0x178bfbff
2025-03-31 21:51:35 (3948): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-31 21:51:35 (3948): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-31 21:51:35 (3948): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-31 21:51:35 (3948): Detected: Web Application Enabled (http://localhost:61110)
2025-03-31 21:51:35 (3948): Preference change detected
2025-03-31 21:51:35 (3948): Setting CPU throttle for VM. (100%)
2025-03-31 21:51:35 (3948): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-31 21:51:37 (3948): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-31 21:51:37 (3948): Guest Log: BIOS: Booting from Hard Disk...
2025-03-31 21:51:40 (3948): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-31 21:51:40 (3948): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-31 21:51:40 (3948): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-31 21:51:48 (3948): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-31 21:51:48 (3948): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-31 21:51:54 (3948): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000170 main     Log opened 2025-03-31T21:51:52.650634000Z
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000267 main     OS Product: Linux
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000290 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000307 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000324 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000325 main     Process ID: 1364
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.000325 main     Package type: LINUX_64BITS_GENERIC
2025-03-31 21:51:54 (3948): Guest Log: 00:00:00.001141 main     5.2.32 r132073 started. Verbose level = 0
2025-03-31 21:51:54 (3948): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-31 21:51:54 (3948): Guest Log: [INFO] Mounting shared directory
2025-03-31 21:51:54 (3948): Guest Log: [INFO] Checking for init_data.xml
2025-03-31 21:51:56 (3948): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-31 21:51:56 (3948): Guest Log: [INFO] Detected branch: prod
2025-03-31 21:51:56 (3948): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-31 21:51:56 (3948): Guest Log: Copying input files
2025-03-31 21:51:58 (3948): Guest Log: Copied input files into RunAtlas.
2025-03-31 21:51:58 (3948): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-31 21:51:58 (3948): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-31 21:51:58 (3948): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-31 21:51:58 (3948): Guest Log: Further information can be found at the LHC@home message board.
2025-03-31 21:52:04 (3948): Guest Log: 00:00:10.004133 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 079 213 000ns (GuestNow=1 743 450 723 575 172 000 ns GuestLast=1 743 457 912 654 385 000 ns fSetTimeLastLoop=true )
2025-03-31 21:52:05 (3948): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-31 21:52:06 (3948): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-31 21:52:06 (3948): Guest Log: 2.6.3.0 1641 0 32212 144341 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-03-31 21:52:07 (3948): Guest Log: copied the webapp to /var/www
2025-03-31 21:52:07 (3948): Guest Log: ATHENA_PROC_NUMBER=8
2025-03-31 21:52:07 (3948): Guest Log: ATHENA_CORE_NUMBER=8
2025-03-31 21:52:07 (3948): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-31 21:52:07 (3948): Guest Log:  *** Starting ATLAS job. (PandaID=6571409907 taskID=43428187) ***
2025-03-31 23:31:40 (3948): Status Report: Elapsed Time: '6000.000000'
2025-03-31 23:31:40 (3948): Status Report: CPU Time: '33970.359375'
2025-04-01 01:11:46 (3948): Status Report: Elapsed Time: '12000.000000'
2025-04-01 01:11:46 (3948): Status Report: CPU Time: '81739.453125'
2025-04-01 02:51:52 (3948): Status Report: Elapsed Time: '18000.000000'
2025-04-01 02:51:52 (3948): Status Report: CPU Time: '129553.671875'
2025-04-01 04:31:58 (3948): Status Report: Elapsed Time: '24000.000000'
2025-04-01 04:31:58 (3948): Status Report: CPU Time: '177372.593750'
2025-04-01 06:12:03 (3948): Status Report: Elapsed Time: '30000.000000'
2025-04-01 06:12:03 (3948): Status Report: CPU Time: '225208.953125'
2025-04-01 07:52:09 (3948): Status Report: Elapsed Time: '36000.000000'
2025-04-01 07:52:09 (3948): Status Report: CPU Time: '273058.500000'
2025-04-01 09:32:15 (3948): Status Report: Elapsed Time: '42000.000000'
2025-04-01 09:32:15 (3948): Status Report: CPU Time: '320895.500000'
2025-04-01 11:12:21 (3948): Status Report: Elapsed Time: '48000.000000'
2025-04-01 11:12:21 (3948): Status Report: CPU Time: '368714.750000'
2025-04-01 11:59:48 (3948): Guest Log:  *** Job finished ***
2025-04-01 11:59:48 (3948): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:22,952 | INFO     | [data] control thread has finished
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:23,092 | INFO     | [payload] control thread has finished
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:24,815 | INFO     | [data] queue_monitor thread has finished
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:25,374 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091390523200)>', '<ExcThread(monitor, started 140090651158272)>']
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:26,237 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:26,237 | INFO     | [monitor] control thread has ended
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,381 | INFO     | all workflow threads have been joined
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,381 | INFO     | end of generic workflow (traces error code: 0)
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,381 | INFO     | traces error code: 0
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,381 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,533 [wrapper] ==== pilot stdout END ====
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,539 [wrapper] ==== wrapper stdout RESUME ====
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,545 [wrapper] pilotpid: 6005
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,551 [wrapper] Pilot exit status: 0
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,579 [wrapper] pandaids: 6571409907
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,615 [wrapper] cleanup supervisor_pilot 15571 6006
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,620 [wrapper] Test setup, not cleaning
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,625 [wrapper] apfmon messages muted
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,631 [wrapper] ==== wrapper stdout END ====
2025-04-01 11:59:48 (3948): Guest Log: 2025-04-01 09:59:30,635 [wrapper] ==== wrapper stderr END ====
2025-04-01 11:59:48 (3948): Guest Log:  *** Error codes and diagnostics ***
2025-04-01 11:59:48 (3948): Guest Log:     "exeErrorCode": 0,
2025-04-01 11:59:48 (3948): Guest Log:     "exeErrorDiag": "",
2025-04-01 11:59:48 (3948): Guest Log:     "pilotErrorCode": 0,
2025-04-01 11:59:48 (3948): Guest Log:     "pilotErrorDiag": "",
2025-04-01 11:59:48 (3948): Guest Log:  *** Listing of results directory ***
2025-04-01 11:59:48 (3948): Guest Log: total 621636
2025-04-01 11:59:48 (3948): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 24 13:15 pilot3.tar.gz
2025-04-01 11:59:48 (3948): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 24 13:26 queuedata.json
2025-04-01 11:59:48 (3948): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 24 13:29 runpilot2-wrapper.sh
2025-04-01 11:59:48 (3948): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Mar 31 19:51 start_atlas.sh
2025-04-01 11:59:48 (3948): Guest Log: -rwxr-xr-x. 1 atlas atlas    507438 Mar 31 19:51 input.tar.gz
2025-04-01 11:59:48 (3948): Guest Log: -rwxr-xr-x. 1 atlas atlas      8795 Mar 31 19:51 init_data.xml
2025-04-01 11:59:48 (3948): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 31 19:51 EVNT.43428183._000002.pool.root.1 -> /data/./ATLAS.root_0
2025-04-01 11:59:48 (3948): Guest Log: -rw-r--r--. 1 atlas atlas      2810 Mar 31 19:52 pandaJob.out
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas       424 Mar 31 19:52 setup.sh.local
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas    987845 Mar 31 19:52 agis_schedconf.cvmfs.json
2025-04-01 11:59:48 (3948): Guest Log: drwx------. 4 atlas atlas      4096 Mar 31 19:52 pilot3
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas 615183946 Apr  1 09:58 HITS.43428187._000013.pool.root.1
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas        95 Apr  1 09:59 pilot_heartbeat.json
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas      1045 Apr  1 09:59 memory_monitor_summary.json
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas   1599134 Apr  1 09:59 agis_ddmendpoints.agis.ALL.json
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas   2001790 Apr  1 09:59 log.43428187._000013.job.log.tgz.1
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas     27765 Apr  1 09:59 heartbeat.json
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas      4279 Apr  1 09:59 pilotlog.txt
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas   6779162 Apr  1 09:59 log.43428187._000013.job.log.1
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas       353 Apr  1 09:59 output.list
2025-04-01 11:59:48 (3948): Guest Log: -rw-r--r--. 1 atlas atlas       620 Apr  1 09:59 runtime_log
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas   8816640 Apr  1 09:59 result.tar.gz
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas       663 Apr  1 09:59 zLxKDma2wG7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm1RALDmmXPkDo.diag
2025-04-01 11:59:48 (3948): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Apr  1 09:59 runtime_log.err
2025-04-01 11:59:48 (3948): Guest Log: Looking for outputfile HITS.43428187._000013.pool.root.1
2025-04-01 11:59:48 (3948): Guest Log: HITS file was successfully produced
2025-04-01 11:59:48 (3948): Guest Log: -rw-------. 1 atlas atlas 615183946 Apr  1 09:58 /home/atlas/RunAtlas/HITS.43428187._000013.pool.root.1
2025-04-01 11:59:51 (3948): Guest Log: Successfully finished the ATLAS job!
2025-04-01 11:59:51 (3948): Guest Log: Copying the results back to the shared directory!
2025-04-01 11:59:51 (3948): Guest Log:  *** Contents of shared directory: ***
2025-04-01 11:59:51 (3948): Guest Log: total 900096
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root 297152221 Mar 31 19:51 ATLAS.root_0
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root 615183946 Apr  1  2025 HITS.pool.root.1
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root      8795 Mar 31 19:51 init_data.xml
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root    507438 Mar 31 05:56 input.tar.gz
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root   8816640 Apr  1  2025 result.tar.gz
2025-04-01 11:59:51 (3948): Guest Log: -rwxrwxrwx. 1 root root     17571 Mar 31 05:56 start_atlas.sh
2025-04-01 11:59:51 (3948): Guest Log:  *** Success! Shutting down the machine. ***
2025-04-01 11:59:52 (3948): VM Completion File Detected.
2025-04-01 11:59:52 (3948): Powering off VM.
2025-04-01 11:59:53 (3948): Successfully stopped VM.
2025-04-01 11:59:53 (3948): Deregistering VM. (boinc_8b1bc941ba8bf20b, slot#8)
2025-04-01 11:59:53 (3948): Removing network bandwidth throttle group from VM.
2025-04-01 11:59:54 (3948): Removing VM from VirtualBox.
11:59:59 (3948): called boinc_finish(0)

</stderr_txt>
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