Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-30 18:35:02 (15280): Detected: vboxwrapper 26206
2025-03-30 18:35:02 (15280): Detected: BOINC client v8.0.2
2025-03-30 18:35:02 (15280): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-03-30 18:35:02 (15280): Successfully copied 'init_data.xml' to the shared directory.
2025-03-30 18:35:03 (15280): Create VM. (boinc_37402f5cc00c224e, slot#3)
2025-03-30 18:35:03 (15280): Setting Memory Size for VM. (4400MB)
2025-03-30 18:35:04 (15280): Setting CPU Count for VM. (4)
2025-03-30 18:35:04 (15280): Setting Chipset Options for VM.
2025-03-30 18:35:04 (15280): Setting Graphics Controller Options for VM.
2025-03-30 18:35:04 (15280): Setting Boot Options for VM.
2025-03-30 18:35:05 (15280): Setting Network Configuration for NAT.
2025-03-30 18:35:05 (15280): Enabling VM Network Access.
2025-03-30 18:35:05 (15280): Disabling USB Support for VM.
2025-03-30 18:35:05 (15280): Disabling COM Port Support for VM.
2025-03-30 18:35:06 (15280): Disabling LPT Port Support for VM.
2025-03-30 18:35:06 (15280): Disabling Audio Support for VM.
2025-03-30 18:35:06 (15280): Disabling Clipboard Support for VM.
2025-03-30 18:35:07 (15280): Disabling Drag and Drop Support for VM.
2025-03-30 18:35:07 (15280): Adding storage controller(s) to VM.
2025-03-30 18:35:07 (15280): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-30 18:35:08 (15280): Adding VirtualBox Guest Additions to VM.
2025-03-30 18:35:08 (15280): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-30 18:35:08 (15280): forwarding host port 62405 to guest port 80
2025-03-30 18:35:08 (15280): Enabling remote desktop for VM.
2025-03-30 18:35:09 (15280): Required extension pack not installed, remote desktop not enabled.
2025-03-30 18:35:09 (15280): Enabling shared directory for VM.
2025-03-30 18:35:09 (15280): Starting VM using VBoxManage interface. (boinc_37402f5cc00c224e, slot#3)
2025-03-30 18:35:13 (15280): Successfully started VM. (PID = '13236')
2025-03-30 18:35:13 (15280): Reporting VM Process ID to BOINC.
2025-03-30 18:35:13 (15280): Guest Log: BIOS: VirtualBox 6.1.34
2025-03-30 18:35:13 (15280): Guest Log: CPUID EDX: 0x178bfbff
2025-03-30 18:35:13 (15280): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-30 18:35:13 (15280): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-30 18:35:13 (15280): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-30 18:35:13 (15280): Detected: Web Application Enabled (http://localhost:62405)
2025-03-30 18:35:13 (15280): Preference change detected
2025-03-30 18:35:13 (15280): Setting CPU throttle for VM. (100%)
2025-03-30 18:35:14 (15280): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-30 18:35:15 (15280): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-30 18:35:15 (15280): Guest Log: BIOS: Booting from Hard Disk...
2025-03-30 18:35:18 (15280): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-30 18:35:18 (15280): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-30 18:35:18 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-30 18:35:19 (15280): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-30 18:35:25 (15280): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-30 18:35:25 (15280): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-30 18:35:31 (15280): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-30 18:35:31 (15280): Guest Log: 00:00:00.000205 main     Log opened 2025-03-30T18:35:29.782813000Z
2025-03-30 18:35:31 (15280): Guest Log: 00:00:00.000305 main     OS Product: Linux
2025-03-30 18:35:31 (15280): Guest Log: 00:00:00.000331 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-30 18:35:31 (15280): Guest Log: 00:00:00.000352 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-30 18:35:31 (15280): Guest Log: 00:00:00.000374 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-30 18:35:32 (15280): Guest Log: 00:00:00.000375 main     Process ID: 1300
2025-03-30 18:35:32 (15280): Guest Log: 00:00:00.000375 main     Package type: LINUX_64BITS_GENERIC
2025-03-30 18:35:32 (15280): Guest Log: 00:00:00.001592 main     5.2.32 r132073 started. Verbose level = 0
2025-03-30 18:35:32 (15280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-30 18:35:32 (15280): Guest Log: [INFO] Mounting shared directory
2025-03-30 18:35:32 (15280): Guest Log: [INFO] Checking for init_data.xml
2025-03-30 18:35:35 (15280): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-30 18:35:35 (15280): Guest Log: [INFO] Detected branch: prod
2025-03-30 18:35:35 (15280): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-30 18:35:35 (15280): Guest Log: Copying input files
2025-03-30 18:35:37 (15280): Guest Log: Copied input files into RunAtlas.
2025-03-30 18:35:38 (15280): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-30 18:35:38 (15280): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-30 18:35:38 (15280): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-30 18:35:38 (15280): Guest Log: Further information can be found at the LHC@home message board.
2025-03-30 18:35:42 (15280): Guest Log: 00:00:10.013405 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 259 892 000ns (GuestNow=1 743 352 541 526 010 000 ns GuestLast=1 743 359 729 785 902 000 ns fSetTimeLastLoop=true )
2025-03-30 18:35:47 (15280): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-30 18:35:48 (15280): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-30 18:35:48 (15280): Guest Log: 2.6.3.0 1576 0 32052 144302 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-03-30 18:35:48 (15280): Guest Log: copied the webapp to /var/www
2025-03-30 18:35:49 (15280): Guest Log: ATHENA_PROC_NUMBER=4
2025-03-30 18:35:49 (15280): Guest Log: ATHENA_CORE_NUMBER=4
2025-03-30 18:35:49 (15280): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-30 18:35:49 (15280): Guest Log:  *** Starting ATLAS job. (PandaID=6565315282 taskID=43634914) ***
2025-03-30 20:15:21 (15280): Status Report: Elapsed Time: '6000.000000'
2025-03-30 20:15:21 (15280): Status Report: CPU Time: '17883.250000'
2025-03-30 21:55:29 (15280): Status Report: Elapsed Time: '12000.000000'
2025-03-30 21:55:29 (15280): Status Report: CPU Time: '39366.515625'
2025-03-30 23:35:38 (15280): Status Report: Elapsed Time: '18000.000000'
2025-03-30 23:35:38 (15280): Status Report: CPU Time: '60969.828125'
2025-03-31 01:15:44 (15280): Status Report: Elapsed Time: '24000.000000'
2025-03-31 01:15:44 (15280): Status Report: CPU Time: '83451.156250'
2025-03-31 02:17:21 (15280): Guest Log:  *** Job finished ***
2025-03-31 02:17:21 (15280): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:06,798 | INFO     | [payload] run_realtimelog thread has finished
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:07,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:11,061 | INFO     | [data] queue_monitor thread has finished
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:11,150 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140020830394176)>', '<ExcThread(monitor, started 140020077811456)>']
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:11,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:11,775 | INFO     | [monitor] control thread has ended
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,195 | INFO     | all workflow threads have been joined
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,195 | INFO     | end of generic workflow (traces error code: 0)
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,196 | INFO     | traces error code: 0
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,196 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,313 [wrapper] ==== pilot stdout END ====
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,324 [wrapper] ==== wrapper stdout RESUME ====
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,335 [wrapper] pilotpid: 5931
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,347 [wrapper] Pilot exit status: 0
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,444 [wrapper] pandaids: 6565315282
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,498 [wrapper] cleanup supervisor_pilot  3983 5932
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,509 [wrapper] Test setup, not cleaning
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,517 [wrapper] apfmon messages muted
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,525 [wrapper] ==== wrapper stdout END ====
2025-03-31 02:17:21 (15280): Guest Log: 2025-03-31 00:17:16,532 [wrapper] ==== wrapper stderr END ====
2025-03-31 02:17:21 (15280): Guest Log:  *** Error codes and diagnostics ***
2025-03-31 02:17:21 (15280): Guest Log:     "exeErrorCode": 0,
2025-03-31 02:17:21 (15280): Guest Log:     "exeErrorDiag": "",
2025-03-31 02:17:21 (15280): Guest Log:     "pilotErrorCode": 0,
2025-03-31 02:17:21 (15280): Guest Log:     "pilotErrorDiag": "",
2025-03-31 02:17:21 (15280): Guest Log:  *** Listing of results directory ***
2025-03-31 02:17:21 (15280): Guest Log: total 319616
2025-03-31 02:17:21 (15280): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 22 02:54 pilot3.tar.gz
2025-03-31 02:17:21 (15280): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 22 03:09 queuedata.json
2025-03-31 02:17:21 (15280): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 22 03:10 runpilot2-wrapper.sh
2025-03-31 02:17:21 (15280): Guest Log: -rwxr-xr-x. 1 atlas atlas      9234 Mar 30 16:35 init_data.xml
2025-03-31 02:17:21 (15280): Guest Log: -rwxr-xr-x. 1 atlas atlas    507277 Mar 30 16:35 input.tar.gz
2025-03-31 02:17:21 (15280): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Mar 30 16:35 start_atlas.sh
2025-03-31 02:17:21 (15280): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 30 16:35 EVNT.43634912._000763.pool.root.1 -> /data/./ATLAS.root_0
2025-03-31 02:17:21 (15280): Guest Log: -rw-r--r--. 1 atlas atlas      2620 Mar 30 16:35 pandaJob.out
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas       424 Mar 30 16:35 setup.sh.local
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas    990829 Mar 30 16:38 agis_schedconf.cvmfs.json
2025-03-31 02:17:21 (15280): Guest Log: drwx------. 4 atlas atlas      4096 Mar 30 16:38 pilot3
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas 317290450 Mar 31 00:16 HITS.43634914._018809.pool.root.1
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas        95 Mar 31 00:16 pilot_heartbeat.json
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas      1034 Mar 31 00:16 memory_monitor_summary.json
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas   1599134 Mar 31 00:16 agis_ddmendpoints.agis.ALL.json
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas    454620 Mar 31 00:16 log.43634914._018809.job.log.tgz.1
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas      7738 Mar 31 00:17 heartbeat.json
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas      4279 Mar 31 00:17 pilotlog.txt
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas   2661896 Mar 31 00:17 log.43634914._018809.job.log.1
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas       357 Mar 31 00:17 output.list
2025-03-31 02:17:21 (15280): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 31 00:17 runtime_log
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas   3133440 Mar 31 00:17 result.tar.gz
2025-03-31 02:17:21 (15280): Guest Log: -rw-r--r--. 1 atlas atlas     10946 Mar 31 00:17 runtime_log.err
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas       661 Mar 31 00:17 QpoMDmFR4F7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmVGoKDm6RrFcm.diag
2025-03-31 02:17:21 (15280): Guest Log: Looking for outputfile HITS.43634914._018809.pool.root.1
2025-03-31 02:17:21 (15280): Guest Log: HITS file was successfully produced
2025-03-31 02:17:21 (15280): Guest Log: -rw-------. 1 atlas atlas 317290450 Mar 31 00:16 /home/atlas/RunAtlas/HITS.43634914._018809.pool.root.1
2025-03-31 02:17:23 (15280): Guest Log: Successfully finished the ATLAS job!
2025-03-31 02:17:23 (15280): Guest Log: Copying the results back to the shared directory!
2025-03-31 02:17:23 (15280): Guest Log:  *** Contents of shared directory: ***
2025-03-31 02:17:23 (15280): Guest Log: total 662968
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root 357911252 Mar 30 16:35 ATLAS.root_0
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root 317290450 Mar 31 00:17 HITS.pool.root.1
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root      9234 Mar 30 16:35 init_data.xml
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root    507277 Mar 30 08:48 input.tar.gz
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root   3133440 Mar 31 00:17 result.tar.gz
2025-03-31 02:17:23 (15280): Guest Log: -rwxrwxrwx. 1 root root     17571 Mar 30 08:48 start_atlas.sh
2025-03-31 02:17:23 (15280): Guest Log:  *** Success! Shutting down the machine. ***
2025-03-31 02:17:25 (15280): VM Completion File Detected.
2025-03-31 02:17:25 (15280): Powering off VM.
2025-03-31 02:17:27 (15280): Successfully stopped VM.
2025-03-31 02:17:27 (15280): Deregistering VM. (boinc_37402f5cc00c224e, slot#3)
2025-03-31 02:17:27 (15280): Removing network bandwidth throttle group from VM.
2025-03-31 02:17:27 (15280): Removing VM from VirtualBox.
02:17:32 (15280): called boinc_finish(0)

</stderr_txt>
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