Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-30 10:44:56 (10612): Detected: vboxwrapper 26206
2025-03-30 10:44:56 (10612): Detected: BOINC client v8.0.2
2025-03-30 10:44:57 (10612): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-03-30 10:44:57 (10612): Successfully copied 'init_data.xml' to the shared directory.
2025-03-30 10:44:58 (10612): Create VM. (boinc_872d89eb282673b1, slot#2)
2025-03-30 10:44:58 (10612): Setting Memory Size for VM. (4400MB)
2025-03-30 10:44:58 (10612): Setting CPU Count for VM. (4)
2025-03-30 10:44:59 (10612): Setting Chipset Options for VM.
2025-03-30 10:44:59 (10612): Setting Graphics Controller Options for VM.
2025-03-30 10:44:59 (10612): Setting Boot Options for VM.
2025-03-30 10:44:59 (10612): Setting Network Configuration for NAT.
2025-03-30 10:45:00 (10612): Enabling VM Network Access.
2025-03-30 10:45:00 (10612): Disabling USB Support for VM.
2025-03-30 10:45:00 (10612): Disabling COM Port Support for VM.
2025-03-30 10:45:00 (10612): Disabling LPT Port Support for VM.
2025-03-30 10:45:01 (10612): Disabling Audio Support for VM.
2025-03-30 10:45:01 (10612): Disabling Clipboard Support for VM.
2025-03-30 10:45:01 (10612): Disabling Drag and Drop Support for VM.
2025-03-30 10:45:01 (10612): Adding storage controller(s) to VM.
2025-03-30 10:45:02 (10612): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-30 10:45:02 (10612): Adding VirtualBox Guest Additions to VM.
2025-03-30 10:45:02 (10612): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-30 10:45:03 (10612): forwarding host port 58198 to guest port 80
2025-03-30 10:45:03 (10612): Enabling remote desktop for VM.
2025-03-30 10:45:03 (10612): Required extension pack not installed, remote desktop not enabled.
2025-03-30 10:45:03 (10612): Enabling shared directory for VM.
2025-03-30 10:45:04 (10612): Starting VM using VBoxManage interface. (boinc_872d89eb282673b1, slot#2)
2025-03-30 10:45:08 (10612): Successfully started VM. (PID = '15972')
2025-03-30 10:45:08 (10612): Reporting VM Process ID to BOINC.
2025-03-30 10:45:08 (10612): Guest Log: BIOS: VirtualBox 6.1.34
2025-03-30 10:45:08 (10612): Guest Log: CPUID EDX: 0x178bfbff
2025-03-30 10:45:08 (10612): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-30 10:45:08 (10612): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-30 10:45:08 (10612): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-30 10:45:08 (10612): Detected: Web Application Enabled (http://localhost:58198)
2025-03-30 10:45:08 (10612): Preference change detected
2025-03-30 10:45:08 (10612): Setting CPU throttle for VM. (100%)
2025-03-30 10:45:08 (10612): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-30 10:45:10 (10612): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-30 10:45:10 (10612): Guest Log: BIOS: Booting from Hard Disk...
2025-03-30 10:45:13 (10612): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-30 10:45:13 (10612): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-30 10:45:13 (10612): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-30 10:45:20 (10612): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-30 10:45:20 (10612): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-30 10:45:26 (10612): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000270 main     Log opened 2025-03-30T10:45:24.324070000Z
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000503 main     OS Product: Linux
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000567 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000619 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000671 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000673 main     Process ID: 1302
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.000674 main     Package type: LINUX_64BITS_GENERIC
2025-03-30 10:45:26 (10612): Guest Log: 00:00:00.002217 main     5.2.32 r132073 started. Verbose level = 0
2025-03-30 10:45:26 (10612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-30 10:45:26 (10612): Guest Log: [INFO] Mounting shared directory
2025-03-30 10:45:26 (10612): Guest Log: [INFO] Checking for init_data.xml
2025-03-30 10:45:29 (10612): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-30 10:45:29 (10612): Guest Log: [INFO] Detected branch: prod
2025-03-30 10:45:29 (10612): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-30 10:45:29 (10612): Guest Log: Copying input files
2025-03-30 10:45:32 (10612): Guest Log: Copied input files into RunAtlas.
2025-03-30 10:45:32 (10612): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-30 10:45:32 (10612): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-30 10:45:32 (10612): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-30 10:45:32 (10612): Guest Log: Further information can be found at the LHC@home message board.
2025-03-30 10:45:36 (10612): Guest Log: 00:00:10.006735 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 525 106 000ns (GuestNow=1 743 324 335 804 690 000 ns GuestLast=1 743 331 524 329 796 000 ns fSetTimeLastLoop=true )
2025-03-30 10:45:42 (10612): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-30 10:45:42 (10612): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-30 10:45:42 (10612): Guest Log: 2.6.3.0 1578 0 32220 144289 4 1 3117321 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-03-30 10:45:43 (10612): Guest Log: copied the webapp to /var/www
2025-03-30 10:45:43 (10612): Guest Log: ATHENA_PROC_NUMBER=4
2025-03-30 10:45:43 (10612): Guest Log: ATHENA_CORE_NUMBER=4
2025-03-30 10:45:43 (10612): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-30 10:45:43 (10612): Guest Log:  *** Starting ATLAS job. (PandaID=6564481817 taskID=43558309) ***
2025-03-30 12:25:16 (10612): Status Report: Elapsed Time: '6000.000000'
2025-03-30 12:25:16 (10612): Status Report: CPU Time: '19783.078125'
2025-03-30 14:05:24 (10612): Status Report: Elapsed Time: '12000.000000'
2025-03-30 14:05:24 (10612): Status Report: CPU Time: '43445.875000'
2025-03-30 15:45:32 (10612): Status Report: Elapsed Time: '18000.000000'
2025-03-30 15:45:32 (10612): Status Report: CPU Time: '65016.281250'
2025-03-30 16:47:04 (10612): Guest Log:  *** Job finished ***
2025-03-30 16:47:04 (10612): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:52,278 | INFO     | [data] queue_monitor thread has finished
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:56,053 | INFO     | job.realtimelogging is not enabled
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:57,054 | INFO     | [payload] run_realtimelog thread has finished
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:57,838 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140154727737152)>', '<ExcThread(monitor, started 140154287146752)>']
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:58,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:46:58,597 | INFO     | [monitor] control thread has ended
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:02,852 | INFO     | all workflow threads have been joined
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:02,853 | INFO     | end of generic workflow (traces error code: 0)
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:02,853 | INFO     | traces error code: 0
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:02,853 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:02,996 [wrapper] ==== pilot stdout END ====
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,004 [wrapper] ==== wrapper stdout RESUME ====
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,010 [wrapper] pilotpid: 5904
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,017 [wrapper] Pilot exit status: 0
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,102 [wrapper] pandaids: 6564481817
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,161 [wrapper] cleanup supervisor_pilot 26498 5905
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,168 [wrapper] Test setup, not cleaning
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,175 [wrapper] apfmon messages muted
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,188 [wrapper] ==== wrapper stdout END ====
2025-03-30 16:47:04 (10612): Guest Log: 2025-03-30 14:47:03,196 [wrapper] ==== wrapper stderr END ====
2025-03-30 16:47:04 (10612): Guest Log:  *** Error codes and diagnostics ***
2025-03-30 16:47:04 (10612): Guest Log:     "exeErrorCode": 0,
2025-03-30 16:47:04 (10612): Guest Log:     "exeErrorDiag": "",
2025-03-30 16:47:04 (10612): Guest Log:     "pilotErrorCode": 0,
2025-03-30 16:47:04 (10612): Guest Log:     "pilotErrorDiag": "",
2025-03-30 16:47:04 (10612): Guest Log:  *** Listing of results directory ***
2025-03-30 16:47:04 (10612): Guest Log: total 183208
2025-03-30 16:47:04 (10612): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 21 08:20 pilot3.tar.gz
2025-03-30 16:47:04 (10612): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 21 08:23 queuedata.json
2025-03-30 16:47:04 (10612): Guest Log: -rwx------. 1 atlas atlas     37212 Mar 21 08:27 runpilot2-wrapper.sh
2025-03-30 16:47:04 (10612): Guest Log: -rwxr-xr-x. 1 atlas atlas      9234 Mar 30 08:45 init_data.xml
2025-03-30 16:47:04 (10612): Guest Log: -rwxr-xr-x. 1 atlas atlas    507265 Mar 30 08:45 input.tar.gz
2025-03-30 16:47:04 (10612): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Mar 30 08:45 start_atlas.sh
2025-03-30 16:47:04 (10612): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 30 08:45 EVNT.43558307._000021.pool.root.1 -> /data/./ATLAS.root_0
2025-03-30 16:47:04 (10612): Guest Log: -rw-r--r--. 1 atlas atlas      2599 Mar 30 08:45 pandaJob.out
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas       424 Mar 30 08:45 setup.sh.local
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas    994676 Mar 30 08:46 agis_schedconf.cvmfs.json
2025-03-30 16:47:04 (10612): Guest Log: drwx------. 4 atlas atlas      4096 Mar 30 08:47 pilot3
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas 179098531 Mar 30 14:45 HITS.43558309._000511.pool.root.1
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas      1032 Mar 30 14:46 memory_monitor_summary.json
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas   1599134 Mar 30 14:46 agis_ddmendpoints.agis.ALL.json
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas    390599 Mar 30 14:46 log.43558309._000511.job.log.tgz.1
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas        95 Mar 30 14:46 pilot_heartbeat.json
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas      7718 Mar 30 14:46 heartbeat.json
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas      4351 Mar 30 14:47 pilotlog.txt
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas   1975521 Mar 30 14:47 log.43558309._000511.job.log.1
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas       357 Mar 30 14:47 output.list
2025-03-30 16:47:04 (10612): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 30 14:47 runtime_log
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas   2385920 Mar 30 14:47 result.tar.gz
2025-03-30 16:47:04 (10612): Guest Log: -rw-r--r--. 1 atlas atlas     10946 Mar 30 14:47 runtime_log.err
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas       660 Mar 30 14:47 AQfKDmptmF7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm8n7KDm49DWQo.diag
2025-03-30 16:47:04 (10612): Guest Log: Looking for outputfile HITS.43558309._000511.pool.root.1
2025-03-30 16:47:04 (10612): Guest Log: HITS file was successfully produced
2025-03-30 16:47:04 (10612): Guest Log: -rw-------. 1 atlas atlas 179098531 Mar 30 14:45 /home/atlas/RunAtlas/HITS.43558309._000511.pool.root.1
2025-03-30 16:47:05 (10612): Guest Log: Successfully finished the ATLAS job!
2025-03-30 16:47:05 (10612): Guest Log: Copying the results back to the shared directory!
2025-03-30 16:47:05 (10612): Guest Log:  *** Contents of shared directory: ***
2025-03-30 16:47:05 (10612): Guest Log: total 421684
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root 249773593 Mar 30 08:44 ATLAS.root_0
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root 179098531 Mar 30 14:47 HITS.pool.root.1
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root      9234 Mar 30 08:44 init_data.xml
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root    507265 Mar 30 08:44 input.tar.gz
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root   2385920 Mar 30 14:47 result.tar.gz
2025-03-30 16:47:05 (10612): Guest Log: -rwxrwxrwx. 1 root root     17571 Mar 30 08:44 start_atlas.sh
2025-03-30 16:47:05 (10612): Guest Log:  *** Success! Shutting down the machine. ***
2025-03-30 16:47:06 (10612): VM Completion File Detected.
2025-03-30 16:47:06 (10612): Powering off VM.
2025-03-30 16:47:07 (10612): Successfully stopped VM.
2025-03-30 16:47:07 (10612): Deregistering VM. (boinc_872d89eb282673b1, slot#2)
2025-03-30 16:47:07 (10612): Removing network bandwidth throttle group from VM.
2025-03-30 16:47:07 (10612): Removing VM from VirtualBox.
16:47:12 (10612): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN