Stderr output

<core_client_version>7.24.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-24 02:03:00 (83880): Detected: vboxwrapper 26206
2025-03-24 02:03:00 (83880): Detected: BOINC client v7.24.4
2025-03-24 02:03:01 (83880): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-03-24 02:03:01 (83880): Detected: Sandbox Configuration Enabled
2025-03-24 02:03:01 (83880): Successfully copied 'init_data.xml' to the shared directory.
2025-03-24 02:03:01 (83880): Create VM. (boinc_66ff4c56c817cacc, slot#8)
2025-03-24 02:03:01 (83880): Setting Memory Size for VM. (4200MB)
2025-03-24 02:03:01 (83880): Setting CPU Count for VM. (2)
2025-03-24 02:03:01 (83880): Setting Chipset Options for VM.
2025-03-24 02:03:01 (83880): Setting Graphics Controller Options for VM.
2025-03-24 02:03:01 (83880): Setting Boot Options for VM.
2025-03-24 02:03:01 (83880): Setting Network Configuration for NAT.
2025-03-24 02:03:01 (83880): Enabling VM Network Access.
2025-03-24 02:03:01 (83880): Disabling USB Support for VM.
2025-03-24 02:03:01 (83880): Disabling COM Port Support for VM.
2025-03-24 02:03:01 (83880): Disabling Audio Support for VM.
2025-03-24 02:03:01 (83880): Disabling Clipboard Support for VM.
2025-03-24 02:03:01 (83880): Disabling Drag and Drop Support for VM.
2025-03-24 02:03:01 (83880): Adding storage controller(s) to VM.
2025-03-24 02:03:01 (83880): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-24 02:03:03 (83880): Adding VirtualBox Guest Additions to VM.
2025-03-24 02:03:03 (83880): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-24 02:03:03 (83880): forwarding host port 59909 to guest port 80
2025-03-24 02:03:03 (83880): Enabling remote desktop for VM.
2025-03-24 02:03:03 (83880): Required extension pack not installed, remote desktop not enabled.
2025-03-24 02:03:03 (83880): Enabling shared directory for VM.
2025-03-24 02:03:03 (83880): Starting VM using VBoxManage interface. (boinc_66ff4c56c817cacc, slot#8)
2025-03-24 02:03:07 (83880): Successfully started VM. (PID = '83951')
2025-03-24 02:03:07 (83880): Reporting VM Process ID to BOINC.
2025-03-24 02:03:07 (83880): Guest Log: BIOS: VirtualBox 7.1.6
2025-03-24 02:03:07 (83880): Guest Log: CPUID EDX: 0x178bfbff
2025-03-24 02:03:07 (83880): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-24 02:03:07 (83880): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-24 02:03:07 (83880): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-24 02:03:07 (83880): Detected: Web Application Enabled (http://localhost:59909)
2025-03-24 02:03:07 (83880): Preference change detected
2025-03-24 02:03:07 (83880): Setting CPU throttle for VM. (100%)
2025-03-24 02:03:07 (83880): Setting network throttle for VM. (200KB)
2025-03-24 02:03:07 (83880): Setting checkpoint interval to 3600 seconds. (Higher value of (Preference: 3600 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-24 02:03:09 (83880): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-24 02:03:09 (83880): Guest Log: BIOS: Booting from Hard Disk...
2025-03-24 02:03:13 (83880): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-24 02:03:13 (83880): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-24 02:03:13 (83880): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-24 02:03:19 (83880): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-24 02:03:19 (83880): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-24 02:03:29 (83880): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000191 main     Log opened 2025-03-24T02:03:27.448465000Z
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000333 main     OS Product: Linux
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000393 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000446 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000500 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000502 main     Process ID: 1270
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.000503 main     Package type: LINUX_64BITS_GENERIC
2025-03-24 02:03:29 (83880): Guest Log: 00:00:00.003270 main     5.2.32 r132073 started. Verbose level = 0
2025-03-24 02:03:29 (83880): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-24 02:03:29 (83880): Guest Log: [INFO] Mounting shared directory
2025-03-24 02:03:29 (83880): Guest Log: [INFO] Checking for init_data.xml
2025-03-24 02:03:39 (83880): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-24 02:03:39 (83880): Guest Log: [INFO] Detected branch: prod
2025-03-24 02:03:40 (83880): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-24 02:03:40 (83880): Guest Log: Copying input files
2025-03-24 02:03:45 (83880): Guest Log: Copied input files into RunAtlas.
2025-03-24 02:03:45 (83880): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-24 02:03:45 (83880): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-24 02:03:45 (83880): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-24 02:03:45 (83880): Guest Log: Further information can be found at the LHC@home message board.
2025-03-24 02:03:54 (83880): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-24 02:03:55 (83880): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-24 02:03:55 (83880): Guest Log: 2.6.3.0 1547 0 30144 144048 4 1 3117320 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-03-24 02:03:56 (83880): Guest Log: copied the webapp to /var/www
2025-03-24 02:03:56 (83880): Guest Log: ATHENA_PROC_NUMBER=2
2025-03-24 02:03:56 (83880): Guest Log: ATHENA_CORE_NUMBER=2
2025-03-24 02:03:56 (83880): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-24 02:03:56 (83880): Guest Log:  *** Starting ATLAS job. (PandaID=6565315362 taskID=43634914) ***
2025-03-24 03:42:32 (83880): Status Report: Elapsed Time: '6000.000000'
2025-03-24 03:42:32 (83880): Status Report: CPU Time: '9783.270000'
2025-03-24 05:21:50 (83880): Status Report: Elapsed Time: '12000.000000'
2025-03-24 05:21:50 (83880): Status Report: CPU Time: '21625.310000'
2025-03-24 07:01:08 (83880): Status Report: Elapsed Time: '18000.000000'
2025-03-24 07:01:08 (83880): Status Report: CPU Time: '33469.120000'
2025-03-24 08:40:26 (83880): Status Report: Elapsed Time: '24000.000000'
2025-03-24 08:40:26 (83880): Status Report: CPU Time: '45321.710000'
2025-03-24 09:02:32 (83880): Preference change detected
2025-03-24 09:02:32 (83880): Setting CPU throttle for VM. (100%)
2025-03-24 09:02:32 (83880): Setting network throttle for VM. (200KB)
2025-03-24 09:02:32 (83880): Setting checkpoint interval to 3600 seconds. (Higher value of (Preference: 3600 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-24 09:02:41 (83880): Preference change detected
2025-03-24 09:02:41 (83880): Setting CPU throttle for VM. (100%)
2025-03-24 09:02:41 (83880): Setting network throttle for VM. (200KB)
2025-03-24 09:02:41 (83880): Setting checkpoint interval to 3600 seconds. (Higher value of (Preference: 3600 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-24 10:19:43 (83880): Status Report: Elapsed Time: '30000.000000'
2025-03-24 10:19:43 (83880): Status Report: CPU Time: '57099.690000'
2025-03-24 11:59:01 (83880): Status Report: Elapsed Time: '36000.000000'
2025-03-24 11:59:01 (83880): Status Report: CPU Time: '68944.420000'
2025-03-24 13:00:54 (83880): Guest Log:  *** Job finished ***
2025-03-24 13:00:54 (83880): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:50,735 | INFO     | [payload] failed_post thread has finished
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:51,430 | INFO     | [data] copytool_out thread has finished
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:52,148 | INFO     | [data] queue_monitor thread has finished
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:53,462 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140045186496320)>', '<ExcThread(monitor, started 140044740302592)>']
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:53,971 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:53,972 | INFO     | [monitor] control thread has ended
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,468 | INFO     | all workflow threads have been joined
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,468 | INFO     | end of generic workflow (traces error code: 0)
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,468 | INFO     | traces error code: 0
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,589 [wrapper] ==== pilot stdout END ====
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,598 [wrapper] ==== wrapper stdout RESUME ====
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,606 [wrapper] pilotpid: 5897
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:58,614 [wrapper] Pilot exit status: 0
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,714 [wrapper] pandaids: 6565315362
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,775 [wrapper] cleanup supervisor_pilot 24077 5898
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,786 [wrapper] Test setup, not cleaning
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,795 [wrapper] apfmon messages muted
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,803 [wrapper] ==== wrapper stdout END ====
2025-03-24 13:00:54 (83880): Guest Log: 2025-03-24 13:00:59,811 [wrapper] ==== wrapper stderr END ====
2025-03-24 13:00:54 (83880): Guest Log:  *** Error codes and diagnostics ***
2025-03-24 13:00:54 (83880): Guest Log:     "exeErrorCode": 0,
2025-03-24 13:00:54 (83880): Guest Log:     "exeErrorDiag": "",
2025-03-24 13:00:54 (83880): Guest Log:     "pilotErrorCode": 0,
2025-03-24 13:00:54 (83880): Guest Log:     "pilotErrorDiag": "",
2025-03-24 13:00:54 (83880): Guest Log:  *** Listing of results directory ***
2025-03-24 13:00:54 (83880): Guest Log: total 331580
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 22 02:54 pilot3.tar.gz
2025-03-24 13:00:54 (83880): Guest Log: -rwx------. 1 atlas atlas     37140 Mar 22 03:25 runpilot2-wrapper.sh
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Mar 22 03:25 queuedata.json
2025-03-24 13:00:54 (83880): Guest Log: -rw-r-----. 1 atlas atlas     17571 Mar 24 02:03 start_atlas.sh
2025-03-24 13:00:54 (83880): Guest Log: -rw-r-----. 1 atlas atlas    507266 Mar 24 02:03 input.tar.gz
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas      8670 Mar 24 02:03 init_data.xml
2025-03-24 13:00:54 (83880): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 24 02:03 EVNT.43634912._000766.pool.root.1 -> /data/./ATLAS.root_0
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas      2620 Mar 24 02:03 pandaJob.out
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas       424 Mar 24 02:04 setup.sh.local
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas    993075 Mar 24 02:07 agis_schedconf.cvmfs.json
2025-03-24 13:00:54 (83880): Guest Log: drwx------. 4 atlas atlas      4096 Mar 24 02:07 pilot3
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas 326470309 Mar 24 12:59 HITS.43634914._018889.pool.root.1
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas        96 Mar 24 12:59 pilot_heartbeat.json
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas      1030 Mar 24 13:00 memory_monitor_summary.json
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas   1598879 Mar 24 13:00 agis_ddmendpoints.agis.ALL.json
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas    550614 Mar 24 13:00 log.43634914._018889.job.log.tgz.1
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas      7692 Mar 24 13:00 heartbeat.json
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas      4465 Mar 24 13:00 pilotlog.txt
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas   4095048 Mar 24 13:00 log.43634914._018889.job.log.1
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas       357 Mar 24 13:00 output.list
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 24 13:00 runtime_log
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas   4669440 Mar 24 13:00 result.tar.gz
2025-03-24 13:00:54 (83880): Guest Log: -rw-r--r--. 1 atlas atlas     10963 Mar 24 13:00 runtime_log.err
2025-03-24 13:00:54 (83880): Guest Log: -rw-------. 1 atlas atlas       670 Mar 24 13:00 IZ7MDmNf4F7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmbr8KDmcOpUPo.diag
2025-03-24 13:00:55 (83880): Guest Log: Looking for outputfile HITS.43634914._018889.pool.root.1
2025-03-24 13:00:55 (83880): Guest Log: HITS file was successfully produced
2025-03-24 13:00:55 (83880): Guest Log: -rw-------. 1 atlas atlas 326470309 Mar 24 12:59 /home/atlas/RunAtlas/HITS.43634914._018889.pool.root.1
2025-03-24 13:00:55 (83880): Guest Log: Successfully finished the ATLAS job!
2025-03-24 13:00:55 (83880): Guest Log: Copying the results back to the shared directory!
2025-03-24 13:00:55 (83880): Guest Log:  *** Contents of shared directory: ***
2025-03-24 13:00:55 (83880): Guest Log: total 372784
2025-03-24 13:00:55 (83880): Guest Log: -rw-rw----. 1 root root 360825351 Mar 24 02:03 ATLAS.root_0
2025-03-24 13:00:55 (83880): Guest Log: -rw-rw-r--. 1 root root      8670 Mar 24 02:03 init_data.xml
2025-03-24 13:00:55 (83880): Guest Log: -rw-rw----. 1 root root    507266 Mar 24 02:03 input.tar.gz
2025-03-24 13:00:55 (83880): Guest Log: -rw-r--r--. 1 root root   4669440 Mar 24 13:00 result.tar.gz
2025-03-24 13:00:55 (83880): Guest Log: -rw-rw----. 1 root root     17571 Mar 24 02:03 start_atlas.sh
2025-03-24 13:00:55 (83880): Guest Log:  *** Success! Shutting down the machine. ***
2025-03-24 13:00:55 (83880): VM Completion File Detected.
2025-03-24 13:00:55 (83880): Powering off VM.
2025-03-24 13:00:55 (83880): Successfully stopped VM.
2025-03-24 13:00:55 (83880): Deregistering VM. (boinc_66ff4c56c817cacc, slot#8)
2025-03-24 13:00:55 (83880): Removing network bandwidth throttle group from VM.
2025-03-24 13:00:56 (83880): Removing VM from VirtualBox.
13:01:01 (83880): called boinc_finish(0)

</stderr_txt>
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