Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-22 11:27:51 (739793): Detected: vboxwrapper 26206
2025-03-22 11:27:51 (739793): Detected: BOINC client v8.0.4
2025-03-22 11:27:52 (739793): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-03-22 11:27:52 (739793): Successfully copied 'init_data.xml' to the shared directory.
2025-03-22 11:27:52 (739793): Create VM. (boinc_2c11d5ddc5175048, slot#1)
2025-03-22 11:27:52 (739793): Setting Memory Size for VM. (4300MB)
2025-03-22 11:27:52 (739793): Setting CPU Count for VM. (3)
2025-03-22 11:27:52 (739793): Setting Chipset Options for VM.
2025-03-22 11:27:52 (739793): Setting Graphics Controller Options for VM.
2025-03-22 11:27:52 (739793): Setting Boot Options for VM.
2025-03-22 11:27:52 (739793): Setting Network Configuration for NAT.
2025-03-22 11:27:53 (739793): Enabling VM Network Access.
2025-03-22 11:27:53 (739793): Disabling USB Support for VM.
2025-03-22 11:27:53 (739793): Disabling COM Port Support for VM.
2025-03-22 11:27:53 (739793): Disabling LPT Port Support for VM.
2025-03-22 11:27:53 (739793): Disabling Audio Support for VM.
2025-03-22 11:27:53 (739793): Disabling Clipboard Support for VM.
2025-03-22 11:27:53 (739793): Disabling Drag and Drop Support for VM.
2025-03-22 11:27:53 (739793): Adding storage controller(s) to VM.
2025-03-22 11:27:53 (739793): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-22 11:27:55 (739793): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-22 11:27:55 (739793): forwarding host port 36979 to guest port 80
2025-03-22 11:27:55 (739793): Enabling remote desktop for VM.
2025-03-22 11:27:55 (739793): Required extension pack not installed, remote desktop not enabled.
2025-03-22 11:27:55 (739793): Enabling shared directory for VM.
2025-03-22 11:27:56 (739793): Starting VM using VBoxManage interface. (boinc_2c11d5ddc5175048, slot#1)
2025-03-22 11:27:57 (739793): Successfully started VM. (PID = '740274')
2025-03-22 11:27:57 (739793): Reporting VM Process ID to BOINC.
2025-03-22 11:27:57 (739793): Guest Log: BIOS: VirtualBox 7.0.20
2025-03-22 11:27:57 (739793): Guest Log: CPUID EDX: 0x178bfbff
2025-03-22 11:27:57 (739793): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-22 11:27:57 (739793): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-22 11:27:57 (739793): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-22 11:27:57 (739793): Detected: Web Application Enabled (http://localhost:36979)
2025-03-22 11:27:57 (739793): Preference change detected
2025-03-22 11:27:57 (739793): Setting CPU throttle for VM. (50%)
2025-03-22 11:27:57 (739793): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-22 11:27:59 (739793): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-22 11:27:59 (739793): Guest Log: BIOS: Booting from Hard Disk...
2025-03-22 11:28:03 (739793): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-22 11:28:03 (739793): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-22 11:28:03 (739793): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-22 11:28:14 (739793): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-22 11:28:14 (739793): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-22 11:28:34 (739793): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000292 main     Log opened 2025-03-22T02:28:33.277576000Z
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000476 main     OS Product: Linux
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000531 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000576 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000620 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000622 main     Process ID: 1275
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.000623 main     Package type: LINUX_64BITS_GENERIC
2025-03-22 11:28:34 (739793): Guest Log: 00:00:00.004605 main     5.2.32 r132073 started. Verbose level = 0
2025-03-22 11:28:35 (739793): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-22 11:28:35 (739793): Guest Log: [INFO] Mounting shared directory
2025-03-22 11:28:35 (739793): Guest Log: [INFO] Checking for init_data.xml
2025-03-22 11:28:42 (739793): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-22 11:28:42 (739793): Guest Log: [INFO] Detected branch: prod
2025-03-22 11:28:43 (739793): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-22 11:28:43 (739793): Guest Log: Copying input files
2025-03-22 11:28:47 (739793): Guest Log: Copied input files into RunAtlas.
2025-03-22 11:28:47 (739793): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-22 11:28:47 (739793): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-22 11:28:47 (739793): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-22 11:28:47 (739793): Guest Log: Further information can be found at the LHC@home message board.
2025-03-22 11:29:02 (739793): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-22 11:29:03 (739793): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-22 11:29:03 (739793): Guest Log: 2.6.3.0 1551 0 32208 143978 4 1 3117320 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-03-22 11:29:06 (739793): Guest Log: copied the webapp to /var/www
2025-03-22 11:29:06 (739793): Guest Log: ATHENA_PROC_NUMBER=3
2025-03-22 11:29:06 (739793): Guest Log: ATHENA_CORE_NUMBER=3
2025-03-22 11:29:06 (739793): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-22 11:29:06 (739793): Guest Log:  *** Starting ATLAS job. (PandaID=6564482018 taskID=43558309) ***
2025-03-22 11:30:05 (739793): VM state change detected. (old = 'running', new = 'paused')
2025-03-22 11:30:24 (739793): VM state change detected. (old = 'paused', new = 'running')
2025-03-22 11:38:42 (739793): Guest Log:  *** Job finished ***
2025-03-22 11:38:42 (739793): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:09,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:10,729 | INFO     | [job] queue monitor thread has finished
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:12,230 | INFO     | [data] queue_monitor thread has finished
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:14,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661813241664)>', '<ExcThread(monitor, started 139660776953600)>']
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:14,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:14,928 | INFO     | [monitor] control thread has ended
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,076 | INFO     | all workflow threads have been joined
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,076 | INFO     | end of generic workflow (traces error code: 0)
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,077 | INFO     | traces error code: 0
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,078 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,226 [wrapper] ==== pilot stdout END ====
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,242 [wrapper] ==== wrapper stdout RESUME ====
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,258 [wrapper] pilotpid: 5879
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,297 [wrapper] Pilot exit status: 0
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,388 [wrapper] pandaids: 6564482018
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,524 [wrapper] cleanup supervisor_pilot  5885 5880
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,550 [wrapper] Test setup, not cleaning
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,573 [wrapper] apfmon messages muted
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,597 [wrapper] ==== wrapper stdout END ====
2025-03-22 11:38:42 (739793): Guest Log: 2025-03-22 02:38:19,634 [wrapper] ==== wrapper stderr END ====
2025-03-22 11:38:42 (739793): Guest Log:  *** Error codes and diagnostics ***
2025-03-22 11:38:42 (739793): Guest Log:     "exeErrorCode": 65,
2025-03-22 11:38:42 (739793): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-03-22 11:38:42 (739793): Guest Log:     "pilotErrorCode": 1305,
2025-03-22 11:38:42 (739793): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-03-22 11:38:42 (739793): Guest Log:  *** Listing of results directory ***
2025-03-22 11:38:42 (739793): Guest Log: total 3904
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas  494584 Mar 21 09:02 pilot3.tar.gz
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Mar 21 09:06 queuedata.json
2025-03-22 11:38:42 (739793): Guest Log: -rwx------. 1 atlas atlas   37212 Mar 21 09:07 runpilot2-wrapper.sh
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas   17571 Mar 22 02:28 start_atlas.sh
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas    6419 Mar 22 02:28 init_data.xml
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas  507263 Mar 22 02:28 input.tar.gz
2025-03-22 11:38:42 (739793): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 22 02:28 EVNT.43558307._000029.pool.root.1 -> /data/./ATLAS.root_0
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas    2599 Mar 22 02:29 pandaJob.out
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas     424 Mar 22 02:29 setup.sh.local
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas  993071 Mar 22 02:30 agis_schedconf.cvmfs.json
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas 1598879 Mar 22 02:30 agis_ddmendpoints.agis.ALL.json
2025-03-22 11:38:42 (739793): Guest Log: drwx------. 4 atlas atlas    4096 Mar 22 02:30 pilot3
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas    1008 Mar 22 02:35 memory_monitor_summary.json
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas   21882 Mar 22 02:35 log.43558309._000712.job.log.tgz.1
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas      95 Mar 22 02:37 pilot_heartbeat.json
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas    8393 Mar 22 02:38 heartbeat.json
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas    4402 Mar 22 02:38 pilotlog.txt
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas   91126 Mar 22 02:38 log.43558309._000712.job.log.1
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas     188 Mar 22 02:38 output.list
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 22 02:38 runtime_log
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas  133120 Mar 22 02:38 result.tar.gz
2025-03-22 11:38:42 (739793): Guest Log: -rw-r--r--. 1 atlas atlas   10789 Mar 22 02:38 runtime_log.err
2025-03-22 11:38:42 (739793): Guest Log: -rw-------. 1 atlas atlas     643 Mar 22 02:38 PrZLDm1WnF7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmhq7KDmf2PBIn.diag
2025-03-22 11:38:42 (739793): Guest Log: Looking for outputfile HITS.43558309._000712.pool.root.1
2025-03-22 11:38:42 (739793): Guest Log: No HITS file was produced
2025-03-22 11:38:42 (739793): Guest Log: Successfully finished the ATLAS job!
2025-03-22 11:38:42 (739793): Guest Log: Copying the results back to the shared directory!
2025-03-22 11:38:43 (739793): Guest Log:  *** Contents of shared directory: ***
2025-03-22 11:38:43 (739793): Guest Log: total 217536
2025-03-22 11:38:43 (739793): Guest Log: -rw-r--r--. 1 root root 222078947 Mar 22 02:27 ATLAS.root_0
2025-03-22 11:38:43 (739793): Guest Log: -rw-r--r--. 1 root root      6419 Mar 22 02:27 init_data.xml
2025-03-22 11:38:43 (739793): Guest Log: -rw-r--r--. 1 root root    507263 Mar 22 02:27 input.tar.gz
2025-03-22 11:38:43 (739793): Guest Log: -rw-r--r--. 1 root root    133120 Mar 22  2025 result.tar.gz
2025-03-22 11:38:43 (739793): Guest Log: -rw-r--r--. 1 root root     17571 Mar 22 02:27 start_atlas.sh
2025-03-22 11:38:43 (739793): Guest Log:  *** Success! Shutting down the machine. ***
2025-03-22 11:38:43 (739793): VM Completion File Detected.
2025-03-22 11:38:43 (739793): Powering off VM.
2025-03-22 11:38:44 (739793): Successfully stopped VM.
2025-03-22 11:38:44 (739793): Deregistering VM. (boinc_2c11d5ddc5175048, slot#1)
2025-03-22 11:38:44 (739793): Removing network bandwidth throttle group from VM.
2025-03-22 11:38:44 (739793): Removing VM from VirtualBox.
11:38:49 (739793): called boinc_finish(0)

</stderr_txt>
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