Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-03-13 06:44:36 (3828): Detected: vboxwrapper 26206
2025-03-13 06:44:36 (3828): Detected: BOINC client v8.0.2
2025-03-13 06:44:37 (3828): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-03-13 06:44:37 (3828): Successfully copied 'init_data.xml' to the shared directory.
2025-03-13 06:44:37 (3828): Create VM. (boinc_df5905b4799e26f1, slot#3)
2025-03-13 06:44:38 (3828): Setting Memory Size for VM. (4300MB)
2025-03-13 06:44:39 (3828): Setting CPU Count for VM. (3)
2025-03-13 06:44:39 (3828): Setting Chipset Options for VM.
2025-03-13 06:44:40 (3828): Setting Graphics Controller Options for VM.
2025-03-13 06:44:40 (3828): Setting Boot Options for VM.
2025-03-13 06:44:40 (3828): Setting Network Configuration for NAT.
2025-03-13 06:44:40 (3828): Enabling VM Network Access.
2025-03-13 06:44:41 (3828): Disabling USB Support for VM.
2025-03-13 06:44:41 (3828): Disabling COM Port Support for VM.
2025-03-13 06:44:41 (3828): Disabling LPT Port Support for VM.
2025-03-13 06:44:41 (3828): Disabling Audio Support for VM.
2025-03-13 06:44:42 (3828): Disabling Clipboard Support for VM.
2025-03-13 06:44:42 (3828): Disabling Drag and Drop Support for VM.
2025-03-13 06:44:42 (3828): Adding storage controller(s) to VM.
2025-03-13 06:44:43 (3828): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-03-13 06:44:46 (3828): Adding VirtualBox Guest Additions to VM.
2025-03-13 06:44:46 (3828): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-03-13 06:44:46 (3828): forwarding host port 63035 to guest port 80
2025-03-13 06:44:46 (3828): Enabling remote desktop for VM.
2025-03-13 06:44:47 (3828): Required extension pack not installed, remote desktop not enabled.
2025-03-13 06:44:47 (3828): Enabling shared directory for VM.
2025-03-13 06:44:47 (3828): Starting VM using VBoxManage interface. (boinc_df5905b4799e26f1, slot#3)
2025-03-13 06:44:55 (3828): Successfully started VM. (PID = '3784')
2025-03-13 06:44:55 (3828): Reporting VM Process ID to BOINC.
2025-03-13 06:44:55 (3828): Guest Log: BIOS: VirtualBox 7.0.6
2025-03-13 06:44:55 (3828): Guest Log: CPUID EDX: 0x178bfbff
2025-03-13 06:44:55 (3828): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-03-13 06:44:55 (3828): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-03-13 06:44:55 (3828): VM state change detected. (old = 'poweredoff', new = 'running')
2025-03-13 06:44:55 (3828): Detected: Web Application Enabled (http://localhost:63035)
2025-03-13 06:44:55 (3828): Preference change detected
2025-03-13 06:44:55 (3828): Setting CPU throttle for VM. (90%)
2025-03-13 06:44:55 (3828): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-03-13 06:44:57 (3828): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-03-13 06:44:57 (3828): Guest Log: BIOS: Booting from Hard Disk...
2025-03-13 06:45:00 (3828): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-03-13 06:45:00 (3828): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-03-13 06:45:00 (3828): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-03-13 06:45:05 (3828): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-03-13 06:45:05 (3828): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-03-13 06:45:13 (3828): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000166 main     Log opened 2025-03-13T06:45:11.645408000Z
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000322 main     OS Product: Linux
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000374 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000415 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000455 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000456 main     Process ID: 1280
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.000457 main     Package type: LINUX_64BITS_GENERIC
2025-03-13 06:45:13 (3828): Guest Log: 00:00:00.002488 main     5.2.32 r132073 started. Verbose level = 0
2025-03-13 06:45:13 (3828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-03-13 06:45:13 (3828): Guest Log: [INFO] Mounting shared directory
2025-03-13 06:45:13 (3828): Guest Log: [INFO] Checking for init_data.xml
2025-03-13 06:45:19 (3828): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-03-13 06:45:19 (3828): Guest Log: [INFO] Detected branch: prod
2025-03-13 06:45:19 (3828): Guest Log: This is the prod version of the ATLAS job wrapper
2025-03-13 06:45:19 (3828): Guest Log: Copying input files
2025-03-13 06:45:22 (3828): Guest Log: Copied input files into RunAtlas.
2025-03-13 06:45:22 (3828): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-03-13 06:45:22 (3828): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-03-13 06:45:22 (3828): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-03-13 06:45:22 (3828): Guest Log: Further information can be found at the LHC@home message board.
2025-03-13 06:45:23 (3828): Guest Log: 00:00:10.005642 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 087 312 000ns (GuestNow=1 741 862 722 737 580 000 ns GuestLast=1 741 848 311 650 268 000 ns fSetTimeLastLoop=true )
2025-03-13 06:45:37 (3828): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-03-13 06:45:37 (3828): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-03-13 06:45:37 (3828): Guest Log: 2.6.3.0 1560 0 30016 143634 3 1 3117319 4096000 0 65024 0 0 n/a 1 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-03-13 06:45:38 (3828): Guest Log: copied the webapp to /var/www
2025-03-13 06:45:38 (3828): Guest Log: ATHENA_PROC_NUMBER=3
2025-03-13 06:45:38 (3828): Guest Log: ATHENA_CORE_NUMBER=3
2025-03-13 06:45:38 (3828): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-03-13 06:45:38 (3828): Guest Log:  *** Starting ATLAS job. (PandaID=6555311174 taskID=43625193) ***
2025-03-13 08:25:03 (3828): Status Report: Elapsed Time: '6000.000000'
2025-03-13 08:25:03 (3828): Status Report: CPU Time: '12514.812500'
2025-03-13 10:05:09 (3828): Status Report: Elapsed Time: '12000.000000'
2025-03-13 10:05:09 (3828): Status Report: CPU Time: '28726.812500'
2025-03-13 11:45:20 (3828): Status Report: Elapsed Time: '18000.000000'
2025-03-13 11:45:20 (3828): Status Report: CPU Time: '44946.921875'
2025-03-13 13:25:26 (3828): Status Report: Elapsed Time: '24000.000000'
2025-03-13 13:25:26 (3828): Status Report: CPU Time: '61161.828125'
2025-03-13 13:40:22 (3828): Guest Log:  *** Job finished ***
2025-03-13 13:40:22 (3828): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:11,268 | INFO     | [payload] run_realtimelog thread has finished
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:12,080 | INFO     | [data] copytool_out thread has finished
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:13,269 | INFO     | [data] queue_monitor thread has finished
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:13,836 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140510087239488)>', '<ExcThread(monitor, started 140509494363904)>']
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:14,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:14,042 | INFO     | [monitor] control thread has ended
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,841 | INFO     | all workflow threads have been joined
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,842 | INFO     | end of generic workflow (traces error code: 0)
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,842 | INFO     | traces error code: 0
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,955 [wrapper] ==== pilot stdout END ====
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,961 [wrapper] ==== wrapper stdout RESUME ====
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,968 [wrapper] pilotpid: 5877
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:18,973 [wrapper] Pilot exit status: 0
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,493 [wrapper] pandaids: 6555311174
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,534 [wrapper] cleanup supervisor_pilot  1721 5878
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,544 [wrapper] Test setup, not cleaning
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,558 [wrapper] apfmon messages muted
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,564 [wrapper] ==== wrapper stdout END ====
2025-03-13 13:40:22 (3828): Guest Log: 2025-03-13 17:40:20,570 [wrapper] ==== wrapper stderr END ====
2025-03-13 13:40:22 (3828): Guest Log:  *** Error codes and diagnostics ***
2025-03-13 13:40:22 (3828): Guest Log:     "exeErrorCode": 0,
2025-03-13 13:40:22 (3828): Guest Log:     "exeErrorDiag": "",
2025-03-13 13:40:22 (3828): Guest Log:     "pilotErrorCode": 0,
2025-03-13 13:40:22 (3828): Guest Log:     "pilotErrorDiag": "",
2025-03-13 13:40:22 (3828): Guest Log:  *** Listing of results directory ***
2025-03-13 13:40:22 (3828): Guest Log: total 165576
2025-03-13 13:40:22 (3828): Guest Log: -rw-r--r--. 1 atlas atlas    494584 Mar 13 10:37 pilot3.tar.gz
2025-03-13 13:40:22 (3828): Guest Log: -rwx------. 1 atlas atlas     35865 Mar 13 10:38 runpilot2-wrapper.sh
2025-03-13 13:40:22 (3828): Guest Log: -rw-r--r--. 1 atlas atlas      5119 Mar 13 10:38 queuedata.json
2025-03-13 13:40:22 (3828): Guest Log: -rwxr-xr-x. 1 atlas atlas      8748 Mar 13 10:45 init_data.xml
2025-03-13 13:40:22 (3828): Guest Log: -rwxr-xr-x. 1 atlas atlas    507033 Mar 13 10:45 input.tar.gz
2025-03-13 13:40:22 (3828): Guest Log: -rwxr-xr-x. 1 atlas atlas     17571 Mar 13 10:45 start_atlas.sh
2025-03-13 13:40:22 (3828): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 13 10:45 EVNT.43625189._000058.pool.root.1 -> /data/./ATLAS.root_0
2025-03-13 13:40:22 (3828): Guest Log: -rw-r--r--. 1 atlas atlas      2507 Mar 13 10:45 pandaJob.out
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas       424 Mar 13 10:45 setup.sh.local
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas    996980 Mar 13 10:47 agis_schedconf.cvmfs.json
2025-03-13 13:40:22 (3828): Guest Log: drwx------. 4 atlas atlas      4096 Mar 13 10:47 pilot3
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas 159819906 Mar 13 17:39 HITS.43625193._001445.pool.root.1
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas      1029 Mar 13 17:39 memory_monitor_summary.json
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas   1589745 Mar 13 17:39 agis_ddmendpoints.agis.ALL.json
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas    428952 Mar 13 17:39 log.43625193._001445.job.log.tgz.1
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas        96 Mar 13 17:39 pilot_heartbeat.json
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas      7719 Mar 13 17:40 heartbeat.json
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas      4402 Mar 13 17:40 pilotlog.txt
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas   2555370 Mar 13 17:40 log.43625193._001445.job.log.1
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas       357 Mar 13 17:40 output.list
2025-03-13 13:40:22 (3828): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 13 17:40 runtime_log
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas   3000320 Mar 13 17:40 result.tar.gz
2025-03-13 13:40:22 (3828): Guest Log: -rw-r--r--. 1 atlas atlas     10952 Mar 13 17:40 runtime_log.err
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas       662 Mar 13 17:40 mBtLDmN8uC7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmkkjKDmI389Mn.diag
2025-03-13 13:40:22 (3828): Guest Log: Looking for outputfile HITS.43625193._001445.pool.root.1
2025-03-13 13:40:22 (3828): Guest Log: HITS file was successfully produced
2025-03-13 13:40:22 (3828): Guest Log: -rw-------. 1 atlas atlas 159819906 Mar 13 17:39 /home/atlas/RunAtlas/HITS.43625193._001445.pool.root.1
2025-03-13 13:40:23 (3828): Guest Log: Successfully finished the ATLAS job!
2025-03-13 13:40:23 (3828): Guest Log: Copying the results back to the shared directory!
2025-03-13 13:40:23 (3828): Guest Log:  *** Contents of shared directory: ***
2025-03-13 13:40:23 (3828): Guest Log: total 468480
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root 316358653 Mar 13 10:44 ATLAS.root_0
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root 159819906 Mar 13 17:40 HITS.pool.root.1
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root      8748 Mar 13 10:44 init_data.xml
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root    507033 Mar 13 10:43 input.tar.gz
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root   3000320 Mar 13 17:40 result.tar.gz
2025-03-13 13:40:23 (3828): Guest Log: -rwxrwxrwx. 1 root root     17571 Mar 13 10:43 start_atlas.sh
2025-03-13 13:40:23 (3828): Guest Log:  *** Success! Shutting down the machine. ***
2025-03-13 13:40:23 (3828): VM Completion File Detected.
2025-03-13 13:40:23 (3828): Powering off VM.
2025-03-13 13:40:24 (3828): Successfully stopped VM.
2025-03-13 13:40:24 (3828): Deregistering VM. (boinc_df5905b4799e26f1, slot#3)
2025-03-13 13:40:24 (3828): Removing network bandwidth throttle group from VM.
2025-03-13 13:40:24 (3828): Removing VM from VirtualBox.
13:40:29 (3828): called boinc_finish(0)

</stderr_txt>
]]>

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