Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:26:33 (2152995): wrapper (7.7.26015): starting
22:26:33 (2152995): wrapper: running run_atlas (--nthreads 8)
[2025-03-08 22:26:33] Arguments: --nthreads 8
[2025-03-08 22:26:33] Threads: 8
[2025-03-08 22:26:33] Checking for CVMFS
[2025-03-08 22:26:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-03-08 22:26:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-03-08 22:26:33] Running cvmfs_config stat atlas.cern.ch
[2025-03-08 22:26:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-03-08 22:26:33] 2.12.6.0 2898667 13461 323032 143471 3 90 16045854 37641217 31675 130560 0 1412370 98.518 5431530 28895 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-03-08 22:26:33] CVMFS is ok
[2025-03-08 22:26:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-03-08 22:26:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-03-08 22:26:33] Further information can be found at the LHC@home message board.
[2025-03-08 22:26:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-03-08 22:26:33] Checking for apptainer binary...
[2025-03-08 22:26:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-03-08 22:26:33] Running /usr/bin/apptainer --version
[2025-03-08 22:26:33] apptainer version 1.3.6-1.el9
[2025-03-08 22:26:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-03-08 22:26:34] c6-12-27-4.aglt2.org
[2025-03-08 22:26:34] apptainer works
[2025-03-08 22:26:34] Set ATHENA_PROC_NUMBER=8
[2025-03-08 22:26:34] Set ATHENA_CORE_NUMBER=8
[2025-03-08 22:26:34] Starting ATLAS job with PandaID=6548568057
[2025-03-08 22:26:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-03-09 00:04:18]  *** The last 200 lines of the pilot log: ***
[2025-03-09 00:04:18]  lfn=log.43558176._000149.job.log.tgz.1
[2025-03-09 00:04:18]  mtime=0
[2025-03-09 00:04:18]  protocol_id=None
[2025-03-09 00:04:18]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-03-09 00:04:18]  replicas=None
[2025-03-09 00:04:18]  scope=mc23_13p6TeV
[2025-03-09 00:04:18]  status=None
[2025-03-09 00:04:18]  status_code=0
[2025-03-09 00:04:18]  storage_token=
[2025-03-09 00:04:18]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6548568057/log.43558176._000149.job.log.tgz.1
[2025-03-09 00:04:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/2c/log.43558176._000149.job.log.tgz.1
[2025-03-09 00:04:18]  workdir=None
[2025-03-09 00:04:18] ]
[2025-03-09 00:04:18] 2025-03-09 05:03:50,227 | INFO     | transferring file log.43558176._000149.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6548568057/log.43558176._000149.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-03-09 00:04:18] 2025-03-09 05:03:50,227 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6548568057/log.43558176._000149.job.log.tgz.1 /tmp/boinchome/slots/0/log.43558176._000149.job
[2025-03-09 00:04:18] 2025-03-09 05:03:50,244 | INFO     | adding to output.list: log.43558176._000149.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fd/2c/log.43558176._000149.job.log.tg
[2025-03-09 00:04:18] 2025-03-09 05:03:50,244 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-03-09 00:04:18] 2025-03-09 05:03:50,244 | INFO     | summary of transferred files:
[2025-03-09 00:04:18] 2025-03-09 05:03:50,245 | INFO     |  -- lfn=log.43558176._000149.job.log.tgz.1, status_code=0, status=transferred
[2025-03-09 00:04:18] 2025-03-09 05:03:50,245 | INFO     | stage-out finished correctly
[2025-03-09 00:04:18] 2025-03-09 05:03:51,492 | INFO     | monitor loop #426: job 0:6548568057 is in state 'finished'
[2025-03-09 00:04:18] 2025-03-09 05:03:51,493 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-03-09 00:04:18] 2025-03-09 05:03:51,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-03-09 00:04:18] 2025-03-09 05:03:53,360 | INFO     | job 6548568057 has state=finished
[2025-03-09 00:04:18] 2025-03-09 05:03:53,360 | INFO     | preparing for final server update for job 6548568057 in state='finished'
[2025-03-09 00:04:18] 2025-03-09 05:03:53,435 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-03-09 00:04:18] 2025-03-09 05:03:53,435 | INFO     | this job has now completed (state=finished)
[2025-03-09 00:04:18] 2025-03-09 05:03:53,436 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-03-09 00:04:18] 2025-03-09 05:03:53,436 | INFO     | log transfer has been attempted: DONE
[2025-03-09 00:04:18] 2025-03-09 05:03:53,436 | INFO     | job 6548568057 has finished - writing final server update
[2025-03-09 00:04:18] 2025-03-09 05:03:53,436 | INFO     | total number of processed events: 400 (read)
[2025-03-09 00:04:18] 2025-03-09 05:03:53,454 | INFO     | executing command: lscpu
[2025-03-09 00:04:18] 2025-03-09 05:03:53,510 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-03-09 00:04:18] 2025-03-09 05:03:53,553 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-03-09 00:04:18] 2025-03-09 05:03:53,996 | INFO     | monitor loop #427: job 0:6548568057 is in state 'finished'
[2025-03-09 00:04:18] 2025-03-09 05:03:53,997 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-03-09 00:04:18] 2025-03-09 05:03:56,499 | INFO     | monitor loop #428: job 0:6548568057 is in state 'finished'
[2025-03-09 00:04:18] 2025-03-09 05:03:56,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,799 | INFO     | CPU arch script returned: x86-64-v4
[2025-03-09 00:04:18] 2025-03-09 05:03:57,800 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6548568057/memory_monitor_summary.json (trf name=prmon)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,800 | INFO     | extracted standard info from prmon json
[2025-03-09 00:04:18] 2025-03-09 05:03:57,800 | INFO     | extracted standard memory fields from prmon json
[2025-03-09 00:04:18] 2025-03-09 05:03:57,800 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-03-09 00:04:18] 2025-03-09 05:03:57,801 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-03-09 00:04:18] 2025-03-09 05:03:57,801 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-03-09 00:04:18] 2025-03-09 05:03:57,802 | INFO     | fitting pss+swap vs Time
[2025-03-09 00:04:18] 2025-03-09 05:03:57,802 | INFO     | model: linear, x: [1741491134.0, 1741491195.0, 1741491256.0, 1741491317.0, 1741491378.0, 1741491439.0, 1741491500.0, 1741491561.0, 1741491622.0, 1741491683.0, 1741
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | sum of square deviations: 218571540.0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | sum of deviations: 6634503411.0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | mean x: 1741493818.0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | mean y: 2334735.842696629
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | -- intersect: -52858832256.69628
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | intersect: -52858832256.69628
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | chi2: 2.4759304949729506
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | -- intersect: -52858832256.69628
[2025-03-09 00:04:18] 2025-03-09 05:03:57,803 | INFO     | current memory leak: 30.35 B/s (using 89 data points, chi2=2.48)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | ..............................
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . Timing measurements:
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . get job = 0 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . initial setup = 3 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . payload setup = 5 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . stage-in = 0 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . payload execution = 5800 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . stage-out = 0 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | . log creation = 0 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,804 | INFO     | ..............................
[2025-03-09 00:04:18] 2025-03-09 05:03:57,863 | INFO     | 
[2025-03-09 00:04:18] 2025-03-09 05:03:57,863 | INFO     | job summary report
[2025-03-09 00:04:18] 2025-03-09 05:03:57,863 | INFO     | --------------------------------------------------
[2025-03-09 00:04:18] 2025-03-09 05:03:57,863 | INFO     | PanDA job id: 6548568057
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | task id: 43558176
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | errors: (none)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | status: LOG_TRANSFER = DONE 
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | pilot state: finished 
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | transexitcode: 0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | exeerrorcode: 0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | exeerrordiag: 
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | exitcode: 0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | exitmsg: OK
[2025-03-09 00:04:18] 2025-03-09 05:03:57,864 | INFO     | cpuconsumptiontime: 39255 s
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | nevents: 400
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | neventsw: 0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | pid: 2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | pgrp: 2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | corecount: 8
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | event service: False
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | sizes: {0: 2378369, 4: 2378575, 11: 2378603, 5808: 2405209, 5809: 2405208, 5810: 2414205, 5812: 2414389, 5818: 2414559}
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | --------------------------------------------------
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | 
[2025-03-09 00:04:18] 2025-03-09 05:03:57,865 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-03-09 00:04:18] 2025-03-09 05:03:57,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,889 | INFO     | queue payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,889 | INFO     | queue data_in had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,889 | INFO     | queue data_out had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,890 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,891 | INFO     | queue messages had 0 job(s) [purged]
[2025-03-09 00:04:18] 2025-03-09 05:03:57,891 | INFO     | job 6548568057 has completed (purged errors)
[2025-03-09 00:04:18] 2025-03-09 05:03:57,891 | INFO     | overall cleanup function is called
[2025-03-09 00:04:18] 2025-03-09 05:03:58,899 | INFO     | --- collectZombieJob: --- 10, [2175910]
[2025-03-09 00:04:18] 2025-03-09 05:03:58,900 | INFO     | zombie collector waiting for pid 2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:58,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-03-09 00:04:18] 2025-03-09 05:03:58,900 | INFO     | collected zombie processes
[2025-03-09 00:04:18] 2025-03-09 05:03:58,900 | INFO     | will attempt to kill all subprocesses of pid=2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:59,063 | INFO     | PID=2158865 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-03-09 00:04:18] 2025-03-09 05:03:59,063 | INFO     | .. there are 47 such processes running
[2025-03-09 00:04:18] 2025-03-09 05:03:59,171 | INFO     | process IDs to be killed: [2175910] (in reverse order)
[2025-03-09 00:04:18] 2025-03-09 05:03:59,322 | WARNING  | found no corresponding commands to process id(s)
[2025-03-09 00:04:18] 2025-03-09 05:03:59,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-03-09 00:04:18] 2025-03-09 05:03:59,342 | INFO     | did not find any defunct processes belonging to 2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:59,365 | INFO     | did not find any defunct processes belonging to 2175910
[2025-03-09 00:04:18] 2025-03-09 05:03:59,366 | INFO     | ready for new job
[2025-03-09 00:04:18] 2025-03-09 05:03:59,367 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-03-09 00:04:18] 2025-03-09 05:03:59,368 | INFO     | **************************************
[2025-03-09 00:04:18] 2025-03-09 05:03:59,369 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-03-09 00:04:18] 2025-03-09 05:03:59,369 | INFO     | **************************************
[2025-03-09 00:04:18] 2025-03-09 05:03:59,369 | INFO     | 
[2025-03-09 00:04:18] 2025-03-09 05:03:59,386 | INFO     | architecture information:
[2025-03-09 00:04:18] 2025-03-09 05:03:59,386 | INFO     | executing command: cat /etc/os-release
[2025-03-09 00:04:18] 2025-03-09 05:03:59,403 | INFO     | cat /etc/os-release:
[2025-03-09 00:04:18] NAME="CentOS Linux"
[2025-03-09 00:04:18] VERSION="7 (Core)"
[2025-03-09 00:04:18] ID="centos"
[2025-03-09 00:04:18] ID_LIKE="rhel fedora"
[2025-03-09 00:04:18] VERSION_ID="7"
[2025-03-09 00:04:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-03-09 00:04:18] ANSI_COLOR="0;31"
[2025-03-09 00:04:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-03-09 00:04:18] HOME_URL="https://www.centos.org/"
[2025-03-09 00:04:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-03-09 00:04:18] 
[2025-03-09 00:04:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-03-09 00:04:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-03-09 00:04:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-03-09 00:04:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-03-09 00:04:18] 
[2025-03-09 00:04:18] 2025-03-09 05:03:59,403 | INFO     | **************************************
[2025-03-09 00:04:18] 2025-03-09 05:03:59,906 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-03-09 00:04:18] 2025-03-09 05:03:59,921 | INFO     | sufficient remaining disk space (96443826176 B)
[2025-03-09 00:04:18] 2025-03-09 05:03:59,922 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-03-09 00:04:18] 2025-03-09 05:03:59,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-03-09 00:04:18] 2025-03-09 05:03:59,922 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-03-09 00:04:18] 2025-03-09 05:03:59,922 | INFO     | found 0 job(s) in 20 queues
[2025-03-09 00:04:18] 2025-03-09 05:03:59,923 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-03-09 00:04:18] 2025-03-09 05:03:59,923 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-03-09 00:04:18] 2025-03-09 05:04:00,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-03-09 00:04:18] 2025-03-09 05:04:00,008 | INFO     | aborting loop
[2025-03-09 00:04:18] 2025-03-09 05:04:00,273 | INFO     | all job control threads have been joined
[2025-03-09 00:04:18] 2025-03-09 05:04:00,668 | INFO     | all data control threads have been joined
[2025-03-09 00:04:18] 2025-03-09 05:04:00,774 | INFO     | all payload control threads have been joined
[2025-03-09 00:04:18] 2025-03-09 05:04:00,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-03-09 00:04:18] 2025-03-09 05:04:00,927 | INFO     | [job] retrieve thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,013 | INFO     | [job] job monitor thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,278 | INFO     | [job] control thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,336 | INFO     | [payload] execute_payloads thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,371 | INFO     | [data] copytool_in thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,468 | INFO     | [job] validate thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,673 | INFO     | [data] control thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,714 | INFO     | [payload] failed_post thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,779 | INFO     | [payload] control thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,790 | INFO     | [payload] validate_pre thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:01,982 | INFO     | [job] create_data_payload thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:02,322 | INFO     | [payload] validate_post thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:02,340 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-03-09 00:04:18] 2025-03-09 05:04:02,831 | INFO     | [data] copytool_out thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:02,873 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-03-09 00:04:18] 2025-03-09 05:04:03,878 | INFO     | [job] queue monitor thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:06,346 | INFO     | [data] queue_monitor thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:10,786 | INFO     | job.realtimelogging is not enabled
[2025-03-09 00:04:18] 2025-03-09 05:04:11,792 | INFO     | [payload] run_realtimelog thread has finished
[2025-03-09 00:04:18] 2025-03-09 05:04:13,382 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140212344567616)>', '<ExcThread(monitor, started 140211841373952)>']
[2025-03-09 00:04:18] 2025-03-09 05:04:13,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-03-09 00:04:18] 2025-03-09 05:04:13,991 | INFO     | [monitor] control thread has ended
[2025-03-09 00:04:18] 2025-03-09 05:04:18,408 | INFO     | all workflow threads have been joined
[2025-03-09 00:04:18] 2025-03-09 05:04:18,408 | INFO     | end of generic workflow (traces error code: 0)
[2025-03-09 00:04:18] 2025-03-09 05:04:18,409 | INFO     | traces error code: 0
[2025-03-09 00:04:18] 2025-03-09 05:04:18,409 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-03-09 00:04:18] 2025-03-09 05:04:18,633 [wrapper] ==== pilot stdout END ====
[2025-03-09 00:04:18] 2025-03-09 05:04:18,636 [wrapper] ==== wrapper stdout RESUME ====
[2025-03-09 00:04:18] 2025-03-09 05:04:18,639 [wrapper] pilotpid: 2158865
[2025-03-09 00:04:18] 2025-03-09 05:04:18,644 [wrapper] Pilot exit status: 0
[2025-03-09 00:04:18] 2025-03-09 05:04:18,656 [wrapper] pandaids: 6548568057
[2025-03-09 00:04:18] 2025-03-09 05:04:18,761 [wrapper] cleanup supervisor_pilot 2941862 2158866
[2025-03-09 00:04:18] 2025-03-09 05:04:18,764 [wrapper] Test setup, not cleaning
[2025-03-09 00:04:18] 2025-03-09 05:04:18,768 [wrapper] apfmon messages muted
[2025-03-09 00:04:18] 2025-03-09 05:04:18,771 [wrapper] ==== wrapper stdout END ====
[2025-03-09 00:04:18] 2025-03-09 05:04:18,773 [wrapper] ==== wrapper stderr END ====
[2025-03-09 00:04:18]  *** Error codes and diagnostics ***
[2025-03-09 00:04:18]     "exeErrorCode": 0,
[2025-03-09 00:04:18]     "exeErrorDiag": "",
[2025-03-09 00:04:18]     "pilotErrorCode": 0,
[2025-03-09 00:04:18]     "pilotErrorDiag": "",
[2025-03-09 00:04:18]  *** Listing of results directory ***
[2025-03-09 00:04:18] total 424812
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas    491065 Mar  8 21:25 pilot3.tar.gz
[2025-03-09 00:04:18] -rwx------. 1 boincer umatlas     35865 Mar  8 21:26 runpilot2-wrapper.sh
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas      5118 Mar  8 21:26 queuedata.json
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas       100 Mar  8 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-03-09 00:04:18] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 22:26 run_atlas
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas       105 Mar  8 22:26 job.xml
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas 270742637 Mar  8 22:26 EVNT.43558174._000006.pool.root.1
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 22:26 start_atlas.sh
[2025-03-09 00:04:18] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 22:26 shared
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas    503534 Mar  8 22:26 input.tar.gz
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas         0 Mar  8 22:26 boinc_lockfile
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas      2543 Mar  8 22:26 pandaJob.out
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas       467 Mar  8 22:26 setup.sh.local
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas    992045 Mar  8 22:26 agis_schedconf.cvmfs.json
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas   1579410 Mar  8 22:26 agis_ddmendpoints.agis.ALL.json
[2025-03-09 00:04:18] drwx------. 4 boincer umatlas      4096 Mar  8 22:26 pilot3
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas      6858 Mar  9 00:03 init_data.xml
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas       529 Mar  9 00:03 boinc_task_state.xml
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas 158592174 Mar  9 00:03 HITS.43558176._000149.pool.root.1
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas        95 Mar  9 00:03 pilot_heartbeat.json
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas      1055 Mar  9 00:03 memory_monitor_summary.json
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas    372468 Mar  9 00:03 log.43558176._000149.job.log.tgz.1
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas      7758 Mar  9 00:03 heartbeat.json
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas      8192 Mar  9 00:04 boinc_mmap_file
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas        27 Mar  9 00:04 wrapper_checkpoint.txt
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas      4410 Mar  9 00:04 pilotlog.txt
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas    563697 Mar  9 00:04 log.43558176._000149.job.log.1
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas       357 Mar  9 00:04 output.list
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas       620 Mar  9 00:04 runtime_log
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas    952320 Mar  9 00:04 result.tar.gz
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas     11428 Mar  9 00:04 runtime_log.err
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas       657 Mar  9 00:04 PqGKDmVYLB7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmBR0KDmZ3r05n.diag
[2025-03-09 00:04:18] -rw-r--r--. 1 boincer umatlas     21802 Mar  9 00:04 stderr.txt
[2025-03-09 00:04:18] HITS file was successfully produced:
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas 158592174 Mar  9 00:03 shared/HITS.pool.root.1
[2025-03-09 00:04:18]  *** Contents of shared directory: ***
[2025-03-09 00:04:18] total 420724
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas 270742637 Mar  8 22:26 ATLAS.root_0
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 22:26 start_atlas.sh
[2025-03-09 00:04:18] -rw-r--r--. 2 boincer umatlas    503534 Mar  8 22:26 input.tar.gz
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas 158592174 Mar  9 00:03 HITS.pool.root.1
[2025-03-09 00:04:18] -rw-------. 1 boincer umatlas    952320 Mar  9 00:04 result.tar.gz
00:04:20 (2152995): run_atlas exited; CPU time 39259.446316
00:04:20 (2152995): called boinc_finish(0)

</stderr_txt>
]]>

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