Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:47:18 (2807249): wrapper (7.7.26015): starting
21:47:18 (2807249): wrapper: running run_atlas (--nthreads 9)
[2025-03-08 21:47:18] Arguments: --nthreads 9
[2025-03-08 21:47:18] Threads: 9
[2025-03-08 21:47:18] Checking for CVMFS
[2025-03-08 21:47:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-03-08 21:47:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-03-08 21:47:18] Running cvmfs_config stat atlas.cern.ch
[2025-03-08 21:47:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-03-08 21:47:18] 2.12.6.0 2555540 153194 429296 143469 3 217 32358789 40960001 23406 130560 0 6820095 99.393 11128387 21079 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-03-08 21:47:18] CVMFS is ok
[2025-03-08 21:47:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-03-08 21:47:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-03-08 21:47:18] Further information can be found at the LHC@home message board.
[2025-03-08 21:47:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-03-08 21:47:18] Checking for apptainer binary...
[2025-03-08 21:47:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-03-08 21:47:18] Running /usr/bin/apptainer --version
[2025-03-08 21:47:18] apptainer version 1.3.6-1.el9
[2025-03-08 21:47:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-03-08 21:47:18] c6-8-12-3.aglt2.org
[2025-03-08 21:47:18] apptainer works
[2025-03-08 21:47:18] Set ATHENA_PROC_NUMBER=9
[2025-03-08 21:47:18] Set ATHENA_CORE_NUMBER=9
[2025-03-08 21:47:18] Starting ATLAS job with PandaID=6548568158
[2025-03-08 21:47:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-03-08 23:18:02]  *** The last 200 lines of the pilot log: ***
[2025-03-08 23:18:02]  lfn=log.43558233._000048.job.log.tgz.1
[2025-03-08 23:18:02]  mtime=0
[2025-03-08 23:18:02]  protocol_id=None
[2025-03-08 23:18:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-03-08 23:18:02]  replicas=None
[2025-03-08 23:18:02]  scope=mc23_13p6TeV
[2025-03-08 23:18:02]  status=None
[2025-03-08 23:18:02]  status_code=0
[2025-03-08 23:18:02]  storage_token=
[2025-03-08 23:18:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6548568158/log.43558233._000048.job.log.tgz.1
[2025-03-08 23:18:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/8a/log.43558233._000048.job.log.tgz.1
[2025-03-08 23:18:02]  workdir=None
[2025-03-08 23:18:02] ]
[2025-03-08 23:18:02] 2025-03-09 04:17:37,061 | INFO     | transferring file log.43558233._000048.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6548568158/log.43558233._000048.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-03-08 23:18:02] 2025-03-09 04:17:37,061 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6548568158/log.43558233._000048.job.log.tgz.1 /tmp/boinchome/slots/0/log.43558233._000048.job
[2025-03-08 23:18:02] 2025-03-09 04:17:37,078 | INFO     | adding to output.list: log.43558233._000048.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/8a/log.43558233._000048.job.log.tg
[2025-03-08 23:18:02] 2025-03-09 04:17:37,079 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-03-08 23:18:02] 2025-03-09 04:17:37,079 | INFO     | summary of transferred files:
[2025-03-08 23:18:02] 2025-03-09 04:17:37,079 | INFO     |  -- lfn=log.43558233._000048.job.log.tgz.1, status_code=0, status=transferred
[2025-03-08 23:18:02] 2025-03-09 04:17:37,079 | INFO     | stage-out finished correctly
[2025-03-08 23:18:02] 2025-03-09 04:17:37,603 | INFO     | PID=2811572 has CPU usage=6.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-03-08 23:18:02] 2025-03-09 04:17:37,603 | INFO     | .. there are 33 such processes running
[2025-03-08 23:18:02] 2025-03-09 04:17:38,061 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-03-08 23:18:02] 2025-03-09 04:17:38,138 | INFO     | job 6548568158 has state=finished
[2025-03-08 23:18:02] 2025-03-09 04:17:38,138 | INFO     | preparing for final server update for job 6548568158 in state='finished'
[2025-03-08 23:18:02] 2025-03-09 04:17:38,207 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-03-08 23:18:02] 2025-03-09 04:17:38,208 | INFO     | this job has now completed (state=finished)
[2025-03-08 23:18:02] 2025-03-09 04:17:38,208 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-03-08 23:18:02] 2025-03-09 04:17:38,208 | INFO     | log transfer has been attempted: DONE
[2025-03-08 23:18:02] 2025-03-09 04:17:38,208 | INFO     | job 6548568158 has finished - writing final server update
[2025-03-08 23:18:02] 2025-03-09 04:17:38,208 | INFO     | total number of processed events: 400 (read)
[2025-03-08 23:18:02] 2025-03-09 04:17:38,225 | INFO     | executing command: lscpu
[2025-03-08 23:18:02] 2025-03-09 04:17:38,278 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2025-03-08 23:18:02] 2025-03-09 04:17:38,310 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-03-08 23:18:02] 2025-03-09 04:17:42,189 | INFO     | CPU arch script returned: x86-64-v4
[2025-03-08 23:18:02] 2025-03-09 04:17:42,190 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6548568158/memory_monitor_summary.json (trf name=prmon)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,197 | INFO     | extracted standard info from prmon json
[2025-03-08 23:18:02] 2025-03-09 04:17:42,197 | INFO     | extracted standard memory fields from prmon json
[2025-03-08 23:18:02] 2025-03-09 04:17:42,198 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-03-08 23:18:02] 2025-03-09 04:17:42,199 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-03-08 23:18:02] 2025-03-09 04:17:42,199 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-03-08 23:18:02] 2025-03-09 04:17:42,201 | INFO     | fitting pss+swap vs Time
[2025-03-08 23:18:02] 2025-03-09 04:17:42,202 | INFO     | model: linear, x: [1741488781.0, 1741488842.0, 1741488903.0, 1741488964.0, 1741489025.0, 1741489086.0, 1741489147.0, 1741489208.0, 1741489269.0, 1741489330.0, 1741
[2025-03-08 23:18:02] 2025-03-09 04:17:42,202 | INFO     | sum of square deviations: 170944600.5
[2025-03-08 23:18:02] 2025-03-09 04:17:42,202 | INFO     | sum of deviations: 15262599458.5
[2025-03-08 23:18:02] 2025-03-09 04:17:42,202 | INFO     | mean x: 1741491251.5
[2025-03-08 23:18:02] 2025-03-09 04:17:42,202 | INFO     | mean y: 2279631.93902439
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | -- intersect: -155484839319.9485
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | intersect: -155484839319.9485
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | chi2: 1.2164485148932556
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | -- intersect: -155484839319.9485
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | current memory leak: 89.28 B/s (using 82 data points, chi2=1.22)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,203 | INFO     | ..............................
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . Timing measurements:
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . get job = 0 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . initial setup = 4 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . payload setup = 5 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . stage-in = 0 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . payload execution = 5379 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . stage-out = 0 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | . log creation = 0 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,204 | INFO     | ..............................
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | 
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | job summary report
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | --------------------------------------------------
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | PanDA job id: 6548568158
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | task id: 43558233
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | errors: (none)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | pilot state: finished 
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | transexitcode: 0
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | exeerrorcode: 0
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | exeerrordiag: 
[2025-03-08 23:18:02] 2025-03-09 04:17:42,284 | INFO     | exitcode: 0
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | exitmsg: OK
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | cpuconsumptiontime: 37631 s
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | nevents: 400
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | neventsw: 0
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | pid: 2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | pgrp: 2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | corecount: 9
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | event service: False
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | sizes: {0: 2378389, 4: 2378595, 11: 2378623, 5389: 2405080, 5391: 2414021, 5392: 2414077, 5396: 2414375}
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | --------------------------------------------------
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | 
[2025-03-08 23:18:02] 2025-03-09 04:17:42,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-03-08 23:18:02] 2025-03-09 04:17:42,303 | INFO     | queue jobs had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,303 | INFO     | queue payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,303 | INFO     | queue data_in had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue data_out had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,305 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,305 | INFO     | queue messages had 0 job(s) [purged]
[2025-03-08 23:18:02] 2025-03-09 04:17:42,305 | INFO     | job 6548568158 has completed (purged errors)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,305 | INFO     | overall cleanup function is called
[2025-03-08 23:18:02] 2025-03-09 04:17:42,432 | WARNING  | process 2819718 can no longer be monitored (due to stat problems) - aborting
[2025-03-08 23:18:02] 2025-03-09 04:17:42,725 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,725 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-03-08 23:18:02] 2025-03-09 04:17:42,951 | INFO     | number of running child processes to parent process 2819718: 1
[2025-03-08 23:18:02] 2025-03-09 04:17:42,951 | INFO     | maximum number of monitored processes: 6
[2025-03-08 23:18:02] 2025-03-09 04:17:42,951 | INFO     | aborting job monitoring since job object (job id=6548568158) has expired
[2025-03-08 23:18:02] 2025-03-09 04:17:43,313 | INFO     | --- collectZombieJob: --- 10, [2819718]
[2025-03-08 23:18:02] 2025-03-09 04:17:43,313 | INFO     | zombie collector waiting for pid 2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:43,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-03-08 23:18:02] 2025-03-09 04:17:43,314 | INFO     | collected zombie processes
[2025-03-08 23:18:02] 2025-03-09 04:17:43,314 | INFO     | will attempt to kill all subprocesses of pid=2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:43,533 | INFO     | process IDs to be killed: [2819718] (in reverse order)
[2025-03-08 23:18:02] 2025-03-09 04:17:43,616 | WARNING  | found no corresponding commands to process id(s)
[2025-03-08 23:18:02] 2025-03-09 04:17:43,617 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-03-08 23:18:02] 2025-03-09 04:17:43,631 | INFO     | did not find any defunct processes belonging to 2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:43,646 | INFO     | did not find any defunct processes belonging to 2819718
[2025-03-08 23:18:02] 2025-03-09 04:17:43,646 | INFO     | ready for new job
[2025-03-08 23:18:02] 2025-03-09 04:17:43,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-03-08 23:18:02] 2025-03-09 04:17:43,648 | INFO     | **************************************
[2025-03-08 23:18:02] 2025-03-09 04:17:43,649 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-03-08 23:18:02] 2025-03-09 04:17:43,649 | INFO     | **************************************
[2025-03-08 23:18:02] 2025-03-09 04:17:43,649 | INFO     | 
[2025-03-08 23:18:02] 2025-03-09 04:17:43,663 | INFO     | architecture information:
[2025-03-08 23:18:02] 2025-03-09 04:17:43,664 | INFO     | executing command: cat /etc/os-release
[2025-03-08 23:18:02] 2025-03-09 04:17:43,677 | INFO     | cat /etc/os-release:
[2025-03-08 23:18:02] NAME="CentOS Linux"
[2025-03-08 23:18:02] VERSION="7 (Core)"
[2025-03-08 23:18:02] ID="centos"
[2025-03-08 23:18:02] ID_LIKE="rhel fedora"
[2025-03-08 23:18:02] VERSION_ID="7"
[2025-03-08 23:18:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-03-08 23:18:02] ANSI_COLOR="0;31"
[2025-03-08 23:18:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-03-08 23:18:02] HOME_URL="https://www.centos.org/"
[2025-03-08 23:18:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-03-08 23:18:02] 
[2025-03-08 23:18:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-03-08 23:18:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-03-08 23:18:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-03-08 23:18:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-03-08 23:18:02] 
[2025-03-08 23:18:02] 2025-03-09 04:17:43,678 | INFO     | **************************************
[2025-03-08 23:18:02] 2025-03-09 04:17:44,180 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-03-08 23:18:02] 2025-03-09 04:17:44,194 | INFO     | sufficient remaining disk space (56323211264 B)
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-03-08 23:18:02] 2025-03-09 04:17:44,195 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-03-08 23:18:02] 2025-03-09 04:17:44,196 | INFO     | aborting loop
[2025-03-08 23:18:02] 2025-03-09 04:17:44,196 | INFO     | found 0 job(s) in 20 queues
[2025-03-08 23:18:02] 2025-03-09 04:17:44,197 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-03-08 23:18:02] 2025-03-09 04:17:44,197 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-03-08 23:18:02] 2025-03-09 04:17:44,390 | INFO     | all data control threads have been joined
[2025-03-08 23:18:02] 2025-03-09 04:17:45,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-03-08 23:18:02] 2025-03-09 04:17:45,200 | INFO     | [job] retrieve thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:45,201 | INFO     | [job] job monitor thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:45,201 | INFO     | [job] queue monitor thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:45,240 | INFO     | all job control threads have been joined
[2025-03-08 23:18:02] 2025-03-09 04:17:45,392 | INFO     | [data] control thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:45,583 | INFO     | all payload control threads have been joined
[2025-03-08 23:18:02] 2025-03-09 04:17:45,801 | INFO     | [payload] validate_post thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:45,933 | INFO     | [job] validate thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,065 | INFO     | [payload] failed_post thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,239 | INFO     | [payload] validate_pre thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,245 | INFO     | [job] control thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,507 | INFO     | [data] copytool_in thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,588 | INFO     | [payload] control thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,653 | INFO     | [payload] execute_payloads thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:46,683 | INFO     | [job] create_data_payload thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:47,177 | INFO     | [data] copytool_out thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:48,202 | INFO     | [data] queue_monitor thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:54,589 | INFO     | job.realtimelogging is not enabled
[2025-03-08 23:18:02] 2025-03-09 04:17:55,594 | INFO     | [payload] run_realtimelog thread has finished
[2025-03-08 23:18:02] 2025-03-09 04:17:56,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831435343680)>', '<ExcThread(monitor, started 139830931461888)>']
[2025-03-08 23:18:02] 2025-03-09 04:17:57,263 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-03-08 23:18:02] 2025-03-09 04:17:57,263 | INFO     | [monitor] control thread has ended
[2025-03-08 23:18:02] 2025-03-09 04:18:01,702 | INFO     | all workflow threads have been joined
[2025-03-08 23:18:02] 2025-03-09 04:18:01,702 | INFO     | end of generic workflow (traces error code: 0)
[2025-03-08 23:18:02] 2025-03-09 04:18:01,702 | INFO     | traces error code: 0
[2025-03-08 23:18:02] 2025-03-09 04:18:01,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-03-08 23:18:02] 2025-03-09 04:18:01,883 [wrapper] ==== pilot stdout END ====
[2025-03-08 23:18:02] 2025-03-09 04:18:01,885 [wrapper] ==== wrapper stdout RESUME ====
[2025-03-08 23:18:02] 2025-03-09 04:18:01,888 [wrapper] pilotpid: 2811572
[2025-03-08 23:18:02] 2025-03-09 04:18:01,891 [wrapper] Pilot exit status: 0
[2025-03-08 23:18:02] 2025-03-09 04:18:01,901 [wrapper] pandaids: 6548568158
[2025-03-08 23:18:02] 2025-03-09 04:18:01,981 [wrapper] cleanup supervisor_pilot 3389675 2811573
[2025-03-08 23:18:02] 2025-03-09 04:18:01,984 [wrapper] Test setup, not cleaning
[2025-03-08 23:18:02] 2025-03-09 04:18:01,989 [wrapper] apfmon messages muted
[2025-03-08 23:18:02] 2025-03-09 04:18:01,990 [wrapper] ==== wrapper stdout END ====
[2025-03-08 23:18:02] 2025-03-09 04:18:01,992 [wrapper] ==== wrapper stderr END ====
[2025-03-08 23:18:02]  *** Error codes and diagnostics ***
[2025-03-08 23:18:02]     "exeErrorCode": 0,
[2025-03-08 23:18:02]     "exeErrorDiag": "",
[2025-03-08 23:18:02]     "pilotErrorCode": 0,
[2025-03-08 23:18:02]     "pilotErrorDiag": "",
[2025-03-08 23:18:02]  *** Listing of results directory ***
[2025-03-08 23:18:02] total 432108
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas    491065 Mar  8 21:25 pilot3.tar.gz
[2025-03-08 23:18:02] -rwx------. 1 boincer umatlas     35865 Mar  8 21:29 runpilot2-wrapper.sh
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas      5118 Mar  8 21:31 queuedata.json
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas       100 Mar  8 21:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-03-08 23:18:02] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 21:47 run_atlas
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas       105 Mar  8 21:47 job.xml
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas 273610107 Mar  8 21:47 EVNT.43558231._000002.pool.root.1
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 21:47 start_atlas.sh
[2025-03-08 23:18:02] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 21:47 shared
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas    503559 Mar  8 21:47 input.tar.gz
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas         0 Mar  8 21:47 boinc_lockfile
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas      2563 Mar  8 21:47 pandaJob.out
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas       467 Mar  8 21:47 setup.sh.local
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas    992045 Mar  8 21:47 agis_schedconf.cvmfs.json
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas   1579410 Mar  8 21:47 agis_ddmendpoints.agis.ALL.json
[2025-03-08 23:18:02] drwx------. 4 boincer umatlas      4096 Mar  8 21:47 pilot3
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas      6839 Mar  8 23:09 init_data.xml
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas       529 Mar  8 23:17 boinc_task_state.xml
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas 163245556 Mar  8 23:17 HITS.43558233._000048.pool.root.1
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas        95 Mar  8 23:17 pilot_heartbeat.json
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas      1041 Mar  8 23:17 memory_monitor_summary.json
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas    382719 Mar  8 23:17 log.43558233._000048.job.log.tgz.1
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas      7727 Mar  8 23:17 heartbeat.json
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas      8192 Mar  8 23:18 boinc_mmap_file
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas        27 Mar  8 23:18 wrapper_checkpoint.txt
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas      4410 Mar  8 23:18 pilotlog.txt
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas    525231 Mar  8 23:18 log.43558233._000048.job.log.1
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas       357 Mar  8 23:18 output.list
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas       620 Mar  8 23:18 runtime_log
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas    931840 Mar  8 23:18 result.tar.gz
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas     11423 Mar  8 23:18 runtime_log.err
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas       654 Mar  8 23:18 J6TKDmbbLB7n9Rq4apOajLDm4fhM0noT9bVoFjIUDmLAjKDmxK9U1m.diag
[2025-03-08 23:18:02] -rw-r--r--. 1 boincer umatlas     21786 Mar  8 23:18 stderr.txt
[2025-03-08 23:18:02] HITS file was successfully produced:
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas 163245556 Mar  8 23:17 shared/HITS.pool.root.1
[2025-03-08 23:18:02]  *** Contents of shared directory: ***
[2025-03-08 23:18:02] total 428044
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas 273610107 Mar  8 21:47 ATLAS.root_0
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 21:47 start_atlas.sh
[2025-03-08 23:18:02] -rw-r--r--. 2 boincer umatlas    503559 Mar  8 21:47 input.tar.gz
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas 163245556 Mar  8 23:17 HITS.pool.root.1
[2025-03-08 23:18:02] -rw-------. 1 boincer umatlas    931840 Mar  8 23:18 result.tar.gz
23:18:03 (2807249): run_atlas exited; CPU time 37561.127316
23:18:03 (2807249): called boinc_finish(0)

</stderr_txt>
]]>

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