Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:31:37 (1395490): wrapper (7.7.26015): starting
21:31:37 (1395490): wrapper: running run_atlas (--nthreads 8)
[2025-03-08 21:31:37] Arguments: --nthreads 8
[2025-03-08 21:31:37] Threads: 8
[2025-03-08 21:31:37] Checking for CVMFS
[2025-03-08 21:31:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-03-08 21:31:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-03-08 21:31:37] Running cvmfs_config stat atlas.cern.ch
[2025-03-08 21:31:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-03-08 21:31:37] 2.12.6.0 3794790 36986 363060 143469 1 376 8030212 37641216 33151 130560 0 316719 97.387 1887655 31494 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-03-08 21:31:37] CVMFS is ok
[2025-03-08 21:31:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-03-08 21:31:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-03-08 21:31:37] Further information can be found at the LHC@home message board.
[2025-03-08 21:31:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-03-08 21:31:37] Checking for apptainer binary...
[2025-03-08 21:31:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-03-08 21:31:37] Running /usr/bin/apptainer --version
[2025-03-08 21:31:37] apptainer version 1.3.6-1.el9
[2025-03-08 21:31:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-03-08 21:31:37] c6-2-11-1.aglt2.org
[2025-03-08 21:31:37] apptainer works
[2025-03-08 21:31:37] Set ATHENA_PROC_NUMBER=8
[2025-03-08 21:31:37] Set ATHENA_CORE_NUMBER=8
[2025-03-08 21:31:37] Starting ATLAS job with PandaID=6548566161
[2025-03-08 21:31:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-03-09 00:13:00]  *** The last 200 lines of the pilot log: ***
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | mean y: 2200809.9673202615
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | -- intersect: -82507981389.08182
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | intersect: -82507981389.08182
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | chi2: 2.509079053389924
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | current chi2=2.509079053389924 (change=52.69004493252694 %)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | model: linear, x: [1741488140.0, 1741488201.0, 1741488262.0, 1741488323.0, 1741488384.0, 1741488445.0, 1741488506.0, 1741488567.0, 1741488628.0, 1741488690.0, 1741
[2025-03-09 00:13:00] 2025-03-09 05:12:39,979 | INFO     | sum of square deviations: 1005145758.8108102
[2025-03-09 00:13:00] 2025-03-09 05:12:39,980 | INFO     | sum of deviations: 23804583929.324326
[2025-03-09 00:13:00] 2025-03-09 05:12:39,980 | INFO     | mean x: 1741492623.6216216
[2025-03-09 00:13:00] 2025-03-09 05:12:39,980 | INFO     | mean y: 2242530.1486486485
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | -- intersect: -41241036823.03312
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | intersect: -41241036823.03312
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | chi2: 0.9249538146780403
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | current chi2=0.9249538146780403 (change=63.13572450304547 %)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | model: linear, x: [1741488445.0, 1741488506.0, 1741488567.0, 1741488628.0, 1741488690.0, 1741488750.0, 1741488811.0, 1741488872.0, 1741488934.0, 1741488994.0, 1741
[2025-03-09 00:13:00] 2025-03-09 05:12:39,981 | INFO     | sum of square deviations: 906664003.7342653
[2025-03-09 00:13:00] 2025-03-09 05:12:39,982 | INFO     | sum of deviations: 4553806972.727274
[2025-03-09 00:13:00] 2025-03-09 05:12:39,982 | INFO     | mean x: 1741492776.125874
[2025-03-09 00:13:00] 2025-03-09 05:12:39,982 | INFO     | mean y: 2272120.1818181816
[2025-03-09 00:13:00] 2025-03-09 05:12:39,982 | INFO     | -- intersect: -8744542481.713984
[2025-03-09 00:13:00] 2025-03-09 05:12:39,982 | INFO     | intersect: -8744542481.713984
[2025-03-09 00:13:00] 2025-03-09 05:12:39,983 | INFO     | chi2: 0.08814508971397478
[2025-03-09 00:13:00] 2025-03-09 05:12:39,983 | INFO     | current chi2=0.08814508971397478 (change=90.47032529460333 %)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,983 | INFO     | model: linear, x: [1741488750.0, 1741488811.0, 1741488872.0, 1741488934.0, 1741488994.0, 1741489055.0, 1741489116.0, 1741489177.0, 1741489238.0, 1741489300.0, 1741
[2025-03-09 00:13:00] 2025-03-09 05:12:39,983 | INFO     | sum of square deviations: 814842014.405798
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | sum of deviations: 1030960144.4202901
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | mean x: 1741492928.6231885
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | mean y: 2277851.1811594204
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | -- intersect: -2201106080.254349
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | intersect: -2201106080.254349
[2025-03-09 00:13:00] 2025-03-09 05:12:39,984 | INFO     | chi2: 0.033358523895852685
[2025-03-09 00:13:00] 2025-03-09 05:12:39,985 | INFO     | current chi2=0.033358523895852685 (change=62.154983330212744 %)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,985 | INFO     | model: linear, x: [1741489055.0, 1741489116.0, 1741489177.0, 1741489238.0, 1741489300.0, 1741489360.0, 1741489422.0, 1741489482.0, 1741489543.0, 1741489604.0, 1741
[2025-03-09 00:13:00] 2025-03-09 05:12:39,985 | INFO     | sum of square deviations: 729438872.0751848
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | sum of deviations: 1225024507.3082702
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | mean x: 1741493081.1203008
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | mean y: 2277492.2932330826
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | -- intersect: -2922397604.3477187
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | intersect: -2922397604.3477187
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | chi2: 0.03233496542320022
[2025-03-09 00:13:00] 2025-03-09 05:12:39,986 | INFO     | current chi2=0.03233496542320022 (change=3.0683566090876133 %)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | left removable region: 50
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | model: linear, x: [1741490580.0, 1741490641.0, 1741490702.0, 1741490763.0, 1741490824.0, 1741490885.0, 1741490946.0, 1741491007.0, 1741491068.0, 1741491130.0, 1741
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | sum of square deviations: 329018306.3137257
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | sum of deviations: 1011286842.9019607
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | mean x: 1741493660.6078432
[2025-03-09 00:13:00] 2025-03-09 05:12:39,987 | INFO     | mean y: 2279022.3725490198
[2025-03-09 00:13:00] 2025-03-09 05:12:39,988 | INFO     | -- intersect: -5350461515.68916
[2025-03-09 00:13:00] 2025-03-09 05:12:39,988 | INFO     | intersect: -5350461515.68916
[2025-03-09 00:13:00] 2025-03-09 05:12:39,988 | INFO     | chi2: 0.021143176633056995
[2025-03-09 00:13:00] 2025-03-09 05:12:39,988 | INFO     | -- intersect: -5350461515.68916
[2025-03-09 00:13:00] 2025-03-09 05:12:39,988 | INFO     | current memory leak: 3.07 B/s (using 102 data points, chi2=0.02)
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | ..............................
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . Timing measurements:
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . get job = 0 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . initial setup = 2 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . payload setup = 4 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . stage-in = 0 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . payload execution = 9622 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . stage-out = 0 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | . log creation = 0 s
[2025-03-09 00:13:00] 2025-03-09 05:12:39,989 | INFO     | ..............................
[2025-03-09 00:13:00] 2025-03-09 05:12:40,085 | INFO     | 
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | job summary report
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | --------------------------------------------------
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | PanDA job id: 6548566161
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | task id: 43558013
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | errors: (none)
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | pilot state: finished 
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | transexitcode: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | exeerrorcode: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | exeerrordiag: 
[2025-03-09 00:13:00] 2025-03-09 05:12:40,086 | INFO     | exitcode: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | exitmsg: OK
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | cpuconsumptiontime: 45696 s
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | nevents: 400
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | neventsw: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | pid: 1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | pgrp: 1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | corecount: 8
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | event service: False
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | sizes: {0: 2378267, 1: 2378381, 4: 2378615, 11: 2378643, 9630: 2407232, 9631: 2407231, 9632: 2416356, 9633: 2416412, 9638: 2416582}
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | --------------------------------------------------
[2025-03-09 00:13:00] 2025-03-09 05:12:40,087 | INFO     | 
[2025-03-09 00:13:00] 2025-03-09 05:12:40,088 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-03-09 00:13:00] 2025-03-09 05:12:40,106 | INFO     | queue jobs had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,106 | INFO     | queue payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,106 | INFO     | queue data_in had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,106 | INFO     | queue data_out had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue completed_jobids has 1 job(s)
[2025-03-09 00:13:00] 2025-03-09 05:12:40,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,108 | INFO     | queue messages had 0 job(s) [purged]
[2025-03-09 00:13:00] 2025-03-09 05:12:40,108 | INFO     | job 6548566161 has completed (purged errors)
[2025-03-09 00:13:00] 2025-03-09 05:12:40,108 | INFO     | overall cleanup function is called
[2025-03-09 00:13:00] 2025-03-09 05:12:40,174 | WARNING  | process 1424140 can no longer be monitored (due to stat problems) - aborting
[2025-03-09 00:13:00] 2025-03-09 05:12:40,448 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-03-09 00:13:00] 2025-03-09 05:12:40,751 | INFO     | number of running child processes to parent process 1424140: 1
[2025-03-09 00:13:00] 2025-03-09 05:12:40,752 | INFO     | maximum number of monitored processes: 6
[2025-03-09 00:13:00] 2025-03-09 05:12:40,752 | INFO     | aborting job monitoring since job object (job id=6548566161) has expired
[2025-03-09 00:13:00] 2025-03-09 05:12:41,116 | INFO     | --- collectZombieJob: --- 10, [1424140]
[2025-03-09 00:13:00] 2025-03-09 05:12:41,116 | INFO     | zombie collector waiting for pid 1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:41,116 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-03-09 00:13:00] 2025-03-09 05:12:41,117 | INFO     | collected zombie processes
[2025-03-09 00:13:00] 2025-03-09 05:12:41,117 | INFO     | will attempt to kill all subprocesses of pid=1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:41,413 | INFO     | process IDs to be killed: [1424140] (in reverse order)
[2025-03-09 00:13:00] 2025-03-09 05:12:41,572 | WARNING  | found no corresponding commands to process id(s)
[2025-03-09 00:13:00] 2025-03-09 05:12:41,572 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-03-09 00:13:00] 2025-03-09 05:12:41,594 | INFO     | did not find any defunct processes belonging to 1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:41,615 | INFO     | did not find any defunct processes belonging to 1424140
[2025-03-09 00:13:00] 2025-03-09 05:12:41,616 | INFO     | ready for new job
[2025-03-09 00:13:00] 2025-03-09 05:12:41,616 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-03-09 00:13:00] 2025-03-09 05:12:41,618 | INFO     | **************************************
[2025-03-09 00:13:00] 2025-03-09 05:12:41,618 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-03-09 00:13:00] 2025-03-09 05:12:41,618 | INFO     | **************************************
[2025-03-09 00:13:00] 2025-03-09 05:12:41,618 | INFO     | 
[2025-03-09 00:13:00] 2025-03-09 05:12:41,638 | INFO     | architecture information:
[2025-03-09 00:13:00] 2025-03-09 05:12:41,638 | INFO     | executing command: cat /etc/os-release
[2025-03-09 00:13:00] 2025-03-09 05:12:41,657 | INFO     | cat /etc/os-release:
[2025-03-09 00:13:00] NAME="CentOS Linux"
[2025-03-09 00:13:00] VERSION="7 (Core)"
[2025-03-09 00:13:00] ID="centos"
[2025-03-09 00:13:00] ID_LIKE="rhel fedora"
[2025-03-09 00:13:00] VERSION_ID="7"
[2025-03-09 00:13:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-03-09 00:13:00] ANSI_COLOR="0;31"
[2025-03-09 00:13:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-03-09 00:13:00] HOME_URL="https://www.centos.org/"
[2025-03-09 00:13:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-03-09 00:13:00] 
[2025-03-09 00:13:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-03-09 00:13:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-03-09 00:13:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-03-09 00:13:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-03-09 00:13:00] 
[2025-03-09 00:13:00] 2025-03-09 05:12:41,657 | INFO     | **************************************
[2025-03-09 00:13:00] 2025-03-09 05:12:42,159 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-03-09 00:13:00] 2025-03-09 05:12:42,179 | INFO     | sufficient remaining disk space (95038734336 B)
[2025-03-09 00:13:00] 2025-03-09 05:12:42,179 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-03-09 00:13:00] 2025-03-09 05:12:42,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-03-09 00:13:00] 2025-03-09 05:12:42,180 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-03-09 00:13:00] 2025-03-09 05:12:42,180 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-03-09 00:13:00] 2025-03-09 05:12:42,180 | INFO     | aborting loop
[2025-03-09 00:13:00] 2025-03-09 05:12:42,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-03-09 00:13:00] 2025-03-09 05:12:42,328 | INFO     | all job control threads have been joined
[2025-03-09 00:13:00] 2025-03-09 05:12:42,904 | INFO     | all payload control threads have been joined
[2025-03-09 00:13:00] 2025-03-09 05:12:43,184 | INFO     | [job] retrieve thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,185 | INFO     | [job] job monitor thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,205 | INFO     | all data control threads have been joined
[2025-03-09 00:13:00] 2025-03-09 05:12:43,246 | INFO     | [job] validate thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,270 | INFO     | [data] copytool_in thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,334 | INFO     | [job] control thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,389 | INFO     | [job] create_data_payload thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,483 | INFO     | [payload] execute_payloads thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,639 | INFO     | PID=1406851 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-03-09 00:13:00] 2025-03-09 05:12:43,640 | INFO     | .. there are 44 such processes running
[2025-03-09 00:13:00] 2025-03-09 05:12:43,640 | INFO     | found 0 job(s) in 20 queues
[2025-03-09 00:13:00] 2025-03-09 05:12:43,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-03-09 00:13:00] 2025-03-09 05:12:43,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-03-09 00:13:00] 2025-03-09 05:12:43,751 | INFO     | [payload] validate_pre thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:43,909 | INFO     | [payload] control thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:44,210 | INFO     | [data] control thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:44,315 | INFO     | [data] copytool_out thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:44,605 | INFO     | [payload] failed_post thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:44,782 | INFO     | [payload] validate_post thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:45,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-03-09 00:13:00] 2025-03-09 05:12:46,100 | INFO     | [job] queue monitor thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:46,185 | INFO     | [data] queue_monitor thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:52,268 | INFO     | job.realtimelogging is not enabled
[2025-03-09 00:13:00] 2025-03-09 05:12:53,274 | INFO     | [payload] run_realtimelog thread has finished
[2025-03-09 00:13:00] 2025-03-09 05:12:54,612 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454222296896)>', '<ExcThread(monitor, started 140453701719808)>']
[2025-03-09 00:13:00] 2025-03-09 05:12:54,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-03-09 00:13:00] 2025-03-09 05:12:54,695 | INFO     | [monitor] control thread has ended
[2025-03-09 00:13:00] 2025-03-09 05:12:59,637 | INFO     | all workflow threads have been joined
[2025-03-09 00:13:00] 2025-03-09 05:12:59,638 | INFO     | end of generic workflow (traces error code: 0)
[2025-03-09 00:13:00] 2025-03-09 05:12:59,638 | INFO     | traces error code: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:59,639 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-03-09 00:13:00] 2025-03-09 05:12:59,837 [wrapper] ==== pilot stdout END ====
[2025-03-09 00:13:00] 2025-03-09 05:12:59,838 [wrapper] ==== wrapper stdout RESUME ====
[2025-03-09 00:13:00] 2025-03-09 05:12:59,840 [wrapper] pilotpid: 1406851
[2025-03-09 00:13:00] 2025-03-09 05:12:59,842 [wrapper] Pilot exit status: 0
[2025-03-09 00:13:00] 2025-03-09 05:12:59,849 [wrapper] pandaids: 6548566161
[2025-03-09 00:13:00] 2025-03-09 05:12:59,949 [wrapper] cleanup supervisor_pilot 2420466 1406852
[2025-03-09 00:13:00] 2025-03-09 05:12:59,951 [wrapper] Test setup, not cleaning
[2025-03-09 00:13:00] 2025-03-09 05:12:59,955 [wrapper] apfmon messages muted
[2025-03-09 00:13:00] 2025-03-09 05:12:59,956 [wrapper] ==== wrapper stdout END ====
[2025-03-09 00:13:00] 2025-03-09 05:12:59,958 [wrapper] ==== wrapper stderr END ====
[2025-03-09 00:13:00]  *** Error codes and diagnostics ***
[2025-03-09 00:13:00]     "exeErrorCode": 0,
[2025-03-09 00:13:00]     "exeErrorDiag": "",
[2025-03-09 00:13:00]     "pilotErrorCode": 0,
[2025-03-09 00:13:00]     "pilotErrorDiag": "",
[2025-03-09 00:13:00]  *** Listing of results directory ***
[2025-03-09 00:13:00] total 426656
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas    491065 Mar  8 21:25 pilot3.tar.gz
[2025-03-09 00:13:00] -rwx------. 1 boincer umatlas     35865 Mar  8 21:29 runpilot2-wrapper.sh
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas      5118 Mar  8 21:29 queuedata.json
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas       100 Mar  8 21:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-03-09 00:13:00] -rwxr-xr-x. 1 boincer umatlas      7986 Mar  8 21:31 run_atlas
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas       105 Mar  8 21:31 job.xml
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas 269036848 Mar  8 21:31 EVNT.43558011._000006.pool.root.1
[2025-03-09 00:13:00] drwxrwx--x. 2 boincer umatlas      4096 Mar  8 21:31 shared
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas    503550 Mar  8 21:31 input.tar.gz
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 21:31 start_atlas.sh
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas         0 Mar  8 21:31 boinc_lockfile
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas      2555 Mar  8 21:31 pandaJob.out
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas       467 Mar  8 21:31 setup.sh.local
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas    992045 Mar  8 21:31 agis_schedconf.cvmfs.json
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas   1579410 Mar  8 21:31 agis_ddmendpoints.agis.ALL.json
[2025-03-09 00:13:00] drwx------. 4 boincer umatlas      4096 Mar  8 21:31 pilot3
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas      6856 Mar  9 00:09 init_data.xml
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas        95 Mar  9 00:11 pilot_heartbeat.json
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas 161353096 Mar  9 00:11 HITS.43558013._000138.pool.root.1
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas       530 Mar  9 00:12 boinc_task_state.xml
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas      1054 Mar  9 00:12 memory_monitor_summary.json
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas    403076 Mar  9 00:12 log.43558013._000138.job.log.tgz.1
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas      7748 Mar  9 00:12 heartbeat.json
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas        27 Mar  9 00:12 wrapper_checkpoint.txt
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas      8192 Mar  9 00:12 boinc_mmap_file
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas      4683 Mar  9 00:12 pilotlog.txt
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas    946690 Mar  9 00:12 log.43558013._000138.job.log.1
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas       357 Mar  9 00:12 output.list
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas       620 Mar  9 00:12 runtime_log
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas   1372160 Mar  9 00:12 result.tar.gz
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas       659 Mar  9 00:13 Z4JMDmtaLB7nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmXU0KDmdJgKvm.diag
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas     11423 Mar  9 00:13 runtime_log.err
[2025-03-09 00:13:00] -rw-r--r--. 1 boincer umatlas     21784 Mar  9 00:13 stderr.txt
[2025-03-09 00:13:00] HITS file was successfully produced:
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas 161353096 Mar  9 00:11 shared/HITS.pool.root.1
[2025-03-09 00:13:00]  *** Contents of shared directory: ***
[2025-03-09 00:13:00] total 422160
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas 269036848 Mar  8 21:31 ATLAS.root_0
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas    503550 Mar  8 21:31 input.tar.gz
[2025-03-09 00:13:00] -rw-r--r--. 2 boincer umatlas     17569 Mar  8 21:31 start_atlas.sh
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas 161353096 Mar  9 00:11 HITS.pool.root.1
[2025-03-09 00:13:00] -rw-------. 1 boincer umatlas   1372160 Mar  9 00:12 result.tar.gz
00:13:01 (1395490): run_atlas exited; CPU time 45665.543020
00:13:01 (1395490): called boinc_finish(0)

</stderr_txt>
]]>

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