Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:46:42 (936561): wrapper (7.7.26015): starting
09:46:42 (936561): wrapper: running run_atlas (--nthreads 4)
[2025-02-28 09:46:42] Arguments: --nthreads 4
[2025-02-28 09:46:42] Threads: 4
[2025-02-28 09:46:42] Checking for CVMFS
[2025-02-28 09:46:42] No cvmfs_config command found, will try listing directly
[2025-02-28 09:46:42] CVMFS is ok
[2025-02-28 09:46:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-28 09:46:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-28 09:46:42] Further information can be found at the LHC@home message board.
[2025-02-28 09:46:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-28 09:46:42] Checking for apptainer binary...
[2025-02-28 09:46:42] which: no apptainer in ((null))
[2025-02-28 09:46:42] apptainer is not installed, using version from CVMFS
[2025-02-28 09:46:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-28 09:46:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2025-02-28 09:46:42] apptainer works
[2025-02-28 09:46:42] Set ATHENA_PROC_NUMBER=4
[2025-02-28 09:46:42] Set ATHENA_CORE_NUMBER=4
[2025-02-28 09:46:42] Starting ATLAS job with PandaID=6533226680
[2025-02-28 09:46:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-28 12:55:57]  *** The last 200 lines of the pilot log: ***
[2025-02-28 12:55:57] 2025-02-28 11:55:38,837 | INFO     | chi2: 3.5833321475777176
[2025-02-28 12:55:57] 2025-02-28 11:55:38,837 | INFO     | current chi2=3.5833321475777176 (change=17.158222573417074 %)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,837 | INFO     | right removable region: 180
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | model: linear, x: [1740732734.0, 1740732795.0, 1740732856.0, 1740732917.0, 1740732978.0, 1740733039.0, 1740733100.0, 1740733161.0, 1740733222.0, 1740733283.0, 1740
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | sum of square deviations: 1838657730.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | sum of deviations: 17084494723.999994
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | mean x: 1740738224.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | mean y: 2370997.1657458562
[2025-02-28 12:55:57] 2025-02-28 11:55:38,838 | INFO     | -- intersect: -16172272341.044416
[2025-02-28 12:55:57] 2025-02-28 11:55:38,839 | INFO     | intersect: -16172272341.044416
[2025-02-28 12:55:57] 2025-02-28 11:55:38,839 | INFO     | chi2: 2.076742333100654
[2025-02-28 12:55:57] 2025-02-28 11:55:38,839 | INFO     | current chi2=2.076742333100654 (change=51.988534959734544 %)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,839 | INFO     | model: linear, x: [1740733039.0, 1740733100.0, 1740733161.0, 1740733222.0, 1740733283.0, 1740733344.0, 1740733405.0, 1740733466.0, 1740733527.0, 1740733588.0, 1740
[2025-02-28 12:55:57] 2025-02-28 11:55:38,839 | INFO     | sum of square deviations: 1690450300.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | sum of deviations: -14618034235.5
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | mean x: 1740738376.5
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | mean y: 2403621.9488636362
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | -- intersect: 15055299990.87831
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | intersect: 15055299990.87831
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | chi2: 0.8606823497285891
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | current chi2=0.8606823497285891 (change=58.55613207231356 %)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,840 | INFO     | model: linear, x: [1740733344.0, 1740733405.0, 1740733466.0, 1740733527.0, 1740733588.0, 1740733649.0, 1740733710.0, 1740733771.0, 1740733832.0, 1740733893.0, 1740
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | sum of square deviations: 1550429070.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | sum of deviations: -16429843639.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | mean x: 1740738529.0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | mean y: 2405516.356725146
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | -- intersect: 18448951960.337467
[2025-02-28 12:55:57] 2025-02-28 11:55:38,841 | INFO     | intersect: 18448951960.337467
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | chi2: 0.8264759970210336
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | current chi2=0.8264759970210336 (change=3.974329521029719 %)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | left removable region: 30
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | model: linear, x: [1740734259.0, 1740734320.0, 1740734381.0, 1740734442.0, 1740734503.0, 1740734564.0, 1740734625.0, 1740734686.0, 1740734747.0, 1740734808.0, 1740
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | sum of square deviations: 1046484737.5
[2025-02-28 12:55:57] 2025-02-28 11:55:38,842 | INFO     | sum of deviations: 3060460859.5
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | mean x: 1740738803.5
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | mean y: 2407650.8866666667
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | -- intersect: -5088410001.60166
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | intersect: -5088410001.60166
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | chi2: 0.002241628332683401
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | -- intersect: -5088410001.60166
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | current memory leak: 2.92 B/s (using 150 data points, chi2=0.00)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,843 | INFO     | ..............................
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . Timing measurements:
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . get job = 0 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . initial setup = 1 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . payload setup = 3 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . stage-in = 0 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . payload execution = 11302 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . stage-out = 0 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | . log creation = 0 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,844 | INFO     | ..............................
[2025-02-28 12:55:57] 2025-02-28 11:55:38,898 | WARNING  | process 947007 can no longer be monitored (due to stat problems) - aborting
[2025-02-28 12:55:57] 2025-02-28 11:55:38,902 | INFO     | 
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | job summary report
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | --------------------------------------------------
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | PanDA job id: 6533226680
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | task id: 43425073
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | errors: (none)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | pilot state: finished 
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | transexitcode: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | exeerrorcode: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | exeerrordiag: 
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | exitcode: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | exitmsg: OK
[2025-02-28 12:55:57] 2025-02-28 11:55:38,903 | INFO     | cpuconsumptiontime: 42049 s
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6533226680/memory_monitor_summary.json (trf name=prmon)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | nevents: 400
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | neventsw: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | pid: 947007
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | pgrp: 947007
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | corecount: 4
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | event service: False
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | sizes: {0: 2363730, 1: 2363929, 3: 2364135, 11: 2364163, 11309: 2393350, 11310: 2402497, 11316: 2402611}
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | --------------------------------------------------
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | 
[2025-02-28 12:55:57] 2025-02-28 11:55:38,904 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,905 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6533226680/memory_monitor_summary.json (trf name=prmon)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,909 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2757201 B
[2025-02-28 12:55:57] 2025-02-28 11:55:38,910 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15548 B
[2025-02-28 12:55:57] 2025-02-28 11:55:38,910 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-28 12:55:57] 2025-02-28 11:55:38,921 | INFO     | job 6533226680 has completed (purged errors)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,921 | INFO     | overall cleanup function is called
[2025-02-28 12:55:57] 2025-02-28 11:55:38,921 | INFO     | sufficient remaining disk space (1686953263104 B)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,921 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,922 | INFO     | size of work directory /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6533226680: 3050728 B (within 2537553920 B limit)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,922 | INFO     | pfn file=/scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6533226680/HITS.43425073._000222.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,923 | INFO     | total size of present files: 0 B (workdir size: 3050728 B)
[2025-02-28 12:55:57] 2025-02-28 11:55:38,923 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6533226680/HITS.43425073._000222.pool.root.1 since it does not exist
[2025-02-28 12:55:57] 2025-02-28 11:55:38,971 | INFO     | number of running child processes to parent process 947007: 1
[2025-02-28 12:55:57] 2025-02-28 11:55:38,971 | INFO     | maximum number of monitored processes: 6
[2025-02-28 12:55:57] 2025-02-28 11:55:38,971 | INFO     | aborting job monitoring since job object (job id=6533226680) has expired
[2025-02-28 12:55:57] 2025-02-28 11:55:39,697 | INFO     | PID=940197 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-02-28 12:55:57] 2025-02-28 11:55:39,697 | INFO     | .. there are 2 such processes running
[2025-02-28 12:55:57] 2025-02-28 11:55:39,931 | INFO     | --- collectZombieJob: --- 10, [947007]
[2025-02-28 12:55:57] 2025-02-28 11:55:39,931 | INFO     | zombie collector waiting for pid 947007
[2025-02-28 12:55:57] 2025-02-28 11:55:39,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-28 12:55:57] 2025-02-28 11:55:39,932 | INFO     | collected zombie processes
[2025-02-28 12:55:57] 2025-02-28 11:55:39,932 | INFO     | will attempt to kill all subprocesses of pid=947007
[2025-02-28 12:55:57] 2025-02-28 11:55:39,981 | INFO     | process IDs to be killed: [947007] (in reverse order)
[2025-02-28 12:55:57] 2025-02-28 11:55:40,018 | WARNING  | found no corresponding commands to process id(s)
[2025-02-28 12:55:57] 2025-02-28 11:55:40,019 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-28 12:55:57] 2025-02-28 11:55:40,021 | INFO     | did not find any defunct processes belonging to 947007
[2025-02-28 12:55:57] 2025-02-28 11:55:40,024 | INFO     | did not find any defunct processes belonging to 947007
[2025-02-28 12:55:57] 2025-02-28 11:55:40,024 | INFO     | ready for new job
[2025-02-28 12:55:57] 2025-02-28 11:55:40,024 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-28 12:55:57] 2025-02-28 11:55:40,025 | INFO     | **************************************
[2025-02-28 12:55:57] 2025-02-28 11:55:40,026 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-28 12:55:57] 2025-02-28 11:55:40,026 | INFO     | **************************************
[2025-02-28 12:55:57] 2025-02-28 11:55:40,026 | INFO     | 
[2025-02-28 12:55:57] 2025-02-28 11:55:40,027 | INFO     | architecture information:
[2025-02-28 12:55:57] 2025-02-28 11:55:40,027 | INFO     | executing command: cat /etc/os-release
[2025-02-28 12:55:57] 2025-02-28 11:55:40,034 | INFO     | cat /etc/os-release:
[2025-02-28 12:55:57] NAME="CentOS Linux"
[2025-02-28 12:55:57] VERSION="7 (Core)"
[2025-02-28 12:55:57] ID="centos"
[2025-02-28 12:55:57] ID_LIKE="rhel fedora"
[2025-02-28 12:55:57] VERSION_ID="7"
[2025-02-28 12:55:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-28 12:55:57] ANSI_COLOR="0;31"
[2025-02-28 12:55:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-28 12:55:57] HOME_URL="https://www.centos.org/"
[2025-02-28 12:55:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-28 12:55:57] 
[2025-02-28 12:55:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-28 12:55:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-28 12:55:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-28 12:55:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-28 12:55:57] 
[2025-02-28 12:55:57] 2025-02-28 11:55:40,035 | INFO     | **************************************
[2025-02-28 12:55:57] 2025-02-28 11:55:40,538 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-02-28 12:55:57] 2025-02-28 11:55:40,547 | INFO     | sufficient remaining disk space (1686958505984 B)
[2025-02-28 12:55:57] 2025-02-28 11:55:40,547 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-28 12:55:57] 2025-02-28 11:55:40,547 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-28 12:55:57] 2025-02-28 11:55:40,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | INFO     | aborting loop
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | INFO     | found 0 job(s) in 20 queues
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-28 12:55:57] 2025-02-28 11:55:40,548 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-28 12:55:57] 2025-02-28 11:55:40,770 | INFO     | all data control threads have been joined
[2025-02-28 12:55:57] 2025-02-28 11:55:40,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-28 12:55:57] 2025-02-28 11:55:41,553 | INFO     | [job] retrieve thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,553 | INFO     | [job] queue monitor thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,553 | INFO     | [job] job monitor thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,681 | INFO     | [payload] execute_payloads thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,775 | INFO     | [data] control thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,901 | INFO     | [data] copytool_in thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:41,969 | INFO     | all payload control threads have been joined
[2025-02-28 12:55:57] 2025-02-28 11:55:41,995 | INFO     | [job] validate thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,131 | INFO     | all job control threads have been joined
[2025-02-28 12:55:57] 2025-02-28 11:55:42,215 | INFO     | [job] create_data_payload thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,223 | INFO     | [payload] validate_pre thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,334 | INFO     | [payload] validate_post thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,852 | INFO     | [payload] failed_post thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,968 | INFO     | [data] copytool_out thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:42,975 | INFO     | [payload] control thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:43,136 | INFO     | [job] control thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:43,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-28 12:55:57] 2025-02-28 11:55:47,517 | INFO     | [data] queue_monitor thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:51,462 | INFO     | job.realtimelogging is not enabled
[2025-02-28 12:55:57] 2025-02-28 11:55:52,467 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-28 12:55:57] 2025-02-28 11:55:52,683 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22674678679360)>', '<ExcThread(monitor, started 22674443040512)>']
[2025-02-28 12:55:57] 2025-02-28 11:55:53,614 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-28 12:55:57] 2025-02-28 11:55:53,615 | INFO     | [monitor] control thread has ended
[2025-02-28 12:55:57] 2025-02-28 11:55:57,708 | INFO     | all workflow threads have been joined
[2025-02-28 12:55:57] 2025-02-28 11:55:57,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-28 12:55:57] 2025-02-28 11:55:57,708 | INFO     | traces error code: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:57,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-28 12:55:57] 2025-02-28 11:55:57,782 [wrapper] ==== pilot stdout END ====
[2025-02-28 12:55:57] 2025-02-28 11:55:57,784 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-28 12:55:57] 2025-02-28 11:55:57,786 [wrapper] pilotpid: 940197
[2025-02-28 12:55:57] 2025-02-28 11:55:57,787 [wrapper] Pilot exit status: 0
[2025-02-28 12:55:57] 2025-02-28 11:55:57,794 [wrapper] pandaids: 6533226680
[2025-02-28 12:55:57] 2025-02-28 11:55:57,817 [wrapper] cleanup supervisor_pilot 1077946 940198
[2025-02-28 12:55:57] 2025-02-28 11:55:57,819 [wrapper] Test setup, not cleaning
[2025-02-28 12:55:57] 2025-02-28 11:55:57,823 [wrapper] apfmon messages muted
[2025-02-28 12:55:57] 2025-02-28 11:55:57,825 [wrapper] ==== wrapper stdout END ====
[2025-02-28 12:55:57] 2025-02-28 11:55:57,827 [wrapper] ==== wrapper stderr END ====
[2025-02-28 12:55:57]  *** Error codes and diagnostics ***
[2025-02-28 12:55:57]     "exeErrorCode": 0,
[2025-02-28 12:55:57]     "exeErrorDiag": "",
[2025-02-28 12:55:57]     "pilotErrorCode": 0,
[2025-02-28 12:55:57]     "pilotErrorDiag": "",
[2025-02-28 12:55:57]  *** Listing of results directory ***
[2025-02-28 12:55:57] total 604096
[2025-02-28 12:55:57] -rwx------ 1 boinc boinc     35865 Feb 27 10:45 runpilot2-wrapper.sh
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc      5118 Feb 27 10:45 queuedata.json
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc    491065 Feb 27 10:45 pilot3.tar.gz
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc       100 Feb 28 09:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-28 12:55:57] -rwxr-xr-x 1 boinc boinc      7986 Feb 28 09:46 run_atlas
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc       105 Feb 28 09:46 job.xml
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc      6422 Feb 28 09:46 init_data.xml
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc 325487883 Feb 28 09:46 EVNT.43425070._000009.pool.root.1
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc     17569 Feb 28 09:46 start_atlas.sh
[2025-02-28 12:55:57] drwxrwx--x 2 boinc boinc      4096 Feb 28 09:46 shared
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc    503551 Feb 28 09:46 input.tar.gz
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc         0 Feb 28 09:46 boinc_lockfile
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc      2595 Feb 28 09:46 pandaJob.out
[2025-02-28 12:55:57] -rw------- 1 boinc boinc       424 Feb 28 09:46 setup.sh.local
[2025-02-28 12:55:57] -rw------- 1 boinc boinc    990953 Feb 28 09:46 agis_schedconf.cvmfs.json
[2025-02-28 12:55:57] drwx------ 4 boinc boinc      4096 Feb 28 09:46 pilot3
[2025-02-28 12:55:57] -rw------- 1 boinc boinc 286283673 Feb 28 12:54 HITS.43425073._000222.pool.root.1
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc       531 Feb 28 12:55 boinc_task_state.xml
[2025-02-28 12:55:57] -rw------- 1 boinc boinc      1031 Feb 28 12:55 memory_monitor_summary.json
[2025-02-28 12:55:57] -rw------- 1 boinc boinc   1569202 Feb 28 12:55 agis_ddmendpoints.agis.ALL.json
[2025-02-28 12:55:57] -rw------- 1 boinc boinc    327413 Feb 28 12:55 log.43425073._000222.job.log.tgz.1
[2025-02-28 12:55:57] -rw------- 1 boinc boinc        95 Feb 28 12:55 pilot_heartbeat.json
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc      8192 Feb 28 12:55 boinc_mmap_file
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc        28 Feb 28 12:55 wrapper_checkpoint.txt
[2025-02-28 12:55:57] -rw------- 1 boinc boinc      7736 Feb 28 12:55 heartbeat.json
[2025-02-28 12:55:57] -rw------- 1 boinc boinc      4421 Feb 28 12:55 pilotlog.txt
[2025-02-28 12:55:57] -rw------- 1 boinc boinc   1186310 Feb 28 12:55 log.43425073._000222.job.log.1
[2025-02-28 12:55:57] -rw------- 1 boinc boinc       357 Feb 28 12:55 output.list
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc       620 Feb 28 12:55 runtime_log
[2025-02-28 12:55:57] -rw------- 1 boinc boinc   1536000 Feb 28 12:55 result.tar.gz
[2025-02-28 12:55:57] -rw------- 1 boinc boinc       663 Feb 28 12:55 ylPMDmYdp76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmAixKDmAzxr2n.diag
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc     11424 Feb 28 12:55 runtime_log.err
[2025-02-28 12:55:57] -rw-r--r-- 1 boinc boinc     22029 Feb 28 12:55 stderr.txt
[2025-02-28 12:55:57] HITS file was successfully produced:
[2025-02-28 12:55:57] -rw------- 1 boinc boinc 286283673 Feb 28 12:54 shared/HITS.pool.root.1
[2025-02-28 12:55:57]  *** Contents of shared directory: ***
[2025-02-28 12:55:57] total 599456
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc 325487883 Feb 28 09:46 ATLAS.root_0
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc     17569 Feb 28 09:46 start_atlas.sh
[2025-02-28 12:55:57] -rw-r--r-- 2 boinc boinc    503551 Feb 28 09:46 input.tar.gz
[2025-02-28 12:55:57] -rw------- 1 boinc boinc 286283673 Feb 28 12:54 HITS.pool.root.1
[2025-02-28 12:55:57] -rw------- 1 boinc boinc   1536000 Feb 28 12:55 result.tar.gz
12:55:59 (936561): run_atlas exited; CPU time 42070.924382
12:55:59 (936561): called boinc_finish(0)

</stderr_txt>
]]>

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