Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
11:11:24 (2620774): wrapper (7.7.26015): starting
11:11:24 (2620774): wrapper: running run_atlas (--nthreads 8)
[2025-02-26 11:11:24] Arguments: --nthreads 8
[2025-02-26 11:11:24] Threads: 8
[2025-02-26 11:11:24] Checking for CVMFS
[2025-02-26 11:11:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-26 11:11:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-26 11:11:26] Running cvmfs_config stat atlas.cern.ch
[2025-02-26 11:11:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-26 11:11:27] 2.11.5.0 3595733 965 155920 143077 1 170 33705093 37641216 24399 130560 0 2197926 98.355 12599659 13966 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-26 11:11:27] CVMFS is ok
[2025-02-26 11:11:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-26 11:11:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-26 11:11:27] Further information can be found at the LHC@home message board.
[2025-02-26 11:11:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 11:11:27] Checking for apptainer binary...
[2025-02-26 11:11:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-26 11:11:27] Running /usr/bin/apptainer --version
[2025-02-26 11:11:28] apptainer version 1.3.6-1.el9
[2025-02-26 11:11:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 11:11:28] c6-12-25-4.aglt2.org
[2025-02-26 11:11:28] apptainer works
[2025-02-26 11:11:28] Set ATHENA_PROC_NUMBER=8
[2025-02-26 11:11:28] Set ATHENA_CORE_NUMBER=8
[2025-02-26 11:11:28] Starting ATLAS job with PandaID=6532202389
[2025-02-26 11:11:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 12:12:26] run_atlas: line 178: 2621886 Bus error               (core dumped) $cmd > runtime_log 2> runtime_log.err
[2025-02-26 12:12:26] Job failed
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + export RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/3/
[2025-02-26 12:12:26] + RUNTIME_CONFIG_DIR=/tmp/boinchome/slots/3/
[2025-02-26 12:12:26] + mv ATLAS.root_0 EVNT.43092757._001912.pool.root.1
[2025-02-26 12:12:26] + tar --strip-components=5 -xvf input.tar.gz
[2025-02-26 12:12:26] + umask 077
[2025-02-26 12:12:26] ++ date +%s
[2025-02-26 12:12:26] + ACCOUNTING_STARTTIME=1740586289
[2025-02-26 12:12:26] + echo 'Detecting resource accounting method available for the job.'
[2025-02-26 12:12:26] Detecting resource accounting method available for the job.
[2025-02-26 12:12:26] + JOB_ACCOUNTING=
[2025-02-26 12:12:26] + command -v arc-job-cgroup
[2025-02-26 12:12:26] + '[' -z '' ']'
[2025-02-26 12:12:26] + GNU_TIME=/usr/bin/time
[2025-02-26 12:12:26] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-02-26 12:12:26] Looking for /usr/bin/time tool for accounting measurements
[2025-02-26 12:12:26] + '[' '!' -z /usr/bin/time ']'
[2025-02-26 12:12:26] + /usr/bin/time --version
[2025-02-26 12:12:26] + echo 'GNU time found and will be used for job accounting.'
[2025-02-26 12:12:26] GNU time found and will be used for job accounting.
[2025-02-26 12:12:26] + JOB_ACCOUNTING=gnutime
[2025-02-26 12:12:26] + '[' -z gnutime ']'
[2025-02-26 12:12:26] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-02-26 12:12:26] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-02-26 12:12:26] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-02-26/BOINC_MCORE/6532202389.out
[2025-02-26 12:12:26] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-02-26/BOINC_MCORE/6532202389.out
[2025-02-26 12:12:26] + export PILOT_NOKILL=YES
[2025-02-26 12:12:26] + PILOT_NOKILL=YES
[2025-02-26 12:12:26] + export GRID_GLOBAL_JOBID=R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn
[2025-02-26 12:12:26] + GRID_GLOBAL_JOBID=R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn
[2025-02-26 12:12:26] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn
[2025-02-26 12:12:26] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn
[2025-02-26 12:12:26] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-02-26 12:12:26] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-02-26 12:12:26] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-02-26 12:12:26] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + RUNTIME_JOB_DIR=/tmp/boinchome/slots/3
[2025-02-26 12:12:26] + RUNTIME_JOB_STDIN=/dev/null
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + RUNTIME_JOB_STDOUT=/tmp/boinchome/slots/3/log.43205094._040603.job.log.1
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + RUNTIME_JOB_STDERR=/tmp/boinchome/slots/3/log.43205094._040603.job.log.1
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/3.diag
[2025-02-26 12:12:26] + '[' '!' -z '' ']'
[2025-02-26 12:12:26] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-02-26 12:12:26] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-02-26 12:12:26] + RUNTIME_FRONTEND_SEES_NODE=
[2025-02-26 12:12:26] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-02-26 12:12:26] + '[' '!' -z '' ']'
[2025-02-26 12:12:26] + '[' -z yes ']'
[2025-02-26 12:12:26] ++ pwd
[2025-02-26 12:12:26] + RUNTIME_JOB_DIAG=/tmp/boinchome/slots/3/R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn.diag
[2025-02-26 12:12:26] + runtimeenvironments=
[2025-02-26 12:12:26] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-02-26 12:12:26] + RTE_function_0 1
[2025-02-26 12:12:26] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-02-26 12:12:26] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-02-26 12:12:26] + export BOINC_APP=ATLAS
[2025-02-26 12:12:26] + BOINC_APP=ATLAS
[2025-02-26 12:12:26] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-02-26 12:12:26] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-02-26 12:12:26] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-02-26 12:12:26] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-02-26 12:12:26] + '[' -z 1 ']'
[2025-02-26 12:12:26] + '[' 1 == 1 ']'
[2025-02-26 12:12:26] + shift
[2025-02-26 12:12:26] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2025-02-26 12:12:26] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2025-02-26 12:12:26] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2025-02-26 12:12:26] + export ATLAS_LOCAL_AREA=/tmp/boinchome/slots/3/
[2025-02-26 12:12:26] + ATLAS_LOCAL_AREA=/tmp/boinchome/slots/3/
[2025-02-26 12:12:26] + '[' -e /tmp/boinchome/slots/3/init_data.xml ']'
[2025-02-26 12:12:26] + grep '<use_http_proxy/>' /tmp/boinchome/slots/3/init_data.xml
[2025-02-26 12:12:26] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_name>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/3/init_data.xml
[2025-02-26 12:12:26] + PROXY_HOST=sl-um-es2.slateci.io
[2025-02-26 12:12:26] ++ sed -e '/<proxy_info>/,/<\/proxy_info>/ s/^.*<http_server_port>\([^<]*\).*/\1/p' -n /tmp/boinchome/slots/3/init_data.xml
[2025-02-26 12:12:26] + PROXY_PORT=6081
[2025-02-26 12:12:26] + '[' -n sl-um-es2.slateci.io ']'
[2025-02-26 12:12:26] + '[' -n 6081 ']'
[2025-02-26 12:12:26] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2025-02-26 12:12:26] + FRONTIER_PROXY_URLS='(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2025-02-26 12:12:26] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2025-02-26 12:12:26] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2025-02-26 12:12:26] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://sl-um-es2.slateci.io:6081)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2025-02-26 12:12:26] + '[' 0 -ne 0 ']'
[2025-02-26 12:12:26] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-02-26 12:12:26] + '[' -f /etc/os-release ']'
[2025-02-26 12:12:26] +++ cat /etc/os-release
[2025-02-26 12:12:26] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-02-26 12:12:26] +++ NAME='CentOS Linux'
[2025-02-26 12:12:26] +++ VERSION='7 (Core)'
[2025-02-26 12:12:26] +++ ID=centos
[2025-02-26 12:12:26] +++ ID_LIKE='rhel fedora'
[2025-02-26 12:12:26] +++ VERSION_ID=7
[2025-02-26 12:12:26] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-02-26 12:12:26] +++ ANSI_COLOR='0;31'
[2025-02-26 12:12:26] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-02-26 12:12:26] +++ HOME_URL=https://www.centos.org/
[2025-02-26 12:12:26] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-02-26 12:12:26] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-02-26 12:12:26] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-02-26 12:12:26] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-02-26 12:12:26] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-02-26 12:12:26] ++ echo 'CentOS Linux 7 (Core)'
[2025-02-26 12:12:26] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-02-26 12:12:26] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-02-26 12:12:26] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-02-26 12:12:26] + HOME=/tmp/boinchome/slots/3
[2025-02-26 12:12:26] + export HOME
[2025-02-26 12:12:26] + cd /tmp/boinchome/slots/3
[2025-02-26 12:12:26] + '[' '!' -z '' ']'
[2025-02-26 12:12:26] + '[' -z '' ']'
[2025-02-26 12:12:26] ++ /bin/hostname -f
[2025-02-26 12:12:26] + nodename=c6-12-25-4.aglt2.org
[2025-02-26 12:12:26] + echo nodename=c6-12-25-4.aglt2.org
[2025-02-26 12:12:26] + echo Processors=2
[2025-02-26 12:12:26] + echo Nodecount=1
[2025-02-26 12:12:26] + echo Benchmark=HEPSPEC:1.0
[2025-02-26 12:12:26] + executable=./runpilot2-wrapper.sh
[2025-02-26 12:12:26] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-02-26 12:12:26] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-02-26 12:12:26] ++ head -n 1
[2025-02-26 12:12:26] ++ tr -d '\0'
[2025-02-26 12:12:26] + line1='#!/bin/bash'
[2025-02-26 12:12:26] ++ sed -n 's/^#! *//p'
[2025-02-26 12:12:26] ++ echo '#!/bin/bash'
[2025-02-26 12:12:26] + shebang=/bin/bash
[2025-02-26 12:12:26] ++ echo /bin/bash
[2025-02-26 12:12:26] ++ awk '{print $1}'
[2025-02-26 12:12:26] + interpreter=/bin/bash
[2025-02-26 12:12:26] + '[' /bin/bash = /usr/bin/env ']'
[2025-02-26 12:12:26] + '[' x/bin/bash = x ']'
[2025-02-26 12:12:26] + type /bin/bash
[2025-02-26 12:12:26] + '[' xgnutime = xgnutime ']'
[2025-02-26 12:12:26] + /usr/bin/time -o /tmp/boinchome/slots/3/R9zMDmaAZ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDm4lgKDmEuRDVn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.9.4.15 -z -t --piloturl local --mute --container
[2025-02-26 12:12:26] ./pilotlog.txt
[2025-02-26 12:12:26] ./runtime_log.err
[2025-02-26 12:12:26] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-02-26 12:12:26] ./pilot3/pilot/util/loggingsupport.py
[2025-02-26 12:12:26] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-02-26 12:12:26] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-02-26 12:12:26] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-02-26 12:12:26] ./pilot3/pilot/util/realtimelogger.py
[2025-02-26 12:12:26] ./runtime_log
[2025-02-26 12:12:26] ./PanDA_Pilot-6532202389/PoolFileCatalog.xml
[2025-02-26 12:12:26] ./PanDA_Pilot-6532202389/pilotlog.txt
[2025-02-26 12:12:26] ./PanDA_Pilot-6532202389/prmon.log
[2025-02-26 12:12:26] ./PanDA_Pilot-6532202389/log.EVNTtoHITS
[2025-02-26 12:12:26] ./log.43205094._040603.job.log.1
12:22:26 (2620774): run_atlas exited; CPU time 5.810363
12:22:26 (2620774): app exit status: 0x1
12:22:26 (2620774): called boinc_finish(195)

</stderr_txt>
]]>

©2025 CERN