Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:37:21 (5145): wrapper (7.7.26015): starting
22:37:21 (5145): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 22:37:21] Arguments: --nthreads 12
[2025-02-25 22:37:21] Threads: 12
[2025-02-25 22:37:21] Checking for CVMFS
[2025-02-25 22:37:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 22:37:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 22:37:21] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 22:37:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 22:37:21] 2.11.2.0 24956 294727 152432 143061 3 55 18617827 20275201 1 130560 0 24920378 99.979 8072675 44468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 22:37:21] CVMFS is ok
[2025-02-25 22:37:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 22:37:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 22:37:21] Further information can be found at the LHC@home message board.
[2025-02-25 22:37:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 22:37:21] Checking for apptainer binary...
[2025-02-25 22:37:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 22:37:21] Running /usr/bin/apptainer --version
[2025-02-25 22:37:21] apptainer version 1.3.2-1.el7
[2025-02-25 22:37:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 22:37:23] c-205-8.aglt2.org
[2025-02-25 22:37:23] apptainer works
[2025-02-25 22:37:23] Set ATHENA_PROC_NUMBER=12
[2025-02-25 22:37:23] Set ATHENA_CORE_NUMBER=12
[2025-02-25 22:37:23] Starting ATLAS job with PandaID=6531065082
[2025-02-25 22:37:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 00:01:42]  *** The last 200 lines of the pilot log: ***
[2025-02-26 00:01:42]  mtime=0
[2025-02-26 00:01:42]  protocol_id=None
[2025-02-26 00:01:42]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-26 00:01:42]  replicas=None
[2025-02-26 00:01:42]  scope=mc23_13p6TeV
[2025-02-26 00:01:42]  status=None
[2025-02-26 00:01:42]  status_code=0
[2025-02-26 00:01:42]  storage_token=
[2025-02-26 00:01:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6531065082/log.43401155._002057.job.log.tgz.1
[2025-02-26 00:01:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/24/log.43401155._002057.job.log.tgz.1
[2025-02-26 00:01:42]  workdir=None
[2025-02-26 00:01:42] ]
[2025-02-26 00:01:42] 2025-02-26 05:01:17,784 | INFO     | transferring file log.43401155._002057.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6531065082/log.43401155._002057.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-26 00:01:42] 2025-02-26 05:01:17,784 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6531065082/log.43401155._002057.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401155._002057.job
[2025-02-26 00:01:42] 2025-02-26 05:01:17,806 | INFO     | adding to output.list: log.43401155._002057.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/01/24/log.43401155._002057.job.log.tg
[2025-02-26 00:01:42] 2025-02-26 05:01:17,807 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-26 00:01:42] 2025-02-26 05:01:17,807 | INFO     | summary of transferred files:
[2025-02-26 00:01:42] 2025-02-26 05:01:17,807 | INFO     |  -- lfn=log.43401155._002057.job.log.tgz.1, status_code=0, status=transferred
[2025-02-26 00:01:42] 2025-02-26 05:01:17,808 | INFO     | stage-out finished correctly
[2025-02-26 00:01:42] 2025-02-26 05:01:19,450 | WARNING  | process 15190 can no longer be monitored (due to stat problems) - aborting
[2025-02-26 00:01:42] 2025-02-26 05:01:19,450 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531065082/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 00:01:42] 2025-02-26 05:01:19,506 | INFO     | number of running child processes to parent process 15190: 1
[2025-02-26 00:01:42] 2025-02-26 05:01:19,507 | INFO     | maximum number of monitored processes: 6
[2025-02-26 00:01:42] 2025-02-26 05:01:21,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-26 00:01:42] 2025-02-26 05:01:22,010 | INFO     | monitor loop #370: job 0:6531065082 is in state 'finished'
[2025-02-26 00:01:42] 2025-02-26 05:01:22,010 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 00:01:42] 2025-02-26 05:01:23,013 | INFO     | job 6531065082 has state=finished
[2025-02-26 00:01:42] 2025-02-26 05:01:23,013 | INFO     | preparing for final server update for job 6531065082 in state='finished'
[2025-02-26 00:01:42] 2025-02-26 05:01:23,014 | INFO     | this job has now completed (state=finished)
[2025-02-26 00:01:42] 2025-02-26 05:01:23,014 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-26 00:01:42] 2025-02-26 05:01:23,014 | INFO     | log transfer has been attempted: DONE
[2025-02-26 00:01:42] 2025-02-26 05:01:23,014 | INFO     | job 6531065082 has finished - writing final server update
[2025-02-26 00:01:42] 2025-02-26 05:01:23,015 | INFO     | total number of processed events: 400 (read)
[2025-02-26 00:01:42] 2025-02-26 05:01:23,016 | INFO     | executing command: lscpu
[2025-02-26 00:01:42] 2025-02-26 05:01:23,042 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-26 00:01:42] 2025-02-26 05:01:23,056 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-26 00:01:42] 2025-02-26 05:01:24,513 | INFO     | monitor loop #371: job 0:6531065082 is in state 'finished'
[2025-02-26 00:01:42] 2025-02-26 05:01:24,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 00:01:42] 2025-02-26 05:01:27,016 | INFO     | monitor loop #372: job 0:6531065082 is in state 'finished'
[2025-02-26 00:01:42] 2025-02-26 05:01:27,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,807 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-26 00:01:42] 2025-02-26 05:01:28,808 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6531065082/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,808 | INFO     | extracted standard info from prmon json
[2025-02-26 00:01:42] 2025-02-26 05:01:28,809 | INFO     | extracted standard memory fields from prmon json
[2025-02-26 00:01:42] 2025-02-26 05:01:28,809 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-26 00:01:42] 2025-02-26 05:01:28,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-26 00:01:42] 2025-02-26 05:01:28,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-26 00:01:42] 2025-02-26 05:01:28,812 | INFO     | fitting pss+swap vs Time
[2025-02-26 00:01:42] 2025-02-26 05:01:28,812 | INFO     | model: linear, x: [1740541391.0, 1740541452.0, 1740541513.0, 1740541574.0, 1740541635.0, 1740541696.0, 1740541757.0, 1740541818.0, 1740541879.0, 1740541940.0, 1740
[2025-02-26 00:01:42] 2025-02-26 05:01:28,812 | INFO     | sum of square deviations: 130793150.0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,813 | INFO     | sum of deviations: 18762295759.000004
[2025-02-26 00:01:42] 2025-02-26 05:01:28,813 | INFO     | mean x: 1740543648.0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,813 | INFO     | mean y: 2615187.546666667
[2025-02-26 00:01:42] 2025-02-26 05:01:28,813 | INFO     | -- intersect: -249678615864.88074
[2025-02-26 00:01:42] 2025-02-26 05:01:28,813 | INFO     | intersect: -249678615864.88074
[2025-02-26 00:01:42] 2025-02-26 05:01:28,814 | INFO     | chi2: 2.283331376440585
[2025-02-26 00:01:42] 2025-02-26 05:01:28,814 | INFO     | -- intersect: -249678615864.88074
[2025-02-26 00:01:42] 2025-02-26 05:01:28,814 | INFO     | current memory leak: 143.45 B/s (using 75 data points, chi2=2.28)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | ..............................
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . Timing measurements:
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . get job = 0 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . initial setup = 2 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . payload setup = 7 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . stage-in = 0 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,815 | INFO     | . payload execution = 4992 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,816 | INFO     | . stage-out = 0 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,816 | INFO     | . log creation = 0 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,816 | INFO     | ..............................
[2025-02-26 00:01:42] 2025-02-26 05:01:28,897 | INFO     | 
[2025-02-26 00:01:42] 2025-02-26 05:01:28,898 | INFO     | job summary report
[2025-02-26 00:01:42] 2025-02-26 05:01:28,898 | INFO     | --------------------------------------------------
[2025-02-26 00:01:42] 2025-02-26 05:01:28,898 | INFO     | PanDA job id: 6531065082
[2025-02-26 00:01:42] 2025-02-26 05:01:28,898 | INFO     | task id: 43401155
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | errors: (none)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | pilot state: finished 
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | transexitcode: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | exeerrorcode: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,899 | INFO     | exeerrordiag: 
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | exitcode: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | exitmsg: OK
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | cpuconsumptiontime: 46848 s
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | nevents: 400
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | neventsw: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,900 | INFO     | pid: 15190
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | pgrp: 15190
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | corecount: 12
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | event service: False
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | sizes: {0: 2370381, 5: 2370587, 11: 2370643, 5003: 2396754, 5004: 2396753, 5005: 2405750, 5008: 2405934, 5016: 2406104}
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | --------------------------------------------------
[2025-02-26 00:01:42] 2025-02-26 05:01:28,901 | INFO     | 
[2025-02-26 00:01:42] 2025-02-26 05:01:28,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-26 00:01:42] 2025-02-26 05:01:28,925 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,925 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,925 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,925 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,926 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,927 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-26 00:01:42] 2025-02-26 05:01:28,928 | INFO     | job 6531065082 has completed (purged errors)
[2025-02-26 00:01:42] 2025-02-26 05:01:28,929 | INFO     | overall cleanup function is called
[2025-02-26 00:01:42] 2025-02-26 05:01:29,678 | INFO     | PID=8824 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-02-26 00:01:42] 2025-02-26 05:01:29,936 | INFO     | --- collectZombieJob: --- 10, [15190]
[2025-02-26 00:01:42] 2025-02-26 05:01:29,937 | INFO     | zombie collector waiting for pid 15190
[2025-02-26 00:01:42] 2025-02-26 05:01:29,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-26 00:01:42] 2025-02-26 05:01:29,937 | INFO     | collected zombie processes
[2025-02-26 00:01:42] 2025-02-26 05:01:29,937 | INFO     | will attempt to kill all subprocesses of pid=15190
[2025-02-26 00:01:42] 2025-02-26 05:01:30,000 | INFO     | process IDs to be killed: [15190] (in reverse order)
[2025-02-26 00:01:42] 2025-02-26 05:01:30,049 | WARNING  | found no corresponding commands to process id(s)
[2025-02-26 00:01:42] 2025-02-26 05:01:30,050 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-26 00:01:42] 2025-02-26 05:01:30,053 | INFO     | did not find any defunct processes belonging to 15190
[2025-02-26 00:01:42] 2025-02-26 05:01:30,057 | INFO     | did not find any defunct processes belonging to 15190
[2025-02-26 00:01:42] 2025-02-26 05:01:30,058 | INFO     | ready for new job
[2025-02-26 00:01:42] 2025-02-26 05:01:30,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-26 00:01:42] 2025-02-26 05:01:30,059 | INFO     | **************************************
[2025-02-26 00:01:42] 2025-02-26 05:01:30,059 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-26 00:01:42] 2025-02-26 05:01:30,059 | INFO     | **************************************
[2025-02-26 00:01:42] 2025-02-26 05:01:30,059 | INFO     | 
[2025-02-26 00:01:42] 2025-02-26 05:01:30,060 | INFO     | architecture information:
[2025-02-26 00:01:42] 2025-02-26 05:01:30,061 | INFO     | executing command: cat /etc/os-release
[2025-02-26 00:01:42] 2025-02-26 05:01:30,076 | INFO     | cat /etc/os-release:
[2025-02-26 00:01:42] NAME="CentOS Linux"
[2025-02-26 00:01:42] VERSION="7 (Core)"
[2025-02-26 00:01:42] ID="centos"
[2025-02-26 00:01:42] ID_LIKE="rhel fedora"
[2025-02-26 00:01:42] VERSION_ID="7"
[2025-02-26 00:01:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-26 00:01:42] ANSI_COLOR="0;31"
[2025-02-26 00:01:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-26 00:01:42] HOME_URL="https://www.centos.org/"
[2025-02-26 00:01:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-26 00:01:42] 
[2025-02-26 00:01:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-26 00:01:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-26 00:01:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-26 00:01:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-26 00:01:42] 
[2025-02-26 00:01:42] 2025-02-26 05:01:30,076 | INFO     | **************************************
[2025-02-26 00:01:42] 2025-02-26 05:01:30,579 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-26 00:01:42] 2025-02-26 05:01:30,596 | INFO     | sufficient remaining disk space (29367468032 B)
[2025-02-26 00:01:42] 2025-02-26 05:01:30,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-26 00:01:42] 2025-02-26 05:01:30,597 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-26 00:01:42] 2025-02-26 05:01:30,597 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-26 00:01:42] 2025-02-26 05:01:30,597 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-26 00:01:42] 2025-02-26 05:01:30,598 | INFO     | aborting loop
[2025-02-26 00:01:42] 2025-02-26 05:01:30,598 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-26 00:01:42] 2025-02-26 05:01:30,599 | INFO     | found 0 job(s) in 20 queues
[2025-02-26 00:01:42] 2025-02-26 05:01:30,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-26 00:01:42] 2025-02-26 05:01:30,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-26 00:01:42] 2025-02-26 05:01:30,686 | INFO     | all data control threads have been joined
[2025-02-26 00:01:42] 2025-02-26 05:01:30,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-26 00:01:42] 2025-02-26 05:01:31,421 | INFO     | all payload control threads have been joined
[2025-02-26 00:01:42] 2025-02-26 05:01:31,602 | INFO     | [job] retrieve thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:31,603 | INFO     | [job] queue monitor thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:31,604 | INFO     | [job] job monitor thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:31,622 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-26 00:01:42] 2025-02-26 05:01:31,692 | INFO     | [data] control thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:31,716 | INFO     | [data] copytool_in thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:31,908 | INFO     | [payload] failed_post thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,047 | INFO     | all job control threads have been joined
[2025-02-26 00:01:42] 2025-02-26 05:01:32,143 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,248 | INFO     | [job] validate thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,406 | INFO     | [payload] execute_payloads thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,426 | INFO     | [payload] control thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,480 | INFO     | [payload] validate_post thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,787 | INFO     | [job] create_data_payload thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,909 | INFO     | [data] copytool_out thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:32,945 | INFO     | [payload] validate_pre thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:33,049 | INFO     | [job] control thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:35,628 | INFO     | [data] queue_monitor thread has finished
[2025-02-26 00:01:42] 2025-02-26 05:01:37,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140241456809792)>', '<ExcThread(monitor, started 140240278779648)>']
[2025-02-26 00:01:42] 2025-02-26 05:01:37,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-26 00:01:42] 2025-02-26 05:01:37,635 | INFO     | [monitor] control thread has ended
[2025-02-26 00:01:42] 2025-02-26 05:01:42,269 | INFO     | all workflow threads have been joined
[2025-02-26 00:01:42] 2025-02-26 05:01:42,277 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-26 00:01:42] 2025-02-26 05:01:42,279 | INFO     | traces error code: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:42,279 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-26 00:01:42] 2025-02-26 05:01:42,369 [wrapper] ==== pilot stdout END ====
[2025-02-26 00:01:42] 2025-02-26 05:01:42,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-26 00:01:42] 2025-02-26 05:01:42,377 [wrapper] pilotpid: 8824
[2025-02-26 00:01:42] 2025-02-26 05:01:42,381 [wrapper] Pilot exit status: 0
[2025-02-26 00:01:42] 2025-02-26 05:01:42,397 [wrapper] pandaids: 6531065082
[2025-02-26 00:01:42] 2025-02-26 05:01:42,434 [wrapper] cleanup supervisor_pilot 26670 8825
[2025-02-26 00:01:42] 2025-02-26 05:01:42,438 [wrapper] Test setup, not cleaning
[2025-02-26 00:01:42] 2025-02-26 05:01:42,445 [wrapper] apfmon messages muted
[2025-02-26 00:01:42] 2025-02-26 05:01:42,449 [wrapper] ==== wrapper stdout END ====
[2025-02-26 00:01:42] 2025-02-26 05:01:42,453 [wrapper] ==== wrapper stderr END ====
[2025-02-26 00:01:42]  *** Error codes and diagnostics ***
[2025-02-26 00:01:42]     "exeErrorCode": 0,
[2025-02-26 00:01:42]     "exeErrorDiag": "",
[2025-02-26 00:01:42]     "pilotErrorCode": 0,
[2025-02-26 00:01:42]     "pilotErrorDiag": "",
[2025-02-26 00:01:42]  *** Listing of results directory ***
[2025-02-26 00:01:42] total 427700
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 17:04 pilot3.tar.gz
[2025-02-26 00:01:42] -rwx------ 1 boincer umatlas     35865 Feb 25 17:25 runpilot2-wrapper.sh
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 17:26 queuedata.json
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas       100 Feb 25 22:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-26 00:01:42] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 22:37 run_atlas
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas       105 Feb 25 22:37 job.xml
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas 250890070 Feb 25 22:37 EVNT.43401153._000083.pool.root.1
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 22:37 start_atlas.sh
[2025-02-26 00:01:42] drwxrwx--x 2 boincer umatlas      4096 Feb 25 22:37 shared
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 22:37 input.tar.gz
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas         0 Feb 25 22:37 boinc_lockfile
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas      2539 Feb 25 22:37 pandaJob.out
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas       424 Feb 25 22:37 setup.sh.local
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas    987482 Feb 25 22:37 agis_schedconf.cvmfs.json
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas   1573632 Feb 25 22:37 agis_ddmendpoints.agis.ALL.json
[2025-02-26 00:01:42] drwx------ 4 boincer umatlas      4096 Feb 25 22:37 pilot3
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas      5868 Feb 25 23:56 init_data.xml
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas        95 Feb 26 00:00 pilot_heartbeat.json
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas 181616243 Feb 26 00:00 HITS.43401155._002057.pool.root.1
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas       529 Feb 26 00:01 boinc_task_state.xml
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas      1045 Feb 26 00:01 memory_monitor_summary.json
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas    360197 Feb 26 00:01 log.43401155._002057.job.log.tgz.1
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas      7760 Feb 26 00:01 heartbeat.json
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas      8192 Feb 26 00:01 boinc_mmap_file
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas        27 Feb 26 00:01 wrapper_checkpoint.txt
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas      4338 Feb 26 00:01 pilotlog.txt
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas    471547 Feb 26 00:01 log.43401155._002057.job.log.1
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas       357 Feb 26 00:01 output.list
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas       620 Feb 26 00:01 runtime_log
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas    849920 Feb 26 00:01 result.tar.gz
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas       657 Feb 26 00:01 0LZNDmdXI76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmcagKDmtRO1Im.diag
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas     11010 Feb 26 00:01 runtime_log.err
[2025-02-26 00:01:42] -rw-r--r-- 1 boincer umatlas     21927 Feb 26 00:01 stderr.txt
[2025-02-26 00:01:42] HITS file was successfully produced:
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas 181616243 Feb 26 00:00 shared/HITS.pool.root.1
[2025-02-26 00:01:42]  *** Contents of shared directory: ***
[2025-02-26 00:01:42] total 423720
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas 250890070 Feb 25 22:37 ATLAS.root_0
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 22:37 start_atlas.sh
[2025-02-26 00:01:42] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 22:37 input.tar.gz
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas 181616243 Feb 26 00:00 HITS.pool.root.1
[2025-02-26 00:01:42] -rw------- 1 boincer umatlas    849920 Feb 26 00:01 result.tar.gz
00:01:44 (5145): run_atlas exited; CPU time 46774.405868
00:01:44 (5145): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN