Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-25 22:08:34 (23376): Detected: vboxwrapper 26206
2025-02-25 22:08:34 (23376): Detected: BOINC client v8.0.4
2025-02-25 22:08:34 (23376): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-25 22:08:34 (23376): Successfully copied 'init_data.xml' to the shared directory.
2025-02-25 22:08:35 (23376): Create VM. (boinc_9dcbaec688e82dfc, slot#1)
2025-02-25 22:08:35 (23376): Setting Memory Size for VM. (4400MB)
2025-02-25 22:08:36 (23376): Setting CPU Count for VM. (4)
2025-02-25 22:08:36 (23376): Setting Chipset Options for VM.
2025-02-25 22:08:36 (23376): Setting Graphics Controller Options for VM.
2025-02-25 22:08:36 (23376): Setting Boot Options for VM.
2025-02-25 22:08:37 (23376): Setting Network Configuration for NAT.
2025-02-25 22:08:37 (23376): Enabling VM Network Access.
2025-02-25 22:08:37 (23376): Disabling USB Support for VM.
2025-02-25 22:08:37 (23376): Disabling COM Port Support for VM.
2025-02-25 22:08:38 (23376): Disabling LPT Port Support for VM.
2025-02-25 22:08:38 (23376): Disabling Audio Support for VM.
2025-02-25 22:08:38 (23376): Disabling Clipboard Support for VM.
2025-02-25 22:08:38 (23376): Disabling Drag and Drop Support for VM.
2025-02-25 22:08:39 (23376): Adding storage controller(s) to VM.
2025-02-25 22:08:39 (23376): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-25 22:08:39 (23376): Adding VirtualBox Guest Additions to VM.
2025-02-25 22:08:40 (23376): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-25 22:08:40 (23376): forwarding host port 56279 to guest port 80
2025-02-25 22:08:40 (23376): Enabling remote desktop for VM.
2025-02-25 22:08:40 (23376): Required extension pack not installed, remote desktop not enabled.
2025-02-25 22:08:40 (23376): Enabling shared directory for VM.
2025-02-25 22:08:41 (23376): Starting VM using VBoxManage interface. (boinc_9dcbaec688e82dfc, slot#1)
2025-02-25 22:08:45 (23376): Successfully started VM. (PID = '22552')
2025-02-25 22:08:45 (23376): Reporting VM Process ID to BOINC.
2025-02-25 22:08:45 (23376): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-25 22:08:45 (23376): Guest Log: CPUID EDX: 0x178bfbff
2025-02-25 22:08:45 (23376): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-25 22:08:45 (23376): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-25 22:08:45 (23376): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-25 22:08:45 (23376): Detected: Web Application Enabled (http://localhost:56279)
2025-02-25 22:08:45 (23376): Preference change detected
2025-02-25 22:08:45 (23376): Setting CPU throttle for VM. (100%)
2025-02-25 22:08:45 (23376): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-25 22:08:47 (23376): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-25 22:08:47 (23376): Guest Log: BIOS: Booting from Hard Disk...
2025-02-25 22:08:49 (23376): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-25 22:08:49 (23376): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-25 22:08:49 (23376): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-25 22:08:56 (23376): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-25 22:08:56 (23376): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-25 22:09:03 (23376): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000126 main     Log opened 2025-02-25T22:09:01.300569000Z
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000199 main     OS Product: Linux
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000244 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000265 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000285 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000285 main     Process ID: 1311
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.000285 main     Package type: LINUX_64BITS_GENERIC
2025-02-25 22:09:03 (23376): Guest Log: 00:00:00.003021 main     5.2.32 r132073 started. Verbose level = 0
2025-02-25 22:09:03 (23376): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-25 22:09:03 (23376): Guest Log: [INFO] Mounting shared directory
2025-02-25 22:09:03 (23376): Guest Log: [INFO] Checking for init_data.xml
2025-02-25 22:09:06 (23376): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-25 22:09:06 (23376): Guest Log: [INFO] Detected branch: prod
2025-02-25 22:09:07 (23376): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-25 22:09:07 (23376): Guest Log: Copying input files
2025-02-25 22:09:08 (23376): Guest Log: Copied input files into RunAtlas.
2025-02-25 22:09:08 (23376): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-25 22:09:08 (23376): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-25 22:09:08 (23376): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-25 22:09:08 (23376): Guest Log: Further information can be found at the LHC@home message board.
2025-02-25 22:09:13 (23376): Guest Log: 00:00:10.031060 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 902 118 000ns (GuestNow=1 740 539 353 225 789 000 ns GuestLast=1 740 521 341 323 671 000 ns fSetTimeLastLoop=true )
2025-02-25 22:09:16 (23376): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-25 22:09:16 (23376): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-25 22:09:16 (23376): Guest Log: 2.6.3.0 1602 0 30156 143060 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-25 22:09:17 (23376): Guest Log: copied the webapp to /var/www
2025-02-25 22:09:17 (23376): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-25 22:09:17 (23376): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-25 22:09:17 (23376): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-25 22:09:17 (23376): Guest Log:  *** Starting ATLAS job. (PandaID=6531061813 taskID=43401155) ***
2025-02-25 23:48:50 (23376): Status Report: Elapsed Time: '6000.000000'
2025-02-25 23:48:50 (23376): Status Report: CPU Time: '8977.187500'
2025-02-26 01:28:56 (23376): Status Report: Elapsed Time: '12000.000000'
2025-02-26 01:28:56 (23376): Status Report: CPU Time: '24309.859375'
2025-02-26 02:17:19 (23376): Guest Log:  *** Job finished ***
2025-02-26 02:17:19 (23376): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:08,374 | INFO     | [payload] control thread has finished
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:08,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:12,455 | INFO     | [data] queue_monitor thread has finished
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:12,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140168090392384)>', '<ExcThread(monitor, started 140167046223616)>']
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:13,468 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:13,469 | INFO     | [monitor] control thread has ended
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,635 | INFO     | all workflow threads have been joined
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,635 | INFO     | end of generic workflow (traces error code: 0)
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,636 | INFO     | traces error code: 0
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,636 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,701 [wrapper] ==== pilot stdout END ====
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,713 [wrapper] ==== wrapper stdout RESUME ====
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,721 [wrapper] pilotpid: 5923
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,735 [wrapper] Pilot exit status: 0
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,813 [wrapper] pandaids: 6531061813
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,909 [wrapper] cleanup supervisor_pilot 18203 5924
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,918 [wrapper] Test setup, not cleaning
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,953 [wrapper] apfmon messages muted
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,970 [wrapper] ==== wrapper stdout END ====
2025-02-26 02:17:19 (23376): Guest Log: 2025-02-26 07:17:17,986 [wrapper] ==== wrapper stderr END ====
2025-02-26 02:17:19 (23376): Guest Log:  *** Error codes and diagnostics ***
2025-02-26 02:17:19 (23376): Guest Log:     "exeErrorCode": 68,
2025-02-26 02:17:19 (23376): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"ToolSvc.G4AtlasDetectorConstructionTool                      0   FATAL Failed to initialize SDs for worker thread\"\"",
2025-02-26 02:17:19 (23376): Guest Log:     "pilotErrorCode": 1305,
2025-02-26 02:17:19 (23376): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-26 07:16:32,570 CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Logfile error in log.EVNTtoHITS: \"ToolSvc.G4AtlasDetectorConstructionTool                      0   FATAL Failed to initialize",
2025-02-26 02:17:19 (23376): Guest Log:  *** Listing of results directory ***
2025-02-26 02:17:19 (23376): Guest Log: total 6584
2025-02-26 02:17:19 (23376): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 25 22:04 pilot3.tar.gz
2025-02-26 02:17:19 (23376): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 25 22:23 queuedata.json
2025-02-26 02:17:19 (23376): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 25 22:23 runpilot2-wrapper.sh
2025-02-26 02:17:19 (23376): Guest Log: -rwxr-xr-x. 1 atlas atlas   10782 Feb 26 03:09 init_data.xml
2025-02-26 02:17:19 (23376): Guest Log: -rwxr-xr-x. 1 atlas atlas  503549 Feb 26 03:09 input.tar.gz
2025-02-26 02:17:19 (23376): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 26 03:09 start_atlas.sh
2025-02-26 02:17:19 (23376): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 26 03:09 EVNT.43401153._000047.pool.root.1 -> /data/./ATLAS.root_0
2025-02-26 02:17:19 (23376): Guest Log: -rw-r--r--. 1 atlas atlas    2539 Feb 26 03:09 pandaJob.out
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas     424 Feb 26 03:09 setup.sh.local
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas  987482 Feb 26 03:10 agis_schedconf.cvmfs.json
2025-02-26 02:17:19 (23376): Guest Log: drwx------. 4 atlas atlas    4096 Feb 26 03:10 pilot3
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas      95 Feb 26 07:16 pilot_heartbeat.json
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas    1031 Feb 26 07:16 memory_monitor_summary.json
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas  316858 Feb 26 07:16 log.43401155._001159.job.log.tgz.1
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas 1573632 Feb 26 07:16 agis_ddmendpoints.agis.ALL.json
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas   13372 Feb 26 07:17 heartbeat.json
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas    4275 Feb 26 07:17 pilotlog.txt
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas 1181043 Feb 26 07:17 log.43401155._001159.job.log.1
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas     188 Feb 26 07:17 output.list
2025-02-26 02:17:19 (23376): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 26 07:17 runtime_log
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas 1525760 Feb 26 07:17 result.tar.gz
2025-02-26 02:17:19 (23376): Guest Log: -rw-r--r--. 1 atlas atlas   10750 Feb 26 07:17 runtime_log.err
2025-02-26 02:17:19 (23376): Guest Log: -rw-------. 1 atlas atlas     649 Feb 26 07:17 nKMMDmTWI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmqGxKDmmj0Vkm.diag
2025-02-26 02:17:19 (23376): Guest Log: Looking for outputfile HITS.43401155._001159.pool.root.1
2025-02-26 02:17:19 (23376): Guest Log: No HITS file was produced
2025-02-26 02:17:19 (23376): Guest Log: Successfully finished the ATLAS job!
2025-02-26 02:17:19 (23376): Guest Log: Copying the results back to the shared directory!
2025-02-26 02:17:19 (23376): Guest Log:  *** Contents of shared directory: ***
2025-02-26 02:17:19 (23376): Guest Log: total 245636
2025-02-26 02:17:19 (23376): Guest Log: -rwxrwxrwx. 1 root root 249465123 Feb 26 03:08 ATLAS.root_0
2025-02-26 02:17:19 (23376): Guest Log: -rwxrwxrwx. 1 root root     10782 Feb 26 03:08 init_data.xml
2025-02-26 02:17:19 (23376): Guest Log: -rwxrwxrwx. 1 root root    503549 Feb 26 03:08 input.tar.gz
2025-02-26 02:17:19 (23376): Guest Log: -rwxrwxrwx. 1 root root   1525760 Feb 26 07:17 result.tar.gz
2025-02-26 02:17:19 (23376): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 26 03:08 start_atlas.sh
2025-02-26 02:17:19 (23376): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-26 02:17:19 (23376): VM Completion File Detected.
2025-02-26 02:17:19 (23376): Powering off VM.
2025-02-26 02:17:20 (23376): Successfully stopped VM.
2025-02-26 02:17:20 (23376): Deregistering VM. (boinc_9dcbaec688e82dfc, slot#1)
2025-02-26 02:17:20 (23376): Removing network bandwidth throttle group from VM.
2025-02-26 02:17:20 (23376): Removing VM from VirtualBox.
02:17:25 (23376): called boinc_finish(0)

</stderr_txt>
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