Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:33:00 (4262): wrapper (7.7.26015): starting
21:33:00 (4262): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 21:33:00] Arguments: --nthreads 8
[2025-02-25 21:33:00] Threads: 8
[2025-02-25 21:33:00] Checking for CVMFS
[2025-02-25 21:33:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 21:33:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 21:33:00] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 21:33:00] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 21:33:00] 
[2025-02-25 21:33:00] CVMFS is ok
[2025-02-25 21:33:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 21:33:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 21:33:00] Further information can be found at the LHC@home message board.
[2025-02-25 21:33:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 21:33:00] Checking for apptainer binary...
[2025-02-25 21:33:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 21:33:00] Running /usr/bin/apptainer --version
[2025-02-25 21:33:00] apptainer version 1.3.2-1.el7
[2025-02-25 21:33:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 21:33:01] c-212-18.aglt2.org
[2025-02-25 21:33:01] apptainer works
[2025-02-25 21:33:01] Set ATHENA_PROC_NUMBER=8
[2025-02-25 21:33:01] Set ATHENA_CORE_NUMBER=8
[2025-02-25 21:33:01] Starting ATLAS job with PandaID=6531079652
[2025-02-25 21:33:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 22:51:07]  *** The last 200 lines of the pilot log: ***
[2025-02-25 22:51:07]  is_tar=False
[2025-02-25 22:51:07]  lfn=log.43401171._002199.job.log.tgz.1
[2025-02-25 22:51:07]  mtime=0
[2025-02-25 22:51:07]  protocol_id=None
[2025-02-25 22:51:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 22:51:07]  replicas=None
[2025-02-25 22:51:07]  scope=mc23_13p6TeV
[2025-02-25 22:51:07]  status=None
[2025-02-25 22:51:07]  status_code=0
[2025-02-25 22:51:07]  storage_token=
[2025-02-25 22:51:07]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6531079652/log.43401171._002199.job.log.tgz.1
[2025-02-25 22:51:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/59/log.43401171._002199.job.log.tgz.1
[2025-02-25 22:51:07]  workdir=None
[2025-02-25 22:51:07] ]
[2025-02-25 22:51:07] 2025-02-26 03:50:49,290 | INFO     | transferring file log.43401171._002199.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6531079652/log.43401171._002199.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 22:51:07] 2025-02-26 03:50:49,290 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6531079652/log.43401171._002199.job.log.tgz.1 /tmp/boinchome/slots/5/log.43401171._002199.job
[2025-02-25 22:51:07] 2025-02-26 03:50:49,305 | INFO     | adding to output.list: log.43401171._002199.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/59/log.43401171._002199.job.log.tg
[2025-02-25 22:51:07] 2025-02-26 03:50:49,305 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 22:51:07] 2025-02-26 03:50:49,305 | INFO     | summary of transferred files:
[2025-02-25 22:51:07] 2025-02-26 03:50:49,305 | INFO     |  -- lfn=log.43401171._002199.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 22:51:07] 2025-02-26 03:50:49,305 | INFO     | stage-out finished correctly
[2025-02-25 22:51:07] 2025-02-26 03:50:51,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 22:51:07] 2025-02-26 03:50:53,227 | WARNING  | process 26784 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 22:51:07] 2025-02-26 03:50:53,227 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6531079652/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | job 6531079652 has state=finished
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | preparing for final server update for job 6531079652 in state='finished'
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | this job has now completed (state=finished)
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | log transfer has been attempted: DONE
[2025-02-25 22:51:07] 2025-02-26 03:50:53,379 | INFO     | job 6531079652 has finished - writing final server update
[2025-02-25 22:51:07] 2025-02-26 03:50:53,380 | INFO     | total number of processed events: 400 (read)
[2025-02-25 22:51:07] 2025-02-26 03:50:53,382 | INFO     | executing command: lscpu
[2025-02-25 22:51:07] 2025-02-26 03:50:53,399 | INFO     | number of running child processes to parent process 26784: 1
[2025-02-25 22:51:07] 2025-02-26 03:50:53,399 | INFO     | maximum number of monitored processes: 6
[2025-02-25 22:51:07] 2025-02-26 03:50:53,406 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 22:51:07] 2025-02-26 03:50:53,417 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 22:51:07] 2025-02-26 03:50:55,901 | INFO     | monitor loop #341: job 0:6531079652 is in state 'finished'
[2025-02-25 22:51:07] 2025-02-26 03:50:55,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,078 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6531079652/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | INFO     | extracted standard info from prmon json
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 22:51:07] 2025-02-26 03:50:56,079 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 22:51:07] 2025-02-26 03:50:56,080 | INFO     | fitting pss+swap vs Time
[2025-02-25 22:51:07] 2025-02-26 03:50:56,080 | INFO     | model: linear, x: [1740537514.0, 1740537575.0, 1740537636.0, 1740537697.0, 1740537758.0, 1740537819.0, 1740537880.0, 1740537941.0, 1740538002.0, 1740538063.0, 1740
[2025-02-25 22:51:07] 2025-02-26 03:50:56,080 | INFO     | sum of square deviations: 106336877.5
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | sum of deviations: 19452833052.5
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | mean x: 1740539618.5
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | mean y: 2367665.785714286
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | -- intersect: -318404824796.13837
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | intersect: -318404824796.13837
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | chi2: 2.1084536036275154
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | -- intersect: -318404824796.13837
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | current memory leak: 182.94 B/s (using 70 data points, chi2=2.11)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | ..............................
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . Timing measurements:
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . get job = 0 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . initial setup = 2 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . payload setup = 3 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . stage-in = 0 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . payload execution = 4639 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . stage-out = 0 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | . log creation = 0 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,081 | INFO     | ..............................
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | 
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | job summary report
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | --------------------------------------------------
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | PanDA job id: 6531079652
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | task id: 43401171
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | errors: (none)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | pilot state: finished 
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | transexitcode: 0
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | exeerrorcode: 0
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | exeerrordiag: 
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | exitcode: 0
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | exitmsg: OK
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | cpuconsumptiontime: 29600 s
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | nevents: 400
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | neventsw: 0
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | pid: 26784
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | pgrp: 26784
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | corecount: 8
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | event service: False
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | sizes: {0: 2370384, 2: 2370590, 10: 2370618, 4647: 2405684, 4649: 2405684, 4654: 2405854}
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | --------------------------------------------------
[2025-02-25 22:51:07] 2025-02-26 03:50:56,116 | INFO     | 
[2025-02-25 22:51:07] 2025-02-26 03:50:56,117 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | job 6531079652 has completed (purged errors)
[2025-02-25 22:51:07] 2025-02-26 03:50:56,129 | INFO     | overall cleanup function is called
[2025-02-25 22:51:07] 2025-02-26 03:50:57,136 | INFO     | --- collectZombieJob: --- 10, [26784]
[2025-02-25 22:51:07] 2025-02-26 03:50:57,136 | INFO     | zombie collector waiting for pid 26784
[2025-02-25 22:51:07] 2025-02-26 03:50:57,136 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 22:51:07] 2025-02-26 03:50:57,136 | INFO     | collected zombie processes
[2025-02-25 22:51:07] 2025-02-26 03:50:57,136 | INFO     | will attempt to kill all subprocesses of pid=26784
[2025-02-25 22:51:07] 2025-02-26 03:50:57,318 | INFO     | process IDs to be killed: [26784] (in reverse order)
[2025-02-25 22:51:07] 2025-02-26 03:50:57,436 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 22:51:07] 2025-02-26 03:50:57,436 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 22:51:07] 2025-02-26 03:50:57,449 | INFO     | did not find any defunct processes belonging to 26784
[2025-02-25 22:51:07] 2025-02-26 03:50:57,460 | INFO     | did not find any defunct processes belonging to 26784
[2025-02-25 22:51:07] 2025-02-26 03:50:57,460 | INFO     | ready for new job
[2025-02-25 22:51:07] 2025-02-26 03:50:57,460 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 22:51:07] 2025-02-26 03:50:57,461 | INFO     | **************************************
[2025-02-25 22:51:07] 2025-02-26 03:50:57,461 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 22:51:07] 2025-02-26 03:50:57,461 | INFO     | **************************************
[2025-02-25 22:51:07] 2025-02-26 03:50:57,461 | INFO     | 
[2025-02-25 22:51:07] 2025-02-26 03:50:57,465 | INFO     | architecture information:
[2025-02-25 22:51:07] 2025-02-26 03:50:57,465 | INFO     | executing command: cat /etc/os-release
[2025-02-25 22:51:07] 2025-02-26 03:50:57,478 | INFO     | cat /etc/os-release:
[2025-02-25 22:51:07] NAME="CentOS Linux"
[2025-02-25 22:51:07] VERSION="7 (Core)"
[2025-02-25 22:51:07] ID="centos"
[2025-02-25 22:51:07] ID_LIKE="rhel fedora"
[2025-02-25 22:51:07] VERSION_ID="7"
[2025-02-25 22:51:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 22:51:07] ANSI_COLOR="0;31"
[2025-02-25 22:51:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 22:51:07] HOME_URL="https://www.centos.org/"
[2025-02-25 22:51:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 22:51:07] 
[2025-02-25 22:51:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 22:51:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 22:51:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 22:51:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 22:51:07] 
[2025-02-25 22:51:07] 2025-02-26 03:50:57,479 | INFO     | **************************************
[2025-02-25 22:51:07] 2025-02-26 03:50:57,981 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | INFO     | sufficient remaining disk space (105138618368 B)
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 22:51:07] 2025-02-26 03:50:57,993 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 22:51:07] 2025-02-26 03:50:58,404 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-25 22:51:07] 2025-02-26 03:50:58,405 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-25 22:51:07] 2025-02-26 03:50:58,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:51:07] 2025-02-26 03:50:58,405 | INFO     | will abort loop
[2025-02-25 22:51:07] 2025-02-26 03:50:58,752 | INFO     | all payload control threads have been joined
[2025-02-25 22:51:07] 2025-02-26 03:50:58,952 | INFO     | all data control threads have been joined
[2025-02-25 22:51:07] 2025-02-26 03:50:58,998 | INFO     | [job] queue monitor thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:58,998 | INFO     | [job] retrieve thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,178 | INFO     | [data] copytool_in thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,201 | INFO     | [job] validate thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,205 | INFO     | all job control threads have been joined
[2025-02-25 22:51:07] 2025-02-26 03:50:59,278 | INFO     | PID=9319 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-02-25 22:51:07] 2025-02-26 03:50:59,279 | INFO     | .. there are 45 such processes running
[2025-02-25 22:51:07] 2025-02-26 03:50:59,279 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 22:51:07] 2025-02-26 03:50:59,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 22:51:07] 2025-02-26 03:50:59,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 22:51:07] 2025-02-26 03:50:59,409 | INFO     | [job] job monitor thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,504 | INFO     | [payload] validate_post thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,724 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,753 | INFO     | [payload] control thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,895 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,955 | INFO     | [data] control thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:50:59,996 | INFO     | [data] copytool_out thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:00,180 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:00,209 | INFO     | [job] control thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:00,379 | INFO     | [payload] failed_post thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:00,456 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:01,997 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 22:51:07] 2025-02-26 03:51:02,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139952201819968)>', '<ExcThread(monitor, started 139951626770176)>']
[2025-02-25 22:51:07] 2025-02-26 03:51:03,294 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 22:51:07] 2025-02-26 03:51:03,294 | INFO     | [monitor] control thread has ended
[2025-02-25 22:51:07] 2025-02-26 03:51:07,606 | INFO     | all workflow threads have been joined
[2025-02-25 22:51:07] 2025-02-26 03:51:07,606 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 22:51:07] 2025-02-26 03:51:07,606 | INFO     | traces error code: 0
[2025-02-25 22:51:07] 2025-02-26 03:51:07,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 22:51:07] 2025-02-26 03:51:07,660 [wrapper] ==== pilot stdout END ====
[2025-02-25 22:51:07] 2025-02-26 03:51:07,664 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 22:51:07] 2025-02-26 03:51:07,694 [wrapper] pilotpid: 9319
[2025-02-25 22:51:07] 2025-02-26 03:51:07,696 [wrapper] Pilot exit status: 0
[2025-02-25 22:51:07] 2025-02-26 03:51:07,701 [wrapper] pandaids: 6531079652
[2025-02-25 22:51:07] 2025-02-26 03:51:07,770 [wrapper] cleanup supervisor_pilot 96837 9320
[2025-02-25 22:51:07] 2025-02-26 03:51:07,772 [wrapper] Test setup, not cleaning
[2025-02-25 22:51:07] 2025-02-26 03:51:07,775 [wrapper] apfmon messages muted
[2025-02-25 22:51:07] 2025-02-26 03:51:07,776 [wrapper] ==== wrapper stdout END ====
[2025-02-25 22:51:07] 2025-02-26 03:51:07,778 [wrapper] ==== wrapper stderr END ====
[2025-02-25 22:51:07]  *** Error codes and diagnostics ***
[2025-02-25 22:51:07]     "exeErrorCode": 0,
[2025-02-25 22:51:07]     "exeErrorDiag": "",
[2025-02-25 22:51:07]     "pilotErrorCode": 0,
[2025-02-25 22:51:07]     "pilotErrorDiag": "",
[2025-02-25 22:51:07]  *** Listing of results directory ***
[2025-02-25 22:51:07] total 428472
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 17:35 pilot3.tar.gz
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 17:56 queuedata.json
[2025-02-25 22:51:07] -rwx------ 1 boincer umatlas     35865 Feb 25 17:58 runpilot2-wrapper.sh
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas       100 Feb 25 21:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 22:51:07] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 21:32 run_atlas
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas       105 Feb 25 21:32 job.xml
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas 249042137 Feb 25 21:33 EVNT.43401169._000088.pool.root.1
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 21:33 start_atlas.sh
[2025-02-25 22:51:07] drwxrwx--x 2 boincer umatlas      4096 Feb 25 21:33 shared
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas    503559 Feb 25 21:33 input.tar.gz
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas         0 Feb 25 21:33 boinc_lockfile
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas      2542 Feb 25 21:33 pandaJob.out
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas       424 Feb 25 21:33 setup.sh.local
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas    987482 Feb 25 21:33 agis_schedconf.cvmfs.json
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas   1573632 Feb 25 21:33 agis_ddmendpoints.agis.ALL.json
[2025-02-25 22:51:07] drwx------ 4 boincer umatlas      4096 Feb 25 21:33 pilot3
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas      6300 Feb 25 22:47 init_data.xml
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas 184390761 Feb 25 22:50 HITS.43401171._002199.pool.root.1
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas       529 Feb 25 22:50 boinc_task_state.xml
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas      1071 Feb 25 22:50 memory_monitor_summary.json
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas    301076 Feb 25 22:50 log.43401171._002199.job.log.tgz.1
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 22:50 boinc_mmap_file
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas        27 Feb 25 22:50 wrapper_checkpoint.txt
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas        95 Feb 25 22:50 pilot_heartbeat.json
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas      7730 Feb 25 22:50 heartbeat.json
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas      4794 Feb 25 22:51 pilotlog.txt
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas    459092 Feb 25 22:51 log.43401171._002199.job.log.1
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas       357 Feb 25 22:51 output.list
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas       620 Feb 25 22:51 runtime_log
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas    778240 Feb 25 22:51 result.tar.gz
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas       657 Feb 25 22:51 XkXKDmX3I76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpVxKDmJuQMEm.diag
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas     11013 Feb 25 22:51 runtime_log.err
[2025-02-25 22:51:07] -rw-r--r-- 1 boincer umatlas     21388 Feb 25 22:51 stderr.txt
[2025-02-25 22:51:07] HITS file was successfully produced:
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas 184390761 Feb 25 22:50 shared/HITS.pool.root.1
[2025-02-25 22:51:07]  *** Contents of shared directory: ***
[2025-02-25 22:51:07] total 424560
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas 249042137 Feb 25 21:33 ATLAS.root_0
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 21:33 start_atlas.sh
[2025-02-25 22:51:07] -rw-r--r-- 2 boincer umatlas    503559 Feb 25 21:33 input.tar.gz
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas 184390761 Feb 25 22:50 HITS.pool.root.1
[2025-02-25 22:51:07] -rw------- 1 boincer umatlas    778240 Feb 25 22:51 result.tar.gz
22:51:09 (4262): run_atlas exited; CPU time 29369.068100
22:51:09 (4262): called boinc_finish(0)

</stderr_txt>
]]>

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