Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:51:23 (2587): wrapper (7.7.26015): starting
20:51:23 (2587): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 20:51:23] Arguments: --nthreads 8
[2025-02-25 20:51:23] Threads: 8
[2025-02-25 20:51:23] Checking for CVMFS
[2025-02-25 20:51:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 20:51:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 20:51:23] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 20:51:23] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 20:51:23] 
[2025-02-25 20:51:23] CVMFS is ok
[2025-02-25 20:51:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 20:51:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 20:51:23] Further information can be found at the LHC@home message board.
[2025-02-25 20:51:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 20:51:23] Checking for apptainer binary...
[2025-02-25 20:51:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 20:51:23] Running /usr/bin/apptainer --version
[2025-02-25 20:51:24] apptainer version 1.3.2-1.el7
[2025-02-25 20:51:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 20:51:24] c-212-5.aglt2.org
[2025-02-25 20:51:24] apptainer works
[2025-02-25 20:51:24] Set ATHENA_PROC_NUMBER=8
[2025-02-25 20:51:24] Set ATHENA_CORE_NUMBER=8
[2025-02-25 20:51:24] Starting ATLAS job with PandaID=6531059413
[2025-02-25 20:51:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 22:13:10]  *** The last 200 lines of the pilot log: ***
[2025-02-25 22:13:10]  is_altstaged=None
[2025-02-25 22:13:10]  is_tar=False
[2025-02-25 22:13:10]  lfn=log.43401155._000311.job.log.tgz.1
[2025-02-25 22:13:10]  mtime=0
[2025-02-25 22:13:10]  protocol_id=None
[2025-02-25 22:13:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 22:13:10]  replicas=None
[2025-02-25 22:13:10]  scope=mc23_13p6TeV
[2025-02-25 22:13:10]  status=None
[2025-02-25 22:13:10]  status_code=0
[2025-02-25 22:13:10]  storage_token=
[2025-02-25 22:13:10]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6531059413/log.43401155._000311.job.log.tgz.1
[2025-02-25 22:13:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b9/log.43401155._000311.job.log.tgz.1
[2025-02-25 22:13:10]  workdir=None
[2025-02-25 22:13:10] ]
[2025-02-25 22:13:10] 2025-02-26 03:12:41,398 | INFO     | transferring file log.43401155._000311.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6531059413/log.43401155._000311.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 22:13:10] 2025-02-26 03:12:41,398 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6531059413/log.43401155._000311.job.log.tgz.1 /tmp/boinchome/slots/4/log.43401155._000311.job
[2025-02-25 22:13:10] 2025-02-26 03:12:41,412 | INFO     | adding to output.list: log.43401155._000311.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ab/b9/log.43401155._000311.job.log.tg
[2025-02-25 22:13:10] 2025-02-26 03:12:41,412 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 22:13:10] 2025-02-26 03:12:41,413 | INFO     | summary of transferred files:
[2025-02-25 22:13:10] 2025-02-26 03:12:41,413 | INFO     |  -- lfn=log.43401155._000311.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 22:13:10] 2025-02-26 03:12:41,413 | INFO     | stage-out finished correctly
[2025-02-25 22:13:10] 2025-02-26 03:12:43,658 | INFO     | monitor loop #362: job 0:6531059413 is in state 'finished'
[2025-02-25 22:13:10] 2025-02-26 03:12:43,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:13:10] 2025-02-26 03:12:43,930 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 22:13:10] 2025-02-26 03:12:46,161 | INFO     | monitor loop #363: job 0:6531059413 is in state 'finished'
[2025-02-25 22:13:10] 2025-02-26 03:12:46,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:13:10] 2025-02-26 03:12:46,878 | INFO     | job 6531059413 has state=finished
[2025-02-25 22:13:10] 2025-02-26 03:12:46,878 | INFO     | preparing for final server update for job 6531059413 in state='finished'
[2025-02-25 22:13:10] 2025-02-26 03:12:46,879 | INFO     | this job has now completed (state=finished)
[2025-02-25 22:13:10] 2025-02-26 03:12:46,879 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 22:13:10] 2025-02-26 03:12:46,879 | INFO     | log transfer has been attempted: DONE
[2025-02-25 22:13:10] 2025-02-26 03:12:46,879 | INFO     | job 6531059413 has finished - writing final server update
[2025-02-25 22:13:10] 2025-02-26 03:12:46,879 | INFO     | total number of processed events: 400 (read)
[2025-02-25 22:13:10] 2025-02-26 03:12:46,882 | INFO     | executing command: lscpu
[2025-02-25 22:13:10] 2025-02-26 03:12:46,904 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 22:13:10] 2025-02-26 03:12:46,917 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 22:13:10] 2025-02-26 03:12:48,664 | INFO     | monitor loop #364: job 0:6531059413 is in state 'finished'
[2025-02-25 22:13:10] 2025-02-26 03:12:48,665 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:13:10] 2025-02-26 03:12:48,722 | INFO     | PID=9474 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-02-25 22:13:10] 2025-02-26 03:12:48,722 | INFO     | .. there are 39 such processes running
[2025-02-25 22:13:10] 2025-02-26 03:12:49,488 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-25 22:13:10] 2025-02-26 03:12:49,488 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6531059413/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 22:13:10] 2025-02-26 03:12:49,489 | INFO     | extracted standard info from prmon json
[2025-02-25 22:13:10] 2025-02-26 03:12:49,489 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 22:13:10] 2025-02-26 03:12:49,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 22:13:10] 2025-02-26 03:12:49,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 22:13:10] 2025-02-26 03:12:49,489 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 22:13:10] 2025-02-26 03:12:49,490 | INFO     | fitting pss+swap vs Time
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | model: linear, x: [1740535016.0, 1740535077.0, 1740535138.0, 1740535199.0, 1740535260.0, 1740535321.0, 1740535382.0, 1740535443.0, 1740535504.0, 1740535565.0, 1740
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | sum of square deviations: 120605052.0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | sum of deviations: 24902179145.0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | mean x: 1740537212.0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | mean y: 2339280.0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | -- intersect: -359378704407.64624
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | intersect: -359378704407.64624
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | chi2: 2.488394645844112
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | -- intersect: -359378704407.64624
[2025-02-25 22:13:10] 2025-02-26 03:12:49,491 | INFO     | current memory leak: 206.48 B/s (using 73 data points, chi2=2.49)
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | ..............................
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . Timing measurements:
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . get job = 0 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . initial setup = 1 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . payload setup = 3 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . stage-in = 0 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . payload execution = 4849 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . stage-out = 0 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | . log creation = 0 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,492 | INFO     | ..............................
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | 
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | job summary report
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | --------------------------------------------------
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | PanDA job id: 6531059413
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | task id: 43401155
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | errors: (none)
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | pilot state: finished 
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | transexitcode: 0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | exeerrorcode: 0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | exeerrordiag: 
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | exitcode: 0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | exitmsg: OK
[2025-02-25 22:13:10] 2025-02-26 03:12:49,847 | INFO     | cpuconsumptiontime: 30827 s
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | nevents: 400
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | neventsw: 0
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | pid: 18475
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | pgrp: 18475
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | corecount: 8
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | event service: False
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | sizes: {0: 2370206, 1: 2370405, 4: 2370611, 11: 2370639, 4857: 2396845, 4858: 2405786, 4860: 2405970, 4866: 2406140}
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | --------------------------------------------------
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | 
[2025-02-25 22:13:10] 2025-02-26 03:12:49,848 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,860 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 22:13:10] 2025-02-26 03:12:49,861 | INFO     | job 6531059413 has completed (purged errors)
[2025-02-25 22:13:10] 2025-02-26 03:12:49,861 | INFO     | overall cleanup function is called
[2025-02-25 22:13:10] 2025-02-26 03:12:50,867 | INFO     | --- collectZombieJob: --- 10, [18475]
[2025-02-25 22:13:10] 2025-02-26 03:12:50,867 | INFO     | zombie collector waiting for pid 18475
[2025-02-25 22:13:10] 2025-02-26 03:12:50,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 22:13:10] 2025-02-26 03:12:50,868 | INFO     | collected zombie processes
[2025-02-25 22:13:10] 2025-02-26 03:12:50,868 | INFO     | will attempt to kill all subprocesses of pid=18475
[2025-02-25 22:13:10] 2025-02-26 03:12:51,080 | INFO     | process IDs to be killed: [18475] (in reverse order)
[2025-02-25 22:13:10] 2025-02-26 03:12:51,206 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 22:13:10] 2025-02-26 03:12:51,206 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 22:13:10] 2025-02-26 03:12:51,214 | INFO     | did not find any defunct processes belonging to 18475
[2025-02-25 22:13:10] 2025-02-26 03:12:51,221 | INFO     | did not find any defunct processes belonging to 18475
[2025-02-25 22:13:10] 2025-02-26 03:12:51,221 | INFO     | ready for new job
[2025-02-25 22:13:10] 2025-02-26 03:12:51,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 22:13:10] 2025-02-26 03:12:51,222 | INFO     | **************************************
[2025-02-25 22:13:10] 2025-02-26 03:12:51,222 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 22:13:10] 2025-02-26 03:12:51,222 | INFO     | **************************************
[2025-02-25 22:13:10] 2025-02-26 03:12:51,222 | INFO     | 
[2025-02-25 22:13:10] 2025-02-26 03:12:51,224 | INFO     | architecture information:
[2025-02-25 22:13:10] 2025-02-26 03:12:51,224 | INFO     | executing command: cat /etc/os-release
[2025-02-25 22:13:10] 2025-02-26 03:12:51,236 | INFO     | cat /etc/os-release:
[2025-02-25 22:13:10] NAME="CentOS Linux"
[2025-02-25 22:13:10] VERSION="7 (Core)"
[2025-02-25 22:13:10] ID="centos"
[2025-02-25 22:13:10] ID_LIKE="rhel fedora"
[2025-02-25 22:13:10] VERSION_ID="7"
[2025-02-25 22:13:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 22:13:10] ANSI_COLOR="0;31"
[2025-02-25 22:13:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 22:13:10] HOME_URL="https://www.centos.org/"
[2025-02-25 22:13:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 22:13:10] 
[2025-02-25 22:13:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 22:13:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 22:13:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 22:13:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 22:13:10] 
[2025-02-25 22:13:10] 2025-02-26 03:12:51,236 | INFO     | **************************************
[2025-02-25 22:13:10] 2025-02-26 03:12:51,739 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-02-25 22:13:10] 2025-02-26 03:12:51,753 | INFO     | sufficient remaining disk space (103997767680 B)
[2025-02-25 22:13:10] 2025-02-26 03:12:51,753 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 22:13:10] 2025-02-26 03:12:51,753 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 22:13:10] 2025-02-26 03:12:51,783 | INFO     | all job control threads have been joined
[2025-02-25 22:13:10] 2025-02-26 03:12:51,985 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 22:13:10] 2025-02-26 03:12:52,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:13:10] 2025-02-26 03:12:52,173 | INFO     | aborting loop
[2025-02-25 22:13:10] 2025-02-26 03:12:52,621 | INFO     | all data control threads have been joined
[2025-02-25 22:13:10] 2025-02-26 03:12:52,732 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 22:13:10] 2025-02-26 03:12:52,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 22:13:10] 2025-02-26 03:12:52,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 22:13:10] 2025-02-26 03:12:52,758 | INFO     | [job] retrieve thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:52,782 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:52,789 | INFO     | [job] control thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:52,979 | INFO     | all payload control threads have been joined
[2025-02-25 22:13:10] 2025-02-26 03:12:53,013 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,123 | INFO     | [payload] validate_post thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,177 | INFO     | [job] job monitor thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,626 | INFO     | [data] control thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,872 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,966 | INFO     | [data] copytool_in thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,984 | INFO     | [payload] control thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:53,990 | INFO     | [data] copytool_out thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:54,020 | INFO     | [job] validate thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:54,277 | INFO     | [payload] failed_post thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:54,487 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 22:13:10] 2025-02-26 03:12:54,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:13:10] 2025-02-26 03:12:55,567 | INFO     | [job] queue monitor thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:12:58,492 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:13:02,108 | INFO     | job.realtimelogging is not enabled
[2025-02-25 22:13:10] 2025-02-26 03:13:03,113 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 22:13:10] 2025-02-26 03:13:05,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180411799360)>', '<ExcThread(monitor, started 140179746584320)>']
[2025-02-25 22:13:10] 2025-02-26 03:13:05,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 22:13:10] 2025-02-26 03:13:05,785 | INFO     | [monitor] control thread has ended
[2025-02-25 22:13:10] 2025-02-26 03:13:10,210 | INFO     | all workflow threads have been joined
[2025-02-25 22:13:10] 2025-02-26 03:13:10,211 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 22:13:10] 2025-02-26 03:13:10,211 | INFO     | traces error code: 0
[2025-02-25 22:13:10] 2025-02-26 03:13:10,211 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 22:13:10] 2025-02-26 03:13:10,321 [wrapper] ==== pilot stdout END ====
[2025-02-25 22:13:10] 2025-02-26 03:13:10,323 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 22:13:10] 2025-02-26 03:13:10,325 [wrapper] pilotpid: 9474
[2025-02-25 22:13:10] 2025-02-26 03:13:10,327 [wrapper] Pilot exit status: 0
[2025-02-25 22:13:10] 2025-02-26 03:13:10,333 [wrapper] pandaids: 6531059413
[2025-02-25 22:13:10] 2025-02-26 03:13:10,388 [wrapper] cleanup supervisor_pilot 43263 9475
[2025-02-25 22:13:10] 2025-02-26 03:13:10,390 [wrapper] Test setup, not cleaning
[2025-02-25 22:13:10] 2025-02-26 03:13:10,392 [wrapper] apfmon messages muted
[2025-02-25 22:13:10] 2025-02-26 03:13:10,394 [wrapper] ==== wrapper stdout END ====
[2025-02-25 22:13:10] 2025-02-26 03:13:10,396 [wrapper] ==== wrapper stderr END ====
[2025-02-25 22:13:10]  *** Error codes and diagnostics ***
[2025-02-25 22:13:10]     "exeErrorCode": 0,
[2025-02-25 22:13:10]     "exeErrorDiag": "",
[2025-02-25 22:13:10]     "pilotErrorCode": 0,
[2025-02-25 22:13:10]     "pilotErrorDiag": "",
[2025-02-25 22:13:10]  *** Listing of results directory ***
[2025-02-25 22:13:10] total 434580
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 17:04 pilot3.tar.gz
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 17:21 queuedata.json
[2025-02-25 22:13:10] -rwx------ 1 boincer umatlas     35865 Feb 25 17:22 runpilot2-wrapper.sh
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas       100 Feb 25 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 22:13:10] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 20:51 run_atlas
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas       105 Feb 25 20:51 job.xml
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas 251470990 Feb 25 20:51 EVNT.43401153._000013.pool.root.1
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:51 start_atlas.sh
[2025-02-25 22:13:10] drwxrwx--x 2 boincer umatlas      4096 Feb 25 20:51 shared
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas    503546 Feb 25 20:51 input.tar.gz
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas         0 Feb 25 20:51 boinc_lockfile
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas      2537 Feb 25 20:51 pandaJob.out
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas       467 Feb 25 20:51 setup.sh.local
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas    987490 Feb 25 20:51 agis_schedconf.cvmfs.json
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas   1573632 Feb 25 20:51 agis_ddmendpoints.agis.ALL.json
[2025-02-25 22:13:10] drwx------ 4 boincer umatlas      4096 Feb 25 20:51 pilot3
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas        95 Feb 25 22:12 pilot_heartbeat.json
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas 188167309 Feb 25 22:12 HITS.43401155._000311.pool.root.1
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas      6387 Feb 25 22:12 init_data.xml
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas       529 Feb 25 22:12 boinc_task_state.xml
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas      1077 Feb 25 22:12 memory_monitor_summary.json
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas    307118 Feb 25 22:12 log.43401155._000311.job.log.tgz.1
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas      7733 Feb 25 22:12 heartbeat.json
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 22:13 boinc_mmap_file
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas        27 Feb 25 22:13 wrapper_checkpoint.txt
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas      4288 Feb 25 22:13 pilotlog.txt
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas    479105 Feb 25 22:13 log.43401155._000311.job.log.1
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas       357 Feb 25 22:13 output.list
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas       620 Feb 25 22:13 runtime_log
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas    808960 Feb 25 22:13 result.tar.gz
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas     11413 Feb 25 22:13 runtime_log.err
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas       655 Feb 25 22:13 qjzLDmMVI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmODxKDmh8Q0Wo.diag
[2025-02-25 22:13:10] -rw-r--r-- 1 boincer umatlas     21308 Feb 25 22:13 stderr.txt
[2025-02-25 22:13:10] HITS file was successfully produced:
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas 188167309 Feb 25 22:12 shared/HITS.pool.root.1
[2025-02-25 22:13:10]  *** Contents of shared directory: ***
[2025-02-25 22:13:10] total 430648
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas 251470990 Feb 25 20:51 ATLAS.root_0
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:51 start_atlas.sh
[2025-02-25 22:13:10] -rw-r--r-- 2 boincer umatlas    503546 Feb 25 20:51 input.tar.gz
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas 188167309 Feb 25 22:12 HITS.pool.root.1
[2025-02-25 22:13:10] -rw------- 1 boincer umatlas    808960 Feb 25 22:13 result.tar.gz
22:13:12 (2587): run_atlas exited; CPU time 30642.584284
22:13:12 (2587): called boinc_finish(0)

</stderr_txt>
]]>

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