Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:42:16 (94584): wrapper (7.7.26015): starting
20:42:16 (94584): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 20:42:16] Arguments: --nthreads 8
[2025-02-25 20:42:16] Threads: 8
[2025-02-25 20:42:16] Checking for CVMFS
[2025-02-25 20:42:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 20:42:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 20:42:16] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 20:42:16] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 20:42:16] 
[2025-02-25 20:42:16] CVMFS is ok
[2025-02-25 20:42:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 20:42:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 20:42:16] Further information can be found at the LHC@home message board.
[2025-02-25 20:42:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 20:42:16] Checking for apptainer binary...
[2025-02-25 20:42:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 20:42:16] Running /usr/bin/apptainer --version
[2025-02-25 20:42:16] apptainer version 1.3.2-1.el7
[2025-02-25 20:42:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 20:42:17] c-212-5.aglt2.org
[2025-02-25 20:42:17] apptainer works
[2025-02-25 20:42:17] Set ATHENA_PROC_NUMBER=8
[2025-02-25 20:42:17] Set ATHENA_CORE_NUMBER=8
[2025-02-25 20:42:17] Starting ATLAS job with PandaID=6531137099
[2025-02-25 20:42:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 22:06:03]  *** The last 200 lines of the pilot log: ***
[2025-02-25 22:06:03]  mtime=0
[2025-02-25 22:06:03]  protocol_id=None
[2025-02-25 22:06:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 22:06:03]  replicas=None
[2025-02-25 22:06:03]  scope=mc23_13p6TeV
[2025-02-25 22:06:03]  status=None
[2025-02-25 22:06:03]  status_code=0
[2025-02-25 22:06:03]  storage_token=
[2025-02-25 22:06:03]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6531137099/log.43401163._002146.job.log.tgz.1
[2025-02-25 22:06:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/a4/log.43401163._002146.job.log.tgz.1
[2025-02-25 22:06:03]  workdir=None
[2025-02-25 22:06:03] ]
[2025-02-25 22:06:03] 2025-02-26 03:05:37,179 | INFO     | transferring file log.43401163._002146.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6531137099/log.43401163._002146.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 22:06:03] 2025-02-26 03:05:37,179 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6531137099/log.43401163._002146.job.log.tgz.1 /tmp/boinchome/slots/2/log.43401163._002146.job
[2025-02-25 22:06:03] 2025-02-26 03:05:37,196 | INFO     | adding to output.list: log.43401163._002146.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/03/a4/log.43401163._002146.job.log.tg
[2025-02-25 22:06:03] 2025-02-26 03:05:37,197 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 22:06:03] 2025-02-26 03:05:37,197 | INFO     | summary of transferred files:
[2025-02-25 22:06:03] 2025-02-26 03:05:37,197 | INFO     |  -- lfn=log.43401163._002146.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 22:06:03] 2025-02-26 03:05:37,197 | INFO     | stage-out finished correctly
[2025-02-25 22:06:03] 2025-02-26 03:05:38,369 | INFO     | PID=2055 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-02-25 22:06:03] 2025-02-26 03:05:38,369 | INFO     | .. there are 40 such processes running
[2025-02-25 22:06:03] 2025-02-26 03:05:39,595 | INFO     | monitor loop #370: job 0:6531137099 is in state 'finished'
[2025-02-25 22:06:03] 2025-02-26 03:05:39,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:06:03] 2025-02-26 03:05:39,628 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 22:06:03] 2025-02-26 03:05:41,883 | INFO     | job 6531137099 has state=finished
[2025-02-25 22:06:03] 2025-02-26 03:05:41,883 | INFO     | preparing for final server update for job 6531137099 in state='finished'
[2025-02-25 22:06:03] 2025-02-26 03:05:41,884 | INFO     | this job has now completed (state=finished)
[2025-02-25 22:06:03] 2025-02-26 03:05:41,884 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 22:06:03] 2025-02-26 03:05:41,884 | INFO     | log transfer has been attempted: DONE
[2025-02-25 22:06:03] 2025-02-26 03:05:41,884 | INFO     | job 6531137099 has finished - writing final server update
[2025-02-25 22:06:03] 2025-02-26 03:05:41,884 | INFO     | total number of processed events: 400 (read)
[2025-02-25 22:06:03] 2025-02-26 03:05:41,888 | INFO     | executing command: lscpu
[2025-02-25 22:06:03] 2025-02-26 03:05:41,914 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 22:06:03] 2025-02-26 03:05:41,927 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 22:06:03] 2025-02-26 03:05:42,098 | INFO     | monitor loop #371: job 0:6531137099 is in state 'finished'
[2025-02-25 22:06:03] 2025-02-26 03:05:42,099 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,602 | INFO     | monitor loop #372: job 0:6531137099 is in state 'finished'
[2025-02-25 22:06:03] 2025-02-26 03:05:44,602 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,635 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-25 22:06:03] 2025-02-26 03:05:44,636 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6531137099/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,636 | INFO     | extracted standard info from prmon json
[2025-02-25 22:06:03] 2025-02-26 03:05:44,636 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 22:06:03] 2025-02-26 03:05:44,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 22:06:03] 2025-02-26 03:05:44,636 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 22:06:03] 2025-02-26 03:05:44,637 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 22:06:03] 2025-02-26 03:05:44,637 | INFO     | fitting pss+swap vs Time
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | model: linear, x: [1740534485.0, 1740534546.0, 1740534607.0, 1740534668.0, 1740534729.0, 1740534790.0, 1740534851.0, 1740534912.0, 1740534973.0, 1740535034.0, 1740
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | sum of square deviations: 130793150.0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | sum of deviations: 24423633047.0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | mean x: 1740536742.0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | mean y: 2353187.04
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | -- intersect: -325016431752.60645
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | intersect: -325016431752.60645
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | chi2: 2.6230065247278476
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | -- intersect: -325016431752.60645
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | current memory leak: 186.73 B/s (using 75 data points, chi2=2.62)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | ..............................
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | . Timing measurements:
[2025-02-25 22:06:03] 2025-02-26 03:05:44,638 | INFO     | . get job = 0 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . initial setup = 2 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . payload setup = 7 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . stage-in = 0 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . payload execution = 4957 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . stage-out = 0 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | . log creation = 0 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,639 | INFO     | ..............................
[2025-02-25 22:06:03] 2025-02-26 03:05:44,696 | INFO     | 
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | job summary report
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | --------------------------------------------------
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | PanDA job id: 6531137099
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | task id: 43401163
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | errors: (none)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | pilot state: finished 
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | transexitcode: 0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | exeerrorcode: 0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | exeerrordiag: 
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | exitcode: 0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | exitmsg: OK
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | cpuconsumptiontime: 30695 s
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | nevents: 400
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | neventsw: 0
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | pid: 16655
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | pgrp: 16655
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | corecount: 8
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | event service: False
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | sizes: {0: 2370383, 5: 2370589, 11: 2370645, 4969: 2396853, 4971: 2405822, 4974: 2405878, 4979: 2406176}
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | --------------------------------------------------
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | 
[2025-02-25 22:06:03] 2025-02-26 03:05:44,697 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,714 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | job 6531137099 has completed (purged errors)
[2025-02-25 22:06:03] 2025-02-26 03:05:44,715 | INFO     | overall cleanup function is called
[2025-02-25 22:06:03] 2025-02-26 03:05:45,722 | INFO     | --- collectZombieJob: --- 10, [16655]
[2025-02-25 22:06:03] 2025-02-26 03:05:45,722 | INFO     | zombie collector waiting for pid 16655
[2025-02-25 22:06:03] 2025-02-26 03:05:45,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 22:06:03] 2025-02-26 03:05:45,722 | INFO     | collected zombie processes
[2025-02-25 22:06:03] 2025-02-26 03:05:45,722 | INFO     | will attempt to kill all subprocesses of pid=16655
[2025-02-25 22:06:03] 2025-02-26 03:05:45,940 | INFO     | process IDs to be killed: [16655] (in reverse order)
[2025-02-25 22:06:03] 2025-02-26 03:05:46,057 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 22:06:03] 2025-02-26 03:05:46,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 22:06:03] 2025-02-26 03:05:46,067 | INFO     | did not find any defunct processes belonging to 16655
[2025-02-25 22:06:03] 2025-02-26 03:05:46,076 | INFO     | did not find any defunct processes belonging to 16655
[2025-02-25 22:06:03] 2025-02-26 03:05:46,076 | INFO     | ready for new job
[2025-02-25 22:06:03] 2025-02-26 03:05:46,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 22:06:03] 2025-02-26 03:05:46,078 | INFO     | **************************************
[2025-02-25 22:06:03] 2025-02-26 03:05:46,078 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 22:06:03] 2025-02-26 03:05:46,078 | INFO     | **************************************
[2025-02-25 22:06:03] 2025-02-26 03:05:46,078 | INFO     | 
[2025-02-25 22:06:03] 2025-02-26 03:05:46,080 | INFO     | architecture information:
[2025-02-25 22:06:03] 2025-02-26 03:05:46,081 | INFO     | executing command: cat /etc/os-release
[2025-02-25 22:06:03] 2025-02-26 03:05:46,093 | INFO     | cat /etc/os-release:
[2025-02-25 22:06:03] NAME="CentOS Linux"
[2025-02-25 22:06:03] VERSION="7 (Core)"
[2025-02-25 22:06:03] ID="centos"
[2025-02-25 22:06:03] ID_LIKE="rhel fedora"
[2025-02-25 22:06:03] VERSION_ID="7"
[2025-02-25 22:06:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 22:06:03] ANSI_COLOR="0;31"
[2025-02-25 22:06:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 22:06:03] HOME_URL="https://www.centos.org/"
[2025-02-25 22:06:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 22:06:03] 
[2025-02-25 22:06:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 22:06:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 22:06:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 22:06:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 22:06:03] 
[2025-02-25 22:06:03] 2025-02-26 03:05:46,093 | INFO     | **************************************
[2025-02-25 22:06:03] 2025-02-26 03:05:46,596 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-02-25 22:06:03] 2025-02-26 03:05:46,631 | INFO     | sufficient remaining disk space (103263764480 B)
[2025-02-25 22:06:03] 2025-02-26 03:05:46,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 22:06:03] 2025-02-26 03:05:46,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 22:06:03] 2025-02-26 03:05:46,632 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:06:03] 2025-02-26 03:05:46,632 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 22:06:03] 2025-02-26 03:05:46,632 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 22:06:03] 2025-02-26 03:05:46,633 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 22:06:03] 2025-02-26 03:05:46,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 22:06:03] 2025-02-26 03:05:46,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 22:06:03] 2025-02-26 03:05:47,105 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-25 22:06:03] 2025-02-26 03:05:47,105 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-25 22:06:03] 2025-02-26 03:05:47,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 22:06:03] 2025-02-26 03:05:47,105 | INFO     | will abort loop
[2025-02-25 22:06:03] 2025-02-26 03:05:47,312 | INFO     | all job control threads have been joined
[2025-02-25 22:06:03] 2025-02-26 03:05:47,415 | INFO     | all payload control threads have been joined
[2025-02-25 22:06:03] 2025-02-26 03:05:47,518 | INFO     | all data control threads have been joined
[2025-02-25 22:06:03] 2025-02-26 03:05:47,635 | INFO     | [job] retrieve thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:47,637 | INFO     | [job] queue monitor thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:47,747 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 22:06:03] 2025-02-26 03:05:47,992 | INFO     | [payload] failed_post thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,111 | INFO     | [job] job monitor thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,142 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,317 | INFO     | [job] control thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,421 | INFO     | [payload] control thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,523 | INFO     | [data] control thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,621 | INFO     | [job] validate thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,729 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,767 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:48,895 | INFO     | [data] copytool_in thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:49,015 | INFO     | [payload] validate_post thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:49,752 | INFO     | [data] copytool_out thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:50,638 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:56,929 | INFO     | job.realtimelogging is not enabled
[2025-02-25 22:06:03] 2025-02-26 03:05:57,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 22:06:03] 2025-02-26 03:05:57,971 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140656586909504)>', '<ExcThread(monitor, started 140655984621312)>']
[2025-02-25 22:06:03] 2025-02-26 03:05:58,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 22:06:03] 2025-02-26 03:05:58,689 | INFO     | [monitor] control thread has ended
[2025-02-25 22:06:03] 2025-02-26 03:06:02,997 | INFO     | all workflow threads have been joined
[2025-02-25 22:06:03] 2025-02-26 03:06:02,997 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 22:06:03] 2025-02-26 03:06:02,997 | INFO     | traces error code: 0
[2025-02-25 22:06:03] 2025-02-26 03:06:02,997 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 22:06:03] 2025-02-26 03:06:03,152 [wrapper] ==== pilot stdout END ====
[2025-02-25 22:06:03] 2025-02-26 03:06:03,154 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 22:06:03] 2025-02-26 03:06:03,155 [wrapper] pilotpid: 2055
[2025-02-25 22:06:03] 2025-02-26 03:06:03,157 [wrapper] Pilot exit status: 0
[2025-02-25 22:06:03] 2025-02-26 03:06:03,163 [wrapper] pandaids: 6531137099
[2025-02-25 22:06:03] 2025-02-26 03:06:03,241 [wrapper] cleanup supervisor_pilot 95894 2056
[2025-02-25 22:06:03] 2025-02-26 03:06:03,243 [wrapper] Test setup, not cleaning
[2025-02-25 22:06:03] 2025-02-26 03:06:03,246 [wrapper] apfmon messages muted
[2025-02-25 22:06:03] 2025-02-26 03:06:03,247 [wrapper] ==== wrapper stdout END ====
[2025-02-25 22:06:03] 2025-02-26 03:06:03,249 [wrapper] ==== wrapper stderr END ====
[2025-02-25 22:06:03]  *** Error codes and diagnostics ***
[2025-02-25 22:06:03]     "exeErrorCode": 0,
[2025-02-25 22:06:03]     "exeErrorDiag": "",
[2025-02-25 22:06:03]     "pilotErrorCode": 0,
[2025-02-25 22:06:03]     "pilotErrorDiag": "",
[2025-02-25 22:06:03]  *** Listing of results directory ***
[2025-02-25 22:06:03] total 428024
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 18:33 queuedata.json
[2025-02-25 22:06:03] -rwx------ 1 boincer umatlas     35865 Feb 25 18:33 runpilot2-wrapper.sh
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 18:33 pilot3.tar.gz
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas       100 Feb 25 20:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 22:06:03] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 20:42 run_atlas
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas       105 Feb 25 20:42 job.xml
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:42 start_atlas.sh
[2025-02-25 22:06:03] drwxrwx--x 2 boincer umatlas      4096 Feb 25 20:42 shared
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas    503549 Feb 25 20:42 input.tar.gz
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas 250748956 Feb 25 20:42 EVNT.43401161._000084.pool.root.1
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas         0 Feb 25 20:42 boinc_lockfile
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas      2541 Feb 25 20:42 pandaJob.out
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas       467 Feb 25 20:42 setup.sh.local
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas    987490 Feb 25 20:42 agis_schedconf.cvmfs.json
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas   1573632 Feb 25 20:42 agis_ddmendpoints.agis.ALL.json
[2025-02-25 22:06:03] drwx------ 4 boincer umatlas      4096 Feb 25 20:42 pilot3
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas      6387 Feb 25 22:04 init_data.xml
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas        95 Feb 25 22:05 pilot_heartbeat.json
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas 182122775 Feb 25 22:05 HITS.43401163._002146.pool.root.1
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas       530 Feb 25 22:05 boinc_task_state.xml
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas      1080 Feb 25 22:05 memory_monitor_summary.json
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas    325077 Feb 25 22:05 log.43401163._002146.job.log.tgz.1
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas      7745 Feb 25 22:05 heartbeat.json
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 22:05 boinc_mmap_file
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas        27 Feb 25 22:05 wrapper_checkpoint.txt
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas      4597 Feb 25 22:06 pilotlog.txt
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas    489115 Feb 25 22:06 log.43401163._002146.job.log.1
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas       357 Feb 25 22:06 output.list
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas       620 Feb 25 22:06 runtime_log
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas    829440 Feb 25 22:06 result.tar.gz
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas       658 Feb 25 22:06 wAJNDmlbJ76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmYjgKDmEuk5fn.diag
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas     11413 Feb 25 22:06 runtime_log.err
[2025-02-25 22:06:03] -rw-r--r-- 1 boincer umatlas     21536 Feb 25 22:06 stderr.txt
[2025-02-25 22:06:03] HITS file was successfully produced:
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas 182122775 Feb 25 22:05 shared/HITS.pool.root.1
[2025-02-25 22:06:03]  *** Contents of shared directory: ***
[2025-02-25 22:06:03] total 424060
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:42 start_atlas.sh
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas    503549 Feb 25 20:42 input.tar.gz
[2025-02-25 22:06:03] -rw-r--r-- 2 boincer umatlas 250748956 Feb 25 20:42 ATLAS.root_0
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas 182122775 Feb 25 22:05 HITS.pool.root.1
[2025-02-25 22:06:03] -rw------- 1 boincer umatlas    829440 Feb 25 22:06 result.tar.gz
22:06:04 (94584): run_atlas exited; CPU time 30481.351441
22:06:04 (94584): called boinc_finish(0)

</stderr_txt>
]]>

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