Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:11:29 (84177): wrapper (7.7.26015): starting
20:11:29 (84177): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 20:11:29] Arguments: --nthreads 8
[2025-02-25 20:11:29] Threads: 8
[2025-02-25 20:11:29] Checking for CVMFS
[2025-02-25 20:11:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 20:11:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 20:11:29] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 20:11:30] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 20:11:30] 
[2025-02-25 20:11:30] CVMFS is ok
[2025-02-25 20:11:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 20:11:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 20:11:30] Further information can be found at the LHC@home message board.
[2025-02-25 20:11:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 20:11:30] Checking for apptainer binary...
[2025-02-25 20:11:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 20:11:30] Running /usr/bin/apptainer --version
[2025-02-25 20:11:30] apptainer version 1.3.2-1.el7
[2025-02-25 20:11:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 20:11:31] c-212-18.aglt2.org
[2025-02-25 20:11:31] apptainer works
[2025-02-25 20:11:31] Set ATHENA_PROC_NUMBER=8
[2025-02-25 20:11:31] Set ATHENA_CORE_NUMBER=8
[2025-02-25 20:11:31] Starting ATLAS job with PandaID=6531059577
[2025-02-25 20:11:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 20:15:55]  *** The last 200 lines of the pilot log: ***
[2025-02-25 20:15:55] 2025-02-26 01:14:11,935 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:14,438 | INFO     | monitor loop #26: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:14,439 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:16,942 | INFO     | monitor loop #27: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:16,942 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:19,447 | INFO     | monitor loop #28: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:19,447 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:21,949 | INFO     | monitor loop #29: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:21,950 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:24,452 | INFO     | monitor loop #30: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:24,453 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:26,958 | INFO     | monitor loop #31: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:26,958 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:29,460 | INFO     | monitor loop #32: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:29,461 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:31,927 | INFO     | PID=14585 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 20:15:55] 2025-02-26 01:14:31,927 | INFO     | .. there are 46 such processes running
[2025-02-25 20:15:55] 2025-02-26 01:14:31,963 | INFO     | monitor loop #33: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:31,964 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:34,466 | INFO     | monitor loop #34: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:34,467 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:36,969 | INFO     | monitor loop #35: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:36,970 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:39,472 | INFO     | monitor loop #36: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:39,473 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:41,975 | INFO     | monitor loop #37: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:41,976 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:44,478 | INFO     | monitor loop #38: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:44,479 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:46,981 | INFO     | monitor loop #39: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:46,982 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:49,486 | INFO     | monitor loop #40: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:49,486 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:51,988 | INFO     | monitor loop #41: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:51,989 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:54,289 | INFO     | PID=14585 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 20:15:55] 2025-02-26 01:14:54,289 | INFO     | .. there are 48 such processes running
[2025-02-25 20:15:55] 2025-02-26 01:14:54,492 | INFO     | monitor loop #42: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:54,492 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:56,995 | INFO     | monitor loop #43: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:56,995 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:14:59,498 | INFO     | monitor loop #44: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:14:59,498 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:02,000 | INFO     | monitor loop #45: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:02,001 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:04,504 | INFO     | monitor loop #46: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:04,504 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:07,007 | INFO     | monitor loop #47: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:07,007 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:09,509 | INFO     | monitor loop #48: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:09,510 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:12,012 | INFO     | monitor loop #49: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:12,013 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:14,515 | INFO     | monitor loop #50: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:14,516 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:16,671 | INFO     | PID=14585 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 20:15:55] 2025-02-26 01:15:16,671 | INFO     | .. there are 50 such processes running
[2025-02-25 20:15:55] 2025-02-26 01:15:17,018 | INFO     | monitor loop #51: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:17,019 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:19,521 | INFO     | monitor loop #52: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:19,521 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:22,024 | INFO     | monitor loop #53: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:22,024 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:24,527 | INFO     | monitor loop #54: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:24,527 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:27,029 | INFO     | monitor loop #55: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:27,030 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:29,532 | INFO     | monitor loop #56: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:29,533 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:32,035 | INFO     | monitor loop #57: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:32,036 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:34,038 | INFO     | proceeding with final server update
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | INFO     | this job has now completed (state=failed)
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | INFO     | log transfer has been attempted: DONE
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | INFO     | job 6531059577 has failed - writing final server update
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2025-02-25 20:15:55] 2025-02-26 01:15:34,039 | INFO     | payload/TRF did not report the number of read events
[2025-02-25 20:15:55] 2025-02-26 01:15:34,042 | INFO     | executing command: lscpu
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:15:55]     self._target(**self.kwargs)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:15:55]     update_server(job, args)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:15:55]     send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:15:55]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2025-02-25 20:15:55]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2025-02-25 20:15:55]     ec, stdout = lscpu()
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2025-02-25 20:15:55]     ec, stdout, _ = execute(cmd)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:15:55]     process = subprocess.Popen(
[2025-02-25 20:15:55]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:15:55]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-02-25 20:15:55]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:15:55]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-02-25 20:15:55] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f46940bb180>)
[2025-02-25 20:15:55] Traceback (most recent call last):
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:15:55]     self._target(**self.kwargs)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:15:55]     update_server(job, args)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:15:55]     send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:15:55]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 757, in get_data_structure
[2025-02-25 20:15:55]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2025-02-25 20:15:55]     ec, stdout = lscpu()
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2025-02-25 20:15:55]     ec, stdout, _ = execute(cmd)
[2025-02-25 20:15:55]   File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:15:55]     process = subprocess.Popen(
[2025-02-25 20:15:55]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:15:55]     self._execute_child(args, executable, preexec_fn, close_fds,
[2025-02-25 20:15:55]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:15:55]     raise child_exception_type(errno_num, err_msg, err_filename)
[2025-02-25 20:15:55] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:15:55] 
[2025-02-25 20:15:55] None
[2025-02-25 20:15:55] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-02-25 20:15:55] setting graceful stop in 10 s since there is no point in continuing
[2025-02-25 20:15:55] 2025-02-26 01:15:34,538 | INFO     | monitor loop #58: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:34,539 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:35,386 | WARNING  | thread 'queue_monitor' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:15:55] 2025-02-26 01:15:37,041 | INFO     | monitor loop #59: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:37,042 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:38,978 | INFO     | PID=14585 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 20:15:55] 2025-02-26 01:15:38,978 | INFO     | .. there are 50 such processes running
[2025-02-25 20:15:55] 2025-02-26 01:15:39,543 | INFO     | monitor loop #60: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:39,543 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:42,046 | INFO     | monitor loop #61: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:42,046 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:44,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 20:15:55] 2025-02-26 01:15:44,302 | INFO     | all data control threads have been joined
[2025-02-25 20:15:55] 2025-02-26 01:15:44,549 | INFO     | monitor loop #62: job 0:6531059577 is in state 'failed'
[2025-02-25 20:15:55] 2025-02-26 01:15:44,549 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:15:55] 2025-02-26 01:15:44,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 20:15:55] 2025-02-26 01:15:44,549 | INFO     | will abort loop
[2025-02-25 20:15:55] 2025-02-26 01:15:44,909 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 20:15:55] 2025-02-26 01:15:44,992 | INFO     | found 1 job(s) in 20 queues
[2025-02-25 20:15:55] 2025-02-26 01:15:44,993 | INFO     | aborting job 6531059577
[2025-02-25 20:15:55] 2025-02-26 01:15:44,993 | WARNING  | could not find signal name for signal number None - using SIGTERM
[2025-02-25 20:15:55] 2025-02-26 01:15:45,021 | INFO     | all job control threads have been joined
[2025-02-25 20:15:55] 2025-02-26 01:15:45,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 20:15:55] 2025-02-26 01:15:45,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 20:15:55] 2025-02-26 01:15:45,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 20:15:55] 2025-02-26 01:15:45,032 | INFO     | [monitor] control thread has ended
[2025-02-25 20:15:55] 2025-02-26 01:15:45,059 | INFO     | all payload control threads have been joined
[2025-02-25 20:15:55] 2025-02-26 01:15:45,308 | INFO     | [data] control thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:45,363 | INFO     | [payload] failed_post thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:45,554 | INFO     | [job] job monitor thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:45,916 | INFO     | [data] copytool_in thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:45,963 | INFO     | [job] retrieve thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,035 | INFO     | [job] control thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,039 | INFO     | [job] validate thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,064 | INFO     | [payload] control thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,077 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,195 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,223 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,288 | INFO     | [payload] validate_post thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,388 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:46,915 | INFO     | [data] copytool_out thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:47,068 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139941430814528)>', '<ExcThread(queue_monitoring, started 139940159547136)>']
[2025-02-25 20:15:55] 2025-02-26 01:15:48,101 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139941430814528)>', '<ExcThread(queue_monitoring, started 139940159547136)>']
[2025-02-25 20:15:55] 2025-02-26 01:15:48,102 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 20:15:55] 2025-02-26 01:15:49,078 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139941430814528)>'])
[2025-02-25 20:15:55] 2025-02-26 01:15:54,102 | INFO     | all workflow threads have been joined
[2025-02-25 20:15:55] 2025-02-26 01:15:54,103 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 20:15:55] 2025-02-26 01:15:54,103 | INFO     | traces error code: 0
[2025-02-25 20:15:55] 2025-02-26 01:15:54,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  ==== pilot stdout END ====
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  ==== wrapper stdout RESUME ====
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  pilotpid: 14585
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  Pilot exit status: 0
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cat: Transport endpoint is not connected
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 1015: xargs: command not found
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  pandaids: 
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 516: /usr/bin/ps: Transport endpoint is not connected
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  No supervise_pilot CHILD process found
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  Test setup, not cleaning
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 534: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  apfmon messages muted
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  ==== wrapper stdout END ====
[2025-02-25 20:15:55] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:15:55]  ==== wrapper stderr END ====
[2025-02-25 20:15:55]  *** Error codes and diagnostics ***
[2025-02-25 20:15:55]  *** Listing of results directory ***
[2025-02-25 20:15:55] total 249884
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 17:04 pilot3.tar.gz
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 17:21 queuedata.json
[2025-02-25 20:15:55] -rwx------ 1 boincer umatlas     35865 Feb 25 17:22 runpilot2-wrapper.sh
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas       100 Feb 25 20:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 20:15:55] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 20:11 run_atlas
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas       105 Feb 25 20:11 job.xml
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas 251933827 Feb 25 20:11 EVNT.43401153._000019.pool.root.1
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:11 start_atlas.sh
[2025-02-25 20:15:55] drwxrwx--x 2 boincer umatlas      4096 Feb 25 20:11 shared
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas    503545 Feb 25 20:11 input.tar.gz
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas      6293 Feb 25 20:11 init_data.xml
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas         0 Feb 25 20:11 boinc_lockfile
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas      2537 Feb 25 20:11 pandaJob.out
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas       424 Feb 25 20:11 setup.sh.local
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas    987490 Feb 25 20:11 agis_schedconf.cvmfs.json
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas   1573632 Feb 25 20:11 agis_ddmendpoints.agis.ALL.json
[2025-02-25 20:15:55] drwx------ 4 boincer umatlas      4096 Feb 25 20:11 pilot3
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas       547 Feb 25 20:12 heartbeat.json
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas       524 Feb 25 20:13 boinc_task_state.xml
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas      1017 Feb 25 20:13 memory_monitor_summary.json
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas     40571 Feb 25 20:13 log.43401155._000475.job.log.tgz.1
[2025-02-25 20:15:55] drwxrwx--- 2 boincer umatlas      4096 Feb 25 20:13 PanDA_Pilot-6531059577
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas       188 Feb 25 20:13 output.list
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas        95 Feb 25 20:14 pilot_heartbeat.json
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 20:15 boinc_mmap_file
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas        23 Feb 25 20:15 wrapper_checkpoint.txt
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas     57625 Feb 25 20:15 pilotlog.txt
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas     79083 Feb 25 20:15 log.43401155._000475.job.log.1
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas       428 Feb 25 20:15 runtime_log
[2025-02-25 20:15:55] -rw------- 1 boincer umatlas       626 Feb 25 20:15 J4ZMDmQVI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmsExKDmqcbbkm.diag
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas     11585 Feb 25 20:15 runtime_log.err
[2025-02-25 20:15:55] -rw-r--r-- 1 boincer umatlas     24253 Feb 25 20:15 stderr.txt
[2025-02-25 20:15:55] No HITS result produced
[2025-02-25 20:15:55]  *** Contents of shared directory: ***
[2025-02-25 20:15:55] total 246544
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas 251933827 Feb 25 20:11 ATLAS.root_0
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 20:11 start_atlas.sh
[2025-02-25 20:15:55] -rw-r--r-- 2 boincer umatlas    503545 Feb 25 20:11 input.tar.gz
20:15:57 (84177): run_atlas exited; CPU time 38.160736
20:15:57 (84177): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>J4ZMDmQVI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmsExKDmqcbbkm_1_r681870069_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>

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