Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:14:05 (2611001): wrapper (7.7.26015): starting
16:14:05 (2611001): wrapper: running run_atlas (--nthreads 12)
[2025-02-26 16:14:06] Arguments: --nthreads 12
[2025-02-26 16:14:06] Threads: 12
[2025-02-26 16:14:06] Checking for CVMFS
[2025-02-26 16:14:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-26 16:14:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-26 16:14:06] Running cvmfs_config stat atlas.cern.ch
[2025-02-26 16:14:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-26 16:14:06] 2.12.6.0 4287 1812 79468 143077 3 187 40777622 46080000 921 130560 0 5307052 99.997 434894 14062 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-02-26 16:14:06] CVMFS is ok
[2025-02-26 16:14:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-26 16:14:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-26 16:14:06] Further information can be found at the LHC@home message board.
[2025-02-26 16:14:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 16:14:06] Checking for apptainer binary...
[2025-02-26 16:14:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-26 16:14:06] Running /usr/bin/apptainer --version
[2025-02-26 16:14:06] apptainer version 1.3.6-1.el9
[2025-02-26 16:14:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 16:14:06] gpu01.farm.particle.cz
[2025-02-26 16:14:06] apptainer works
[2025-02-26 16:14:06] Set ATHENA_PROC_NUMBER=12
[2025-02-26 16:14:06] Set ATHENA_CORE_NUMBER=12
[2025-02-26 16:14:06] Starting ATLAS job with PandaID=6531079631
[2025-02-26 16:14:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 16:58:05]  *** The last 200 lines of the pilot log: ***
[2025-02-26 16:58:05]  is_altstaged=None
[2025-02-26 16:58:05]  is_tar=False
[2025-02-26 16:58:05]  lfn=log.43401171._002178.job.log.tgz.1
[2025-02-26 16:58:05]  mtime=0
[2025-02-26 16:58:05]  protocol_id=None
[2025-02-26 16:58:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-26 16:58:05]  replicas=None
[2025-02-26 16:58:05]  scope=mc23_13p6TeV
[2025-02-26 16:58:05]  status=None
[2025-02-26 16:58:05]  status_code=0
[2025-02-26 16:58:05]  storage_token=
[2025-02-26 16:58:05]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-6531079631/log.43401171._002178.job.log.tgz.1
[2025-02-26 16:58:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/a5/log.43401171._002178.job.log.tgz.1
[2025-02-26 16:58:05]  workdir=None
[2025-02-26 16:58:05] ]
[2025-02-26 16:58:05] 2025-02-26 15:57:40,157 | INFO     | transferring file log.43401171._002178.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-6531079631/log.43401171._002178.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-02-26 16:58:05] 2025-02-26 15:57:40,158 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-6531079631/log.43401171._002178.job.log.tgz.1 /var/lib/boinc/slots/1/log.43401171._002178.job
[2025-02-26 16:58:05] 2025-02-26 15:57:40,170 | INFO     | adding to output.list: log.43401171._002178.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/a5/log.43401171._002178.job.log.tg
[2025-02-26 16:58:05] 2025-02-26 15:57:40,171 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-26 16:58:05] 2025-02-26 15:57:40,171 | INFO     | summary of transferred files:
[2025-02-26 16:58:05] 2025-02-26 15:57:40,171 | INFO     |  -- lfn=log.43401171._002178.job.log.tgz.1, status_code=0, status=transferred
[2025-02-26 16:58:05] 2025-02-26 15:57:40,171 | INFO     | stage-out finished correctly
[2025-02-26 16:58:05] 2025-02-26 15:57:40,254 | INFO     | monitor loop #203: job 0:6531079631 is in state 'finished'
[2025-02-26 16:58:05] 2025-02-26 15:57:40,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 16:58:05] 2025-02-26 15:57:42,712 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-26 16:58:05] 2025-02-26 15:57:42,759 | INFO     | monitor loop #204: job 0:6531079631 is in state 'finished'
[2025-02-26 16:58:05] 2025-02-26 15:57:42,761 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 16:58:05] 2025-02-26 15:57:43,229 | INFO     | job 6531079631 has state=finished
[2025-02-26 16:58:05] 2025-02-26 15:57:43,229 | INFO     | preparing for final server update for job 6531079631 in state='finished'
[2025-02-26 16:58:05] 2025-02-26 15:57:43,230 | INFO     | this job has now completed (state=finished)
[2025-02-26 16:58:05] 2025-02-26 15:57:43,230 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-26 16:58:05] 2025-02-26 15:57:43,230 | INFO     | log transfer has been attempted: DONE
[2025-02-26 16:58:05] 2025-02-26 15:57:43,230 | INFO     | job 6531079631 has finished - writing final server update
[2025-02-26 16:58:05] 2025-02-26 15:57:43,230 | INFO     | total number of processed events: 400 (read)
[2025-02-26 16:58:05] 2025-02-26 15:57:43,233 | INFO     | executing command: lscpu
[2025-02-26 16:58:05] 2025-02-26 15:57:43,258 | INFO     | found 16 cores (16 cores per socket, 1 sockets)
[2025-02-26 16:58:05] 2025-02-26 15:57:43,272 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-26 16:58:05] 2025-02-26 15:57:45,264 | INFO     | monitor loop #205: job 0:6531079631 is in state 'finished'
[2025-02-26 16:58:05] 2025-02-26 15:57:45,264 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,533 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-26 16:58:05] 2025-02-26 15:57:45,533 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-6531079631/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,534 | INFO     | extracted standard info from prmon json
[2025-02-26 16:58:05] 2025-02-26 15:57:45,534 | INFO     | extracted standard memory fields from prmon json
[2025-02-26 16:58:05] 2025-02-26 15:57:45,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-26 16:58:05] 2025-02-26 15:57:45,535 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-26 16:58:05] 2025-02-26 15:57:45,535 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-26 16:58:05] 2025-02-26 15:57:45,536 | INFO     | fitting pss+swap vs Time
[2025-02-26 16:58:05] 2025-02-26 15:57:45,536 | INFO     | model: linear, x: [1740583179.0, 1740583240.0, 1740583301.0, 1740583362.0, 1740583423.0, 1740583484.0, 1740583545.0, 1740583606.0, 1740583667.0, 1740583728.0, 1740
[2025-02-26 16:58:05] 2025-02-26 15:57:45,536 | INFO     | sum of square deviations: 14456085.0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,536 | INFO     | sum of deviations: 9491519175.0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,536 | INFO     | mean x: 1740584246.5
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | mean y: 2674499.5555555555
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | -- intersect: -1142823253222.7617
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | intersect: -1142823253222.7617
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | chi2: 1.357190263360204
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | -- intersect: -1142823253222.7617
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | current memory leak: 656.58 B/s (using 36 data points, chi2=1.36)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | ..............................
[2025-02-26 16:58:05] 2025-02-26 15:57:45,537 | INFO     | . Timing measurements:
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . get job = 0 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . initial setup = 2 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . payload setup = 3 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . stage-in = 0 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . payload execution = 2585 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . stage-out = 0 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | . log creation = 0 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,538 | INFO     | ..............................
[2025-02-26 16:58:05] 2025-02-26 15:57:45,617 | INFO     | 
[2025-02-26 16:58:05] 2025-02-26 15:57:45,617 | INFO     | job summary report
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | --------------------------------------------------
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | PanDA job id: 6531079631
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | task id: 43401171
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | errors: (none)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | pilot state: finished 
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | transexitcode: 0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | exeerrorcode: 0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | exeerrordiag: 
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | exitcode: 0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | exitmsg: OK
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | cpuconsumptiontime: 22294 s
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | nevents: 400
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | neventsw: 0
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | pid: 2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | pgrp: 2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:45,618 | INFO     | corecount: 12
[2025-02-26 16:58:05] 2025-02-26 15:57:45,619 | INFO     | event service: False
[2025-02-26 16:58:05] 2025-02-26 15:57:45,619 | INFO     | sizes: {0: 2363589, 1: 2363844, 3: 2364050, 11: 2364078, 2592: 2389262, 2593: 2398203, 2596: 2398387, 2599: 2398557}
[2025-02-26 16:58:05] 2025-02-26 15:57:45,619 | INFO     | --------------------------------------------------
[2025-02-26 16:58:05] 2025-02-26 15:57:45,619 | INFO     | 
[2025-02-26 16:58:05] 2025-02-26 15:57:45,619 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-02-26 16:58:05] 2025-02-26 15:57:45,631 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,631 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,631 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,632 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | job 6531079631 has completed (purged errors)
[2025-02-26 16:58:05] 2025-02-26 15:57:45,633 | INFO     | overall cleanup function is called
[2025-02-26 16:58:05] 2025-02-26 15:57:46,641 | INFO     | --- collectZombieJob: --- 10, [2621504]
[2025-02-26 16:58:05] 2025-02-26 15:57:46,641 | INFO     | zombie collector waiting for pid 2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:46,641 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-26 16:58:05] 2025-02-26 15:57:46,641 | INFO     | collected zombie processes
[2025-02-26 16:58:05] 2025-02-26 15:57:46,641 | INFO     | will attempt to kill all subprocesses of pid=2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:46,696 | INFO     | process IDs to be killed: [2621504] (in reverse order)
[2025-02-26 16:58:05] 2025-02-26 15:57:46,734 | WARNING  | found no corresponding commands to process id(s)
[2025-02-26 16:58:05] 2025-02-26 15:57:46,734 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-26 16:58:05] 2025-02-26 15:57:46,738 | INFO     | did not find any defunct processes belonging to 2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:46,742 | INFO     | did not find any defunct processes belonging to 2621504
[2025-02-26 16:58:05] 2025-02-26 15:57:46,742 | INFO     | ready for new job
[2025-02-26 16:58:05] 2025-02-26 15:57:46,742 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-26 16:58:05] 2025-02-26 15:57:46,743 | INFO     | **************************************
[2025-02-26 16:58:05] 2025-02-26 15:57:46,743 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-26 16:58:05] 2025-02-26 15:57:46,743 | INFO     | **************************************
[2025-02-26 16:58:05] 2025-02-26 15:57:46,743 | INFO     | 
[2025-02-26 16:58:05] 2025-02-26 15:57:46,745 | INFO     | architecture information:
[2025-02-26 16:58:05] 2025-02-26 15:57:46,745 | INFO     | executing command: cat /etc/os-release
[2025-02-26 16:58:05] 2025-02-26 15:57:46,755 | INFO     | cat /etc/os-release:
[2025-02-26 16:58:05] NAME="CentOS Linux"
[2025-02-26 16:58:05] VERSION="7 (Core)"
[2025-02-26 16:58:05] ID="centos"
[2025-02-26 16:58:05] ID_LIKE="rhel fedora"
[2025-02-26 16:58:05] VERSION_ID="7"
[2025-02-26 16:58:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-26 16:58:05] ANSI_COLOR="0;31"
[2025-02-26 16:58:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-26 16:58:05] HOME_URL="https://www.centos.org/"
[2025-02-26 16:58:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-26 16:58:05] 
[2025-02-26 16:58:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-26 16:58:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-26 16:58:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-26 16:58:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-26 16:58:05] 
[2025-02-26 16:58:05] 2025-02-26 15:57:46,756 | INFO     | **************************************
[2025-02-26 16:58:05] 2025-02-26 15:57:47,258 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-02-26 16:58:05] 2025-02-26 15:57:47,271 | INFO     | sufficient remaining disk space (79768322048 B)
[2025-02-26 16:58:05] 2025-02-26 15:57:47,271 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-26 16:58:05] 2025-02-26 15:57:47,271 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-26 16:58:05] 2025-02-26 15:57:47,272 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-26 16:58:05] 2025-02-26 15:57:47,767 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-26 16:58:05] 2025-02-26 15:57:47,768 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-26 16:58:05] 2025-02-26 15:57:47,768 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-26 16:58:05] 2025-02-26 15:57:47,768 | INFO     | will abort loop
[2025-02-26 16:58:05] 2025-02-26 15:57:47,972 | INFO     | found 0 job(s) in 20 queues
[2025-02-26 16:58:05] 2025-02-26 15:57:47,972 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-26 16:58:05] 2025-02-26 15:57:47,972 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-26 16:58:05] 2025-02-26 15:57:48,032 | INFO     | all job control threads have been joined
[2025-02-26 16:58:05] 2025-02-26 15:57:48,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-26 16:58:05] 2025-02-26 15:57:48,277 | INFO     | [job] retrieve thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:48,277 | INFO     | [job] queue monitor thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:48,285 | INFO     | [payload] validate_post thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:48,309 | INFO     | all data control threads have been joined
[2025-02-26 16:58:05] 2025-02-26 15:57:48,409 | INFO     | all payload control threads have been joined
[2025-02-26 16:58:05] 2025-02-26 15:57:48,582 | INFO     | [payload] failed_post thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:48,766 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-26 16:58:05] 2025-02-26 15:57:48,773 | INFO     | [job] job monitor thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,038 | INFO     | [job] control thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,067 | INFO     | [job] validate thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,097 | INFO     | [data] copytool_in thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,173 | INFO     | [job] create_data_payload thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,239 | INFO     | [payload] execute_payloads thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,272 | INFO     | [payload] validate_pre thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,314 | INFO     | [data] control thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:49,414 | INFO     | [payload] control thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:50,240 | INFO     | [data] copytool_out thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:52,772 | INFO     | [data] queue_monitor thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:57,745 | INFO     | job.realtimelogging is not enabled
[2025-02-26 16:58:05] 2025-02-26 15:57:58,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-26 16:58:05] 2025-02-26 15:57:59,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403537442624)>', '<ExcThread(monitor, started 140403042920192)>']
[2025-02-26 16:58:05] 2025-02-26 15:58:00,029 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-26 16:58:05] 2025-02-26 15:58:00,030 | INFO     | [monitor] control thread has ended
[2025-02-26 16:58:05] 2025-02-26 15:58:04,876 | INFO     | all workflow threads have been joined
[2025-02-26 16:58:05] 2025-02-26 15:58:04,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-26 16:58:05] 2025-02-26 15:58:04,876 | INFO     | traces error code: 0
[2025-02-26 16:58:05] 2025-02-26 15:58:04,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-26 16:58:05] 2025-02-26 15:58:04,937 [wrapper] ==== pilot stdout END ====
[2025-02-26 16:58:05] 2025-02-26 15:58:04,939 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-26 16:58:05] 2025-02-26 15:58:04,941 [wrapper] pilotpid: 2614802
[2025-02-26 16:58:05] 2025-02-26 15:58:04,943 [wrapper] Pilot exit status: 0
[2025-02-26 16:58:05] 2025-02-26 15:58:04,950 [wrapper] pandaids: 6531079631
[2025-02-26 16:58:05] 2025-02-26 15:58:04,974 [wrapper] cleanup supervisor_pilot 2648294 2614803
[2025-02-26 16:58:05] 2025-02-26 15:58:04,976 [wrapper] Test setup, not cleaning
[2025-02-26 16:58:05] 2025-02-26 15:58:04,980 [wrapper] apfmon messages muted
[2025-02-26 16:58:05] 2025-02-26 15:58:04,982 [wrapper] ==== wrapper stdout END ====
[2025-02-26 16:58:05] 2025-02-26 15:58:04,983 [wrapper] ==== wrapper stderr END ====
[2025-02-26 16:58:05]  *** Error codes and diagnostics ***
[2025-02-26 16:58:05]     "exeErrorCode": 0,
[2025-02-26 16:58:05]     "exeErrorDiag": "",
[2025-02-26 16:58:05]     "pilotErrorCode": 0,
[2025-02-26 16:58:05]     "pilotErrorDiag": "",
[2025-02-26 16:58:05]  *** Listing of results directory ***
[2025-02-26 16:58:05] total 418920
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc    491065 Feb 25 23:35 pilot3.tar.gz
[2025-02-26 16:58:05] -rwx------ 1 boinc boinc     35865 Feb 25 23:38 runpilot2-wrapper.sh
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc      5118 Feb 25 23:38 queuedata.json
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc       100 Feb 26 16:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-26 16:58:05] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 16:14 run_atlas
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc       105 Feb 26 16:14 job.xml
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc 251307494 Feb 26 16:14 EVNT.43401169._000087.pool.root.1
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc     17569 Feb 26 16:14 start_atlas.sh
[2025-02-26 16:58:05] drwxrwx--x 2 boinc boinc      4096 Feb 26 16:14 shared
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc    503553 Feb 26 16:14 input.tar.gz
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc      6657 Feb 26 16:14 init_data.xml
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc         0 Feb 26 16:14 boinc_lockfile
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc      2542 Feb 26 16:14 pandaJob.out
[2025-02-26 16:58:05] -rw------- 1 boinc boinc       424 Feb 26 16:14 setup.sh.local
[2025-02-26 16:58:05] -rw------- 1 boinc boinc    990575 Feb 26 16:14 agis_schedconf.cvmfs.json
[2025-02-26 16:58:05] -rw------- 1 boinc boinc   1569202 Feb 26 16:14 agis_ddmendpoints.agis.ALL.json
[2025-02-26 16:58:05] drwx------ 4 boinc boinc      4096 Feb 26 16:14 pilot3
[2025-02-26 16:58:05] -rw------- 1 boinc boinc 172615148 Feb 26 16:57 HITS.43401171._002178.pool.root.1
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc       529 Feb 26 16:57 boinc_task_state.xml
[2025-02-26 16:58:05] -rw------- 1 boinc boinc        95 Feb 26 16:57 pilot_heartbeat.json
[2025-02-26 16:58:05] -rw------- 1 boinc boinc      1014 Feb 26 16:57 memory_monitor_summary.json
[2025-02-26 16:58:05] -rw------- 1 boinc boinc    341917 Feb 26 16:57 log.43401171._002178.job.log.tgz.1
[2025-02-26 16:58:05] -rw------- 1 boinc boinc      7678 Feb 26 16:57 heartbeat.json
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc      8192 Feb 26 16:57 boinc_mmap_file
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc        27 Feb 26 16:57 wrapper_checkpoint.txt
[2025-02-26 16:58:05] -rw------- 1 boinc boinc      4473 Feb 26 16:58 pilotlog.txt
[2025-02-26 16:58:05] -rw------- 1 boinc boinc    285254 Feb 26 16:58 log.43401171._002178.job.log.1
[2025-02-26 16:58:05] -rw------- 1 boinc boinc       357 Feb 26 16:58 output.list
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc       620 Feb 26 16:58 runtime_log
[2025-02-26 16:58:05] -rw------- 1 boinc boinc    645120 Feb 26 16:58 result.tar.gz
[2025-02-26 16:58:05] -rw------- 1 boinc boinc       655 Feb 26 16:58 UkzLDmRkI76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmnSxKDmWBh7am.diag
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc     11050 Feb 26 16:58 runtime_log.err
[2025-02-26 16:58:05] -rw-r--r-- 1 boinc boinc     21536 Feb 26 16:58 stderr.txt
[2025-02-26 16:58:05] HITS file was successfully produced:
[2025-02-26 16:58:05] -rw------- 1 boinc boinc 172615148 Feb 26 16:57 shared/HITS.pool.root.1
[2025-02-26 16:58:05]  *** Contents of shared directory: ***
[2025-02-26 16:58:05] total 415144
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc 251307494 Feb 26 16:14 ATLAS.root_0
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc     17569 Feb 26 16:14 start_atlas.sh
[2025-02-26 16:58:05] -rw-r--r-- 2 boinc boinc    503553 Feb 26 16:14 input.tar.gz
[2025-02-26 16:58:05] -rw------- 1 boinc boinc 172615148 Feb 26 16:57 HITS.pool.root.1
[2025-02-26 16:58:05] -rw------- 1 boinc boinc    645120 Feb 26 16:58 result.tar.gz
16:58:06 (2611001): run_atlas exited; CPU time 22274.714743
16:58:06 (2611001): called boinc_finish(0)

</stderr_txt>
]]>

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