Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-25 17:04:01 (9636): Detected: vboxwrapper 26206
2025-02-25 17:04:01 (9636): Detected: BOINC client v8.0.4
2025-02-25 17:04:01 (9636): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-25 17:04:01 (9636): Successfully copied 'init_data.xml' to the shared directory.
2025-02-25 17:04:02 (9636): Create VM. (boinc_6c51fa478a47928b, slot#3)
2025-02-25 17:04:02 (9636): Setting Memory Size for VM. (4400MB)
2025-02-25 17:04:03 (9636): Setting CPU Count for VM. (4)
2025-02-25 17:04:03 (9636): Setting Chipset Options for VM.
2025-02-25 17:04:03 (9636): Setting Graphics Controller Options for VM.
2025-02-25 17:04:03 (9636): Setting Boot Options for VM.
2025-02-25 17:04:04 (9636): Setting Network Configuration for NAT.
2025-02-25 17:04:04 (9636): Enabling VM Network Access.
2025-02-25 17:04:04 (9636): Disabling USB Support for VM.
2025-02-25 17:04:04 (9636): Disabling COM Port Support for VM.
2025-02-25 17:04:05 (9636): Disabling LPT Port Support for VM.
2025-02-25 17:04:05 (9636): Disabling Audio Support for VM.
2025-02-25 17:04:05 (9636): Disabling Clipboard Support for VM.
2025-02-25 17:04:05 (9636): Disabling Drag and Drop Support for VM.
2025-02-25 17:04:06 (9636): Adding storage controller(s) to VM.
2025-02-25 17:04:06 (9636): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-25 17:04:06 (9636): Adding VirtualBox Guest Additions to VM.
2025-02-25 17:04:07 (9636): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-25 17:04:07 (9636): forwarding host port 55111 to guest port 80
2025-02-25 17:04:07 (9636): Enabling remote desktop for VM.
2025-02-25 17:04:07 (9636): Required extension pack not installed, remote desktop not enabled.
2025-02-25 17:04:07 (9636): Enabling shared directory for VM.
2025-02-25 17:04:08 (9636): Starting VM using VBoxManage interface. (boinc_6c51fa478a47928b, slot#3)
2025-02-25 17:04:13 (9636): Successfully started VM. (PID = '9936')
2025-02-25 17:04:13 (9636): Reporting VM Process ID to BOINC.
2025-02-25 17:04:13 (9636): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-25 17:04:13 (9636): Guest Log: CPUID EDX: 0x178bfbff
2025-02-25 17:04:13 (9636): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-25 17:04:13 (9636): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-25 17:04:13 (9636): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-25 17:04:13 (9636): Detected: Web Application Enabled (http://localhost:55111)
2025-02-25 17:04:13 (9636): Preference change detected
2025-02-25 17:04:13 (9636): Setting CPU throttle for VM. (60%)
2025-02-25 17:04:13 (9636): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-25 17:04:15 (9636): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-25 17:04:15 (9636): Guest Log: BIOS: Booting from Hard Disk...
2025-02-25 17:04:18 (9636): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-25 17:04:18 (9636): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-25 17:04:18 (9636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-25 17:04:31 (9636): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-25 17:04:31 (9636): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-25 17:04:41 (9636): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.000177 main     Log opened 2025-02-25T17:04:39.104529000Z
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.000286 main     OS Product: Linux
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.001366 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.001418 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.001449 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.001450 main     Process ID: 1298
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.001450 main     Package type: LINUX_64BITS_GENERIC
2025-02-25 17:04:41 (9636): Guest Log: 00:00:00.002307 main     5.2.32 r132073 started. Verbose level = 0
2025-02-25 17:04:42 (9636): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-25 17:04:42 (9636): Guest Log: [INFO] Mounting shared directory
2025-02-25 17:04:42 (9636): Guest Log: [INFO] Checking for init_data.xml
2025-02-25 17:04:46 (9636): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-25 17:04:46 (9636): Guest Log: [INFO] Detected branch: prod
2025-02-25 17:04:46 (9636): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-25 17:04:46 (9636): Guest Log: Copying input files
2025-02-25 17:04:49 (9636): Guest Log: Copied input files into RunAtlas.
2025-02-25 17:04:49 (9636): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-25 17:04:49 (9636): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-25 17:04:49 (9636): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-25 17:04:49 (9636): Guest Log: Further information can be found at the LHC@home message board.
2025-02-25 17:04:51 (9636): Guest Log: 00:00:10.014441 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 024 514 000ns (GuestNow=1 740 521 091 132 624 000 ns GuestLast=1 740 503 079 108 110 000 ns fSetTimeLastLoop=true )
2025-02-25 17:04:58 (9636): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-25 17:04:58 (9636): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-25 17:04:58 (9636): Guest Log: 2.6.3.0 1572 0 30152 143052 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-25 17:05:00 (9636): Guest Log: copied the webapp to /var/www
2025-02-25 17:05:00 (9636): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-25 17:05:00 (9636): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-25 17:05:01 (9636): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-25 17:05:01 (9636): Guest Log:  *** Starting ATLAS job. (PandaID=6531001310 taskID=43401171) ***
2025-02-25 18:44:16 (9636): Status Report: Elapsed Time: '6000.000000'
2025-02-25 18:44:16 (9636): Status Report: CPU Time: '9516.328125'
2025-02-25 20:24:20 (9636): Status Report: Elapsed Time: '12000.000000'
2025-02-25 20:24:20 (9636): Status Report: CPU Time: '21900.484375'
2025-02-25 22:00:08 (9636): Guest Log:  *** Job finished ***
2025-02-25 22:00:08 (9636): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 02:59:55,384 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 02:59:56,251 | INFO     | [job] queue monitor thread has finished
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 02:59:59,559 | INFO     | [data] queue_monitor thread has finished
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 02:59:59,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081876907840)>', '<ExcThread(monitor, started 140081222379264)>']
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:00,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:00,572 | INFO     | [monitor] control thread has ended
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,683 | INFO     | all workflow threads have been joined
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,683 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,683 | INFO     | traces error code: 0
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,683 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,805 [wrapper] ==== pilot stdout END ====
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,842 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,851 [wrapper] pilotpid: 5897
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:04,878 [wrapper] Pilot exit status: 0
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,019 [wrapper] pandaids: 6531001310
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,108 [wrapper] cleanup supervisor_pilot 16030 5898
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,125 [wrapper] Test setup, not cleaning
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,154 [wrapper] apfmon messages muted
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,203 [wrapper] ==== wrapper stdout END ====
2025-02-25 22:00:08 (9636): Guest Log: 2025-02-26 03:00:05,227 [wrapper] ==== wrapper stderr END ====
2025-02-25 22:00:08 (9636): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 22:00:08 (9636): Guest Log:     "exeErrorCode": 0,
2025-02-25 22:00:08 (9636): Guest Log:     "exeErrorDiag": "",
2025-02-25 22:00:08 (9636): Guest Log:     "pilotErrorCode": 0,
2025-02-25 22:00:08 (9636): Guest Log:     "pilotErrorDiag": "",
2025-02-25 22:00:08 (9636): Guest Log:  *** Listing of results directory ***
2025-02-25 22:00:08 (9636): Guest Log: total 186524
2025-02-25 22:00:08 (9636): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 25 21:07 pilot3.tar.gz
2025-02-25 22:00:08 (9636): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 25 21:38 runpilot2-wrapper.sh
2025-02-25 22:00:08 (9636): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 25 21:38 queuedata.json
2025-02-25 22:00:08 (9636): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 Feb 25 22:04 init_data.xml
2025-02-25 22:00:08 (9636): Guest Log: -rwxr-xr-x. 1 atlas atlas    503556 Feb 25 22:04 input.tar.gz
2025-02-25 22:00:08 (9636): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 25 22:04 start_atlas.sh
2025-02-25 22:00:08 (9636): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 25 22:04 EVNT.43401169._000053.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 22:00:08 (9636): Guest Log: -rw-r--r--. 1 atlas atlas      2543 Feb 25 22:05 pandaJob.out
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas       424 Feb 25 22:05 setup.sh.local
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas    987482 Feb 25 22:06 agis_schedconf.cvmfs.json
2025-02-25 22:00:08 (9636): Guest Log: drwx------. 4 atlas atlas      4096 Feb 25 22:06 pilot3
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas 184262285 Feb 26 02:58 HITS.43401171._001336.pool.root.1
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas        95 Feb 26 02:59 pilot_heartbeat.json
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas      1029 Feb 26 02:59 memory_monitor_summary.json
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas   1573632 Feb 26 02:59 agis_ddmendpoints.agis.ALL.json
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas    334229 Feb 26 02:59 log.43401171._001336.job.log.tgz.1
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas      7732 Feb 26 02:59 heartbeat.json
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 26 03:00 pilotlog.txt
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas   1169393 Feb 26 03:00 log.43401171._001336.job.log.1
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas       357 Feb 26 03:00 output.list
2025-02-25 22:00:08 (9636): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 26 03:00 runtime_log
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas   1525760 Feb 26 03:00 result.tar.gz
2025-02-25 22:00:08 (9636): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Feb 26 03:00 runtime_log.err
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas       647 Feb 26 03:00 mLBODmIoH76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmI7wKDmtdZjFo.diag
2025-02-25 22:00:08 (9636): Guest Log: Looking for outputfile HITS.43401171._001336.pool.root.1
2025-02-25 22:00:08 (9636): Guest Log: HITS file was successfully produced
2025-02-25 22:00:08 (9636): Guest Log: -rw-------. 1 atlas atlas 184262285 Feb 26 02:58 /home/atlas/RunAtlas/HITS.43401171._001336.pool.root.1
2025-02-25 22:00:10 (9636): Guest Log: Successfully finished the ATLAS job!
2025-02-25 22:00:10 (9636): Guest Log: Copying the results back to the shared directory!
2025-02-25 22:00:10 (9636): Guest Log:  *** Contents of shared directory: ***
2025-02-25 22:00:10 (9636): Guest Log: total 429780
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root 253766904 Feb 25 22:04 ATLAS.root_0
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root 184262285 Feb 26 03:00 HITS.pool.root.1
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root     11034 Feb 25 22:04 init_data.xml
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root    503556 Feb 25 22:03 input.tar.gz
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root   1525760 Feb 26 03:00 result.tar.gz
2025-02-25 22:00:10 (9636): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 25 22:03 start_atlas.sh
2025-02-25 22:00:10 (9636): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 22:00:10 (9636): VM Completion File Detected.
2025-02-25 22:00:10 (9636): Powering off VM.
2025-02-25 22:00:11 (9636): Successfully stopped VM.
2025-02-25 22:00:11 (9636): Deregistering VM. (boinc_6c51fa478a47928b, slot#3)
2025-02-25 22:00:11 (9636): Removing network bandwidth throttle group from VM.
2025-02-25 22:00:11 (9636): Removing VM from VirtualBox.
22:00:16 (9636): called boinc_finish(0)

</stderr_txt>
]]>

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