Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
05:04:59 (1179031): wrapper (7.7.26015): starting
05:04:59 (1179031): wrapper: running run_atlas (--nthreads 12)
[2025-02-26 05:04:59] Arguments: --nthreads 12
[2025-02-26 05:04:59] Threads: 12
[2025-02-26 05:04:59] Checking for CVMFS
[2025-02-26 05:04:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-26 05:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-26 05:04:59] Running cvmfs_config stat atlas.cern.ch
[2025-02-26 05:04:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-26 05:04:59] 2.12.6.0 1166473 791 59380 143052 3 187 4439790 6291456 3552 130560 0 2731886 99.855 576683 274 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.11.5:3128 1
[2025-02-26 05:04:59] CVMFS is ok
[2025-02-26 05:04:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-26 05:04:59] Checking for apptainer binary...
[2025-02-26 05:04:59] apptainer is not installed, using version from CVMFS
[2025-02-26 05:04:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-26 05:04:59] pm111
[2025-02-26 05:04:59] apptainer works
[2025-02-26 05:04:59] Set ATHENA_PROC_NUMBER=12
[2025-02-26 05:04:59] Set ATHENA_CORE_NUMBER=12
[2025-02-26 05:04:59] Starting ATLAS job with PandaID=6530434927
[2025-02-26 05:04:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-26 06:29:14]  *** The last 200 lines of the pilot log: ***
[2025-02-26 06:29:14]  guid=b522f310-eeed-47d8-99ef-c2d142e1c57c
[2025-02-26 06:29:14]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-02-26 06:29:14]  is_altstaged=None
[2025-02-26 06:29:14]  is_tar=False
[2025-02-26 06:29:14]  lfn=log.43401163._000681.job.log.tgz.1
[2025-02-26 06:29:14]  mtime=0
[2025-02-26 06:29:14]  protocol_id=None
[2025-02-26 06:29:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-26 06:29:14]  replicas=None
[2025-02-26 06:29:14]  scope=mc23_13p6TeV
[2025-02-26 06:29:14]  status=None
[2025-02-26 06:29:14]  status_code=0
[2025-02-26 06:29:14]  storage_token=
[2025-02-26 06:29:14]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6530434927/log.43401163._000681.job.log.tgz.1
[2025-02-26 06:29:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/71/log.43401163._000681.job.log.tgz.1
[2025-02-26 06:29:14]  workdir=None
[2025-02-26 06:29:14] ]
[2025-02-26 06:29:14] 2025-02-25 23:28:49,533 | INFO     | transferring file log.43401163._000681.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6530434927/log.43401163._000681.job.log.tgz.1 to /var/lib/boinc
[2025-02-26 06:29:14] 2025-02-25 23:28:49,533 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6530434927/log.43401163._000681.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.434011
[2025-02-26 06:29:14] 2025-02-25 23:28:49,544 | INFO     | adding to output.list: log.43401163._000681.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/71/log.43401163._000681.job.log.tg
[2025-02-26 06:29:14] 2025-02-25 23:28:49,545 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-26 06:29:14] 2025-02-25 23:28:49,545 | INFO     | summary of transferred files:
[2025-02-26 06:29:14] 2025-02-25 23:28:49,545 | INFO     |  -- lfn=log.43401163._000681.job.log.tgz.1, status_code=0, status=transferred
[2025-02-26 06:29:14] 2025-02-25 23:28:49,545 | INFO     | stage-out finished correctly
[2025-02-26 06:29:14] 2025-02-25 23:28:49,604 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-26 06:29:14] 2025-02-25 23:28:51,962 | INFO     | job 6530434927 has state=finished
[2025-02-26 06:29:14] 2025-02-25 23:28:51,963 | INFO     | preparing for final server update for job 6530434927 in state='finished'
[2025-02-26 06:29:14] 2025-02-25 23:28:51,964 | INFO     | this job has now completed (state=finished)
[2025-02-26 06:29:14] 2025-02-25 23:28:51,964 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-26 06:29:14] 2025-02-25 23:28:51,964 | INFO     | log transfer has been attempted: DONE
[2025-02-26 06:29:14] 2025-02-25 23:28:51,964 | INFO     | job 6530434927 has finished - writing final server update
[2025-02-26 06:29:14] 2025-02-25 23:28:51,965 | INFO     | total number of processed events: 400 (read)
[2025-02-26 06:29:14] 2025-02-25 23:28:51,970 | INFO     | executing command: lscpu
[2025-02-26 06:29:14] 2025-02-25 23:28:52,002 | INFO     | found 36 cores (18 cores per socket, 2 sockets)
[2025-02-26 06:29:14] 2025-02-25 23:28:52,020 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-26 06:29:14] 2025-02-25 23:28:54,595 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-26 06:29:14] 2025-02-25 23:28:54,596 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6530434927/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,602 | INFO     | extracted standard info from prmon json
[2025-02-26 06:29:14] 2025-02-25 23:28:54,602 | INFO     | extracted standard memory fields from prmon json
[2025-02-26 06:29:14] 2025-02-25 23:28:54,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-26 06:29:14] 2025-02-25 23:28:54,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-26 06:29:14] 2025-02-25 23:28:54,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-26 06:29:14] 2025-02-25 23:28:54,605 | INFO     | fitting pss+swap vs Time
[2025-02-26 06:29:14] 2025-02-25 23:28:54,606 | INFO     | model: linear, x: [1740521434.0, 1740521495.0, 1740521556.0, 1740521617.0, 1740521678.0, 1740521739.0, 1740521800.0, 1740521861.0, 1740521922.0, 1740521983.0, 1740
[2025-02-26 06:29:14] 2025-02-25 23:28:54,606 | INFO     | sum of square deviations: 130793150.0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,606 | INFO     | sum of deviations: 2386300480.0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | mean x: 1740523691.0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | mean y: 2681954.8666666667
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | -- intersect: -31752899429.05651
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | intersect: -31752899429.05651
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | chi2: 0.09619296319148313
[2025-02-26 06:29:14] 2025-02-25 23:28:54,607 | INFO     | -- intersect: -31752899429.05651
[2025-02-26 06:29:14] 2025-02-25 23:28:54,608 | INFO     | current memory leak: 18.24 B/s (using 75 data points, chi2=0.10)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,608 | INFO     | ..............................
[2025-02-26 06:29:14] 2025-02-25 23:28:54,608 | INFO     | . Timing measurements:
[2025-02-26 06:29:14] 2025-02-25 23:28:54,608 | INFO     | . get job = 0 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . initial setup = 3 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . payload setup = 3 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . stage-in = 0 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . payload execution = 4999 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . stage-out = 0 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | . log creation = 0 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,609 | INFO     | ..............................
[2025-02-26 06:29:14] 2025-02-25 23:28:54,682 | WARNING  | process 1193525 can no longer be monitored (due to stat problems) - aborting
[2025-02-26 06:29:14] 2025-02-25 23:28:54,708 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6530434927/memory_monitor_summary.json (trf name=prmon)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,757 | INFO     | 
[2025-02-26 06:29:14] 2025-02-25 23:28:54,757 | INFO     | job summary report
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | --------------------------------------------------
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | PanDA job id: 6530434927
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | task id: 43401163
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | errors: (none)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | pilot state: finished 
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | transexitcode: 0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | exeerrorcode: 0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | exeerrordiag: 
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | exitcode: 0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | exitmsg: OK
[2025-02-26 06:29:14] 2025-02-25 23:28:54,758 | INFO     | cpuconsumptiontime: 50526 s
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | nevents: 400
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | neventsw: 0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | pid: 1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | pgrp: 1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | corecount: 12
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | event service: False
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | sizes: {0: 2370386, 3: 2370592, 11: 2370620, 5006: 2396854, 5007: 2405865, 5012: 2405979}
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | --------------------------------------------------
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | 
[2025-02-26 06:29:14] 2025-02-25 23:28:54,759 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-02-26 06:29:14] 2025-02-25 23:28:54,772 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,772 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,772 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,772 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,773 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | job 6530434927 has completed (purged errors)
[2025-02-26 06:29:14] 2025-02-25 23:28:54,774 | INFO     | overall cleanup function is called
[2025-02-26 06:29:14] 2025-02-25 23:28:54,785 | INFO     | number of running child processes to parent process 1193525: 1
[2025-02-26 06:29:14] 2025-02-25 23:28:54,785 | INFO     | maximum number of monitored processes: 6
[2025-02-26 06:29:14] 2025-02-25 23:28:54,785 | INFO     | aborting job monitoring since job object (job id=6530434927) has expired
[2025-02-26 06:29:14] 2025-02-25 23:28:55,781 | INFO     | --- collectZombieJob: --- 10, [1193525]
[2025-02-26 06:29:14] 2025-02-25 23:28:55,781 | INFO     | zombie collector waiting for pid 1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:55,782 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-26 06:29:14] 2025-02-25 23:28:55,782 | INFO     | collected zombie processes
[2025-02-26 06:29:14] 2025-02-25 23:28:55,782 | INFO     | will attempt to kill all subprocesses of pid=1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:55,844 | INFO     | process IDs to be killed: [1193525] (in reverse order)
[2025-02-26 06:29:14] 2025-02-25 23:28:55,917 | WARNING  | found no corresponding commands to process id(s)
[2025-02-26 06:29:14] 2025-02-25 23:28:55,917 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-26 06:29:14] 2025-02-25 23:28:55,923 | INFO     | did not find any defunct processes belonging to 1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:55,928 | INFO     | did not find any defunct processes belonging to 1193525
[2025-02-26 06:29:14] 2025-02-25 23:28:55,928 | INFO     | ready for new job
[2025-02-26 06:29:14] 2025-02-25 23:28:55,928 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-26 06:29:14] 2025-02-25 23:28:55,929 | INFO     | **************************************
[2025-02-26 06:29:14] 2025-02-25 23:28:55,930 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-26 06:29:14] 2025-02-25 23:28:55,930 | INFO     | **************************************
[2025-02-26 06:29:14] 2025-02-25 23:28:55,930 | INFO     | 
[2025-02-26 06:29:14] 2025-02-25 23:28:55,932 | INFO     | architecture information:
[2025-02-26 06:29:14] 2025-02-25 23:28:55,932 | INFO     | executing command: cat /etc/os-release
[2025-02-26 06:29:14] 2025-02-25 23:28:55,942 | INFO     | cat /etc/os-release:
[2025-02-26 06:29:14] NAME="CentOS Linux"
[2025-02-26 06:29:14] VERSION="7 (Core)"
[2025-02-26 06:29:14] ID="centos"
[2025-02-26 06:29:14] ID_LIKE="rhel fedora"
[2025-02-26 06:29:14] VERSION_ID="7"
[2025-02-26 06:29:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-26 06:29:14] ANSI_COLOR="0;31"
[2025-02-26 06:29:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-26 06:29:14] HOME_URL="https://www.centos.org/"
[2025-02-26 06:29:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-26 06:29:14] 
[2025-02-26 06:29:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-26 06:29:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-26 06:29:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-26 06:29:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-26 06:29:14] 
[2025-02-26 06:29:14] 2025-02-25 23:28:55,942 | INFO     | **************************************
[2025-02-26 06:29:14] 2025-02-25 23:28:56,445 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-02-26 06:29:14] 2025-02-25 23:28:56,459 | INFO     | sufficient remaining disk space (1727868698624 B)
[2025-02-26 06:29:14] 2025-02-25 23:28:56,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-26 06:29:14] 2025-02-25 23:28:56,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-26 06:29:14] 2025-02-25 23:28:56,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-26 06:29:14] 2025-02-25 23:28:56,459 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-26 06:29:14] 2025-02-25 23:28:56,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-26 06:29:14] 2025-02-25 23:28:56,460 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-26 06:29:14] 2025-02-25 23:28:56,461 | INFO     | aborting loop
[2025-02-26 06:29:14] 2025-02-25 23:28:56,461 | INFO     | found 0 job(s) in 20 queues
[2025-02-26 06:29:14] 2025-02-25 23:28:56,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-26 06:29:14] 2025-02-25 23:28:56,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-26 06:29:14] 2025-02-25 23:28:56,501 | INFO     | all data control threads have been joined
[2025-02-26 06:29:14] 2025-02-25 23:28:57,464 | INFO     | [job] retrieve thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,465 | INFO     | [job] queue monitor thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,466 | INFO     | [job] job monitor thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,506 | INFO     | [data] control thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,610 | INFO     | [payload] validate_post thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,614 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-26 06:29:14] 2025-02-25 23:28:57,708 | INFO     | [payload] failed_post thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,718 | INFO     | [payload] validate_pre thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:57,720 | INFO     | all job control threads have been joined
[2025-02-26 06:29:14] 2025-02-25 23:28:57,738 | INFO     | all payload control threads have been joined
[2025-02-26 06:29:14] 2025-02-25 23:28:58,007 | INFO     | [job] create_data_payload thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:58,559 | INFO     | [payload] execute_payloads thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:58,726 | INFO     | [job] control thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:58,743 | INFO     | [payload] control thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:58,859 | INFO     | [job] validate thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:58,909 | INFO     | [data] copytool_in thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:28:59,620 | INFO     | [data] copytool_out thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:29:00,466 | INFO     | [data] queue_monitor thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:29:06,690 | INFO     | job.realtimelogging is not enabled
[2025-02-26 06:29:14] 2025-02-25 23:29:07,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-26 06:29:14] 2025-02-25 23:29:09,470 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123720931153728)>', '<ExcThread(monitor, started 123720356071168)>']
[2025-02-26 06:29:14] 2025-02-25 23:29:09,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-26 06:29:14] 2025-02-25 23:29:09,527 | INFO     | [monitor] control thread has ended
[2025-02-26 06:29:14] 2025-02-25 23:29:14,472 | INFO     | all workflow threads have been joined
[2025-02-26 06:29:14] 2025-02-25 23:29:14,472 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-26 06:29:14] 2025-02-25 23:29:14,472 | INFO     | traces error code: 0
[2025-02-26 06:29:14] 2025-02-25 23:29:14,473 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-26 06:29:14] 2025-02-25 23:29:14,565 [wrapper] ==== pilot stdout END ====
[2025-02-26 06:29:14] 2025-02-25 23:29:14,567 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-26 06:29:14] 2025-02-25 23:29:14,569 [wrapper] pilotpid: 1183232
[2025-02-26 06:29:14] 2025-02-25 23:29:14,571 [wrapper] Pilot exit status: 0
[2025-02-26 06:29:14] 2025-02-25 23:29:14,578 [wrapper] pandaids: 6530434927
[2025-02-26 06:29:14] 2025-02-25 23:29:14,616 [wrapper] cleanup supervisor_pilot 1476656 1183233
[2025-02-26 06:29:14] 2025-02-25 23:29:14,618 [wrapper] Test setup, not cleaning
[2025-02-26 06:29:14] 2025-02-25 23:29:14,621 [wrapper] apfmon messages muted
[2025-02-26 06:29:14] 2025-02-25 23:29:14,623 [wrapper] ==== wrapper stdout END ====
[2025-02-26 06:29:14] 2025-02-25 23:29:14,624 [wrapper] ==== wrapper stderr END ====
[2025-02-26 06:29:14]  *** Error codes and diagnostics ***
[2025-02-26 06:29:14]     "exeErrorCode": 0,
[2025-02-26 06:29:14]     "exeErrorDiag": "",
[2025-02-26 06:29:14]     "pilotErrorCode": 0,
[2025-02-26 06:29:14]     "pilotErrorDiag": "",
[2025-02-26 06:29:14]  *** Listing of results directory ***
[2025-02-26 06:29:14] total 431257
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc    491065 Feb 25 21:02 pilot3.tar.gz
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc      5118 Feb 25 21:29 queuedata.json
[2025-02-26 06:29:14] -rwx------ 1 boinc boinc     35865 Feb 25 21:29 runpilot2-wrapper.sh
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc       100 Feb 26 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-26 06:29:14] -rwxr-xr-x 1 boinc boinc      7986 Feb 26 05:04 run_atlas
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc       105 Feb 26 05:04 job.xml
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc      6827 Feb 26 05:04 init_data.xml
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc 250846743 Feb 26 05:04 EVNT.43401161._000028.pool.root.1
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc     17569 Feb 26 05:04 start_atlas.sh
[2025-02-26 06:29:14] drwxrwx--x 2 boinc boinc         5 Feb 26 05:04 shared
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc    503546 Feb 26 05:04 input.tar.gz
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc         0 Feb 26 05:04 boinc_lockfile
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc      2539 Feb 26 05:04 pandaJob.out
[2025-02-26 06:29:14] -rw------- 1 boinc boinc       459 Feb 26 05:04 setup.sh.local
[2025-02-26 06:29:14] -rw------- 1 boinc boinc    987482 Feb 26 05:05 agis_schedconf.cvmfs.json
[2025-02-26 06:29:14] -rw------- 1 boinc boinc   1573632 Feb 26 05:05 agis_ddmendpoints.agis.ALL.json
[2025-02-26 06:29:14] drwx------ 4 boinc boinc        20 Feb 26 05:05 pilot3
[2025-02-26 06:29:14] -rw------- 1 boinc boinc 188453279 Feb 26 06:28 HITS.43401163._000681.pool.root.1
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc       529 Feb 26 06:28 boinc_task_state.xml
[2025-02-26 06:29:14] -rw------- 1 boinc boinc        96 Feb 26 06:28 pilot_heartbeat.json
[2025-02-26 06:29:14] -rw------- 1 boinc boinc      1046 Feb 26 06:28 memory_monitor_summary.json
[2025-02-26 06:29:14] -rw------- 1 boinc boinc    361669 Feb 26 06:28 log.43401163._000681.job.log.tgz.1
[2025-02-26 06:29:14] -rw------- 1 boinc boinc      7709 Feb 26 06:28 heartbeat.json
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc      8192 Feb 26 06:29 boinc_mmap_file
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc        27 Feb 26 06:29 wrapper_checkpoint.txt
[2025-02-26 06:29:14] -rw------- 1 boinc boinc      4419 Feb 26 06:29 pilotlog.txt
[2025-02-26 06:29:14] -rw------- 1 boinc boinc    487465 Feb 26 06:29 log.43401163._000681.job.log.1
[2025-02-26 06:29:14] -rw------- 1 boinc boinc       357 Feb 26 06:29 output.list
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc       620 Feb 26 06:29 runtime_log
[2025-02-26 06:29:14] -rw------- 1 boinc boinc    870400 Feb 26 06:29 result.tar.gz
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc     11454 Feb 26 06:29 runtime_log.err
[2025-02-26 06:29:14] -rw------- 1 boinc boinc       649 Feb 26 06:29 ARPLDmS7A76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmGnfKDmPKHDRm.diag
[2025-02-26 06:29:14] -rw-r--r-- 1 boinc boinc     21189 Feb 26 06:29 stderr.txt
[2025-02-26 06:29:14] HITS file was successfully produced:
[2025-02-26 06:29:14] -rw------- 1 boinc boinc 188453279 Feb 26 06:28 shared/HITS.pool.root.1
[2025-02-26 06:29:14]  *** Contents of shared directory: ***
[2025-02-26 06:29:14] total 429831
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc 250846743 Feb 26 05:04 ATLAS.root_0
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc     17569 Feb 26 05:04 start_atlas.sh
[2025-02-26 06:29:14] -rw-r--r-- 2 boinc boinc    503546 Feb 26 05:04 input.tar.gz
[2025-02-26 06:29:14] -rw------- 1 boinc boinc 188453279 Feb 26 06:28 HITS.pool.root.1
[2025-02-26 06:29:14] -rw------- 1 boinc boinc    870400 Feb 26 06:29 result.tar.gz
06:29:15 (1179031): run_atlas exited; CPU time 50514.418959
06:29:15 (1179031): called boinc_finish(0)

</stderr_txt>
]]>

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