| Name | u4eLDmffF76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJ4wKDmRZgGLm_1 |
| Workunit | 230559199 |
| Created | 25 Feb 2025, 20:14:00 UTC |
| Sent | 25 Feb 2025, 20:14:01 UTC |
| Report deadline | 5 Mar 2025, 20:14:01 UTC |
| Received | 26 Feb 2025, 1:21:33 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830557 |
| Run time | 1 hours 43 min 43 sec |
| CPU time | 6 hours 21 min 37 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 12.00 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.55 GB |
| Peak swap size | 3.03 GB |
| Peak disk usage | 607.64 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:14:18 (10347): wrapper (7.7.26015): starting
15:14:18 (10347): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 15:14:18] Arguments: --nthreads 8
[2025-02-25 15:14:18] Threads: 8
[2025-02-25 15:14:18] Checking for CVMFS
[2025-02-25 15:14:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 15:14:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 15:14:18] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 15:14:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 15:14:19] 2.11.2.0 19494 394 109020 143050 1 229 17927764 18432000 26654 130560 0 4970002 98.328 17943156 49854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 15:14:19] CVMFS is ok
[2025-02-25 15:14:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 15:14:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 15:14:19] Further information can be found at the LHC@home message board.
[2025-02-25 15:14:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 15:14:19] Checking for apptainer binary...
[2025-02-25 15:14:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 15:14:19] Running /usr/bin/apptainer --version
[2025-02-25 15:14:19] apptainer version 1.3.2-1.el7
[2025-02-25 15:14:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 15:14:23] c-212-18.aglt2.org
[2025-02-25 15:14:23] apptainer works
[2025-02-25 15:14:23] Set ATHENA_PROC_NUMBER=8
[2025-02-25 15:14:23] Set ATHENA_CORE_NUMBER=8
[2025-02-25 15:14:23] Starting ATLAS job with PandaID=6530793277
[2025-02-25 15:14:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:42:49 (10347): BOINC client no longer exists - exiting
19:42:49 (10347): timer handler: client dead, exiting
20:11:08 (63494): wrapper (7.7.26015): starting
20:11:08 (63494): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 20:11:08] Arguments: --nthreads 8
[2025-02-25 20:11:08] Threads: 8
[2025-02-25 20:11:08] This job has been restarted, cleaning up previous attempt
[2025-02-25 20:11:08] Checking for CVMFS
[2025-02-25 20:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 20:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 20:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 20:11:09] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 20:11:09]
[2025-02-25 20:11:09] CVMFS is ok
[2025-02-25 20:11:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 20:11:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 20:11:09] Further information can be found at the LHC@home message board.
[2025-02-25 20:11:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 20:11:09] Checking for apptainer binary...
[2025-02-25 20:11:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 20:11:09] Running /usr/bin/apptainer --version
[2025-02-25 20:11:09] apptainer version 1.3.2-1.el7
[2025-02-25 20:11:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 20:11:14] c-212-18.aglt2.org
[2025-02-25 20:11:14] apptainer works
[2025-02-25 20:11:14] Set ATHENA_PROC_NUMBER=8
[2025-02-25 20:11:14] Set ATHENA_CORE_NUMBER=8
[2025-02-25 20:11:14] Starting ATLAS job with PandaID=6530793277
[2025-02-25 20:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 20:14:06] *** The last 200 lines of the pilot log: ***
[2025-02-25 20:14:06] 2025-02-26 01:13:34,381 | INFO | transferring file log.43401137._002116.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6530793277/log.43401137._002116.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 20:14:06] 2025-02-26 01:13:34,382 | INFO | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6530793277/log.43401137._002116.job.log.tgz.1 /tmp/boinchome/slots/3/log.43401137._002116.job
[2025-02-25 20:14:06] 2025-02-26 01:13:34,398 | INFO | adding to output.list: log.43401137._002116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/62/log.43401137._002116.job.log.tg
[2025-02-25 20:14:06] 2025-02-26 01:13:34,399 | INFO | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 20:14:06] 2025-02-26 01:13:34,399 | INFO | summary of transferred files:
[2025-02-25 20:14:06] 2025-02-26 01:13:34,399 | INFO | -- lfn=log.43401137._002116.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 20:14:06] 2025-02-26 01:13:34,399 | INFO | stage-out finished correctly
[2025-02-25 20:14:06] 2025-02-26 01:13:37,577 | INFO | finished stage-out (of log) for failed payload
[2025-02-25 20:14:06] 2025-02-26 01:13:38,697 | INFO | job 6530793277 has state=failed
[2025-02-25 20:14:06] 2025-02-26 01:13:38,697 | INFO | preparing for final server update for job 6530793277 in state='failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:39,221 | WARNING | process 46156 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 20:14:06] 2025-02-26 01:13:39,222 | INFO | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6530793277/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,222 | WARNING | job state is 'failed' - order log transfer and abort job_monitor() (2)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,261 | INFO | will perform stage-out for job id=6530793277
[2025-02-25 20:14:06] 2025-02-26 01:13:39,261 | WARNING | log transfer already attempted
[2025-02-25 20:14:06] 2025-02-26 01:13:39,701 | INFO | stage-out has finished, proceed with final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:39,702 | INFO | proceeding with final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:39,702 | INFO | this job has now completed (state=failed)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,702 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,702 | INFO | log transfer has been attempted: DONE
[2025-02-25 20:14:06] 2025-02-26 01:13:39,703 | INFO | job 6530793277 has failed - writing final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:39,703 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2025-02-25 20:14:06] 2025-02-26 01:13:39,703 | INFO | payload/TRF did not report the number of read events
[2025-02-25 20:14:06] 2025-02-26 01:13:39,707 | INFO | executing command: lscpu
[2025-02-25 20:14:06] 2025-02-26 01:13:39,741 | INFO | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,758 | INFO | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 20:14:06] 2025-02-26 01:13:41,763 | INFO | monitor loop #13: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:41,764 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:42,141 | WARNING | log transfer already attempted
[2025-02-25 20:14:06] 2025-02-26 01:13:42,141 | INFO | job 6530793277 failed during stage-out
[2025-02-25 20:14:06] 2025-02-26 01:13:44,274 | INFO | monitor loop #14: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:44,275 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:45,001 | WARNING | ec=127, stdout=, stderr=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 255: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/versi
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 257: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/parseVersionVar.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 259: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/swConfig/functions.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 302: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/validator.sh: line 303: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] Error: unknown tool:
[2025-02-25 20:14:06] If it is a version or option for a tool, you need to put it in double quotes.
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/packageSetups/localSetup.sh: line 102: /usr/bin/rm: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/swConfig/./asetup//menu-Linux.sh: line 31: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/swConfig/asetup/createUserASetup.sh: Transport endpoint is not conn
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/find: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/env: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/sed: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 323: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/checkGridUse.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 324: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 325: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 353: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/wrapper_readlink.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 353: /usr/bin/grep: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 407: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/cleanupFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 408: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/addBackupFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 412: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/addDevFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 427: /usr/bin/uname: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 448: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/checkValidity.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/swConfig/Pre/lsetup/menu.sh: line 17: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/packageSetups/localSetup.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /bin/bash: cpu_arch.py: command not found
[2025-02-25 20:14:06]
[2025-02-25 20:14:06] 2025-02-26 01:13:45,001 | INFO | no CPU architecture reporting
[2025-02-25 20:14:06] 2025-02-26 01:13:45,001 | INFO | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6530793277/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 20:14:06] 2025-02-26 01:13:45,002 | INFO | extracted standard info from prmon json
[2025-02-25 20:14:06] 2025-02-26 01:13:45,002 | INFO | extracted standard memory fields from prmon json
[2025-02-25 20:14:06] 2025-02-26 01:13:45,002 | WARNING | GPU info not found in prmon json: 'gpu'
[2025-02-25 20:14:06] 2025-02-26 01:13:45,003 | WARNING | format EVNTtoHITS has no such key: dbData
[2025-02-25 20:14:06] 2025-02-26 01:13:45,003 | WARNING | format EVNTtoHITS has no such key: dbTime
[2025-02-25 20:14:06] 2025-02-26 01:13:45,003 | WARNING | wrong length of table data, x=[1740532335.0, 1740532396.0], y=[1285.0, 715929.0] (must be same and length>=4)
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | ..............................
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . Timing measurements:
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . get job = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . initial setup = 2 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . payload setup = 7 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . stage-in = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . payload execution = 81 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . stage-out = 7 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | . log creation = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | ..............................
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | building log extracts (sent to the server as 'pilotLog')
[2025-02-25 20:14:06] 2025-02-26 01:13:45,004 | INFO | executing command: tail -n 20 /tmp/boinchome/slots/3/PanDA_Pilot-6530793277/pilotlog.txt
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:14:06] self._target(**self.kwargs)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:14:06] update_server(job, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:14:06] send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:14:06] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 817, in get_data_structure
[2025-02-25 20:14:06] add_timing_and_extracts(data, job, state, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 1043, in add_timing_and_extracts
[2025-02-25 20:14:06] extracts = user.get_log_extracts(job, state)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/diagnose.py", line 830, in get_log_extracts
[2025-02-25 20:14:06] _extracts = get_pilot_log_extracts(job)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/diagnose.py", line 882, in get_pilot_log_extracts
[2025-02-25 20:14:06] _tail = tail(path, nlines=20)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/util/filehandling.py", line 228, in tail
[2025-02-25 20:14:06] _, stdout, _ = execute(f'tail -n {nlines} {filename}')
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:14:06] process = subprocess.Popen(
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:14:06] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f80906cde80>)
[2025-02-25 20:14:06] Traceback (most recent call last):
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:14:06] self._target(**self.kwargs)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:14:06] update_server(job, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:14:06] send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:14:06] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 817, in get_data_structure
[2025-02-25 20:14:06] add_timing_and_extracts(data, job, state, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 1043, in add_timing_and_extracts
[2025-02-25 20:14:06] extracts = user.get_log_extracts(job, state)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/diagnose.py", line 830, in get_log_extracts
[2025-02-25 20:14:06] _extracts = get_pilot_log_extracts(job)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/diagnose.py", line 882, in get_pilot_log_extracts
[2025-02-25 20:14:06] _tail = tail(path, nlines=20)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/util/filehandling.py", line 228, in tail
[2025-02-25 20:14:06] _, stdout, _ = execute(f'tail -n {nlines} {filename}')
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:14:06] process = subprocess.Popen(
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:14:06] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:14:06]
[2025-02-25 20:14:06] None
[2025-02-25 20:14:06] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-02-25 20:14:06] setting graceful stop in 10 s since there is no point in continuing
[2025-02-25 20:14:06] 2025-02-26 01:13:46,395 | WARNING | thread 'queue_monitor' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:14:06] 2025-02-26 01:13:46,777 | INFO | monitor loop #15: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:46,778 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:47,150 | INFO | 127s have passed since pilot start
[2025-02-25 20:14:06] 2025-02-26 01:13:49,281 | INFO | monitor loop #16: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:49,281 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:51,783 | INFO | monitor loop #17: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:51,784 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:54,286 | INFO | monitor loop #18: job 0:6530793277 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:54,318 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:55,064 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 20:14:06] 2025-02-26 01:13:55,065 | WARNING | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:55,065 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:55,065 | INFO | found 1 job(s) in 20 queues
[2025-02-25 20:14:06] 2025-02-26 01:13:55,065 | INFO | aborting job 6530793277
[2025-02-25 20:14:06] 2025-02-26 01:13:55,066 | WARNING | could not find signal name for signal number None - using SIGTERM
[2025-02-25 20:14:06] 2025-02-26 01:13:55,065 | INFO | will abort loop
[2025-02-25 20:14:06] 2025-02-26 01:13:55,128 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 20:14:06] 2025-02-26 01:13:55,128 | WARNING | will wait for a maximum of 300 s for threads to finish
[2025-02-25 20:14:06] 2025-02-26 01:13:55,128 | WARNING | job_aborted has been set - aborting pilot monitoring
[2025-02-25 20:14:06] 2025-02-26 01:13:55,128 | INFO | [monitor] control thread has ended
[2025-02-25 20:14:06] 2025-02-26 01:13:55,334 | INFO | all data control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:55,345 | INFO | all payload control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:56,030 | INFO | all job control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:56,083 | INFO | [job] job monitor thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,194 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:56,339 | INFO | [data] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,350 | INFO | [payload] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,422 | INFO | [job] retrieve thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,544 | INFO | [payload] failed_post thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,575 | INFO | [job] validate thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,576 | INFO | [payload] validate_post thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,579 | INFO | [payload] execute_payloads thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,679 | INFO | [payload] run_realtimelog thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,766 | INFO | [job] create_data_payload thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,931 | INFO | [payload] validate_pre thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,033 | INFO | [job] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,071 | INFO | [data] copytool_out thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,367 | INFO | [data] copytool_in thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:58,434 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140190775363392)>', '<ExcThread(queue_monitoring, started 140190165210880)>']
[2025-02-25 20:14:06] 2025-02-26 01:14:00,198 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140190775363392)>', '<ExcThread(queue_monitoring, started 140190165210880)>']
[2025-02-25 20:14:06] 2025-02-26 01:14:00,199 | INFO | [data] queue_monitor thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:14:00,440 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140190775363392)>'])
[2025-02-25 20:14:06] 2025-02-26 01:14:05,462 | INFO | all workflow threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:14:05,462 | INFO | end of generic workflow (traces error code: 0)
[2025-02-25 20:14:06] 2025-02-26 01:14:05,462 | INFO | traces error code: 0
[2025-02-25 20:14:06] 2025-02-26 01:14:05,462 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== pilot stdout END ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stdout RESUME ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] pilotpid: 95937
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] Pilot exit status: 135
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cat: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: xargs: command not found
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] pandaids:
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 516: /usr/bin/ps: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] No supervise_pilot CHILD process found
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] Test setup, not cleaning
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 534: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] apfmon messages muted
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stdout END ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stderr END ====
[2025-02-25 20:14:06] *** Error codes and diagnostics ***
[2025-02-25 20:14:06] *** Listing of results directory ***
[2025-02-25 20:14:06] total 493444
[2025-02-25 20:14:06] drwx------ 4 boincer umatlas 4096 Dec 18 06:03 pilot3
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 491065 Feb 25 14:07 pilot3.tar.gz
[2025-02-25 20:14:06] -rwx------ 1 boincer umatlas 35865 Feb 25 14:21 runpilot2-wrapper.sh
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 5118 Feb 25 14:21 queuedata.json
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 100 Feb 25 15:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 20:14:06] -rwxr-xr-x 1 boincer umatlas 7986 Feb 25 15:14 run_atlas
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 105 Feb 25 15:14 job.xml
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 250672115 Feb 25 15:14 EVNT.43401135._000088.pool.root.1
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 250672115 Feb 25 15:14 ATLAS.root_0
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:14 start_atlas.sh
[2025-02-25 20:14:06] drwxrwx--x 2 boincer umatlas 4096 Feb 25 15:14 shared
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 503555 Feb 25 15:14 input.tar.gz
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 0 Feb 25 15:14 boinc_lockfile
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 6300 Feb 25 20:11 init_data.xml
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 2558 Feb 25 20:11 pandaJob.out
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 424 Feb 25 20:11 setup.sh.local
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 0 Feb 25 20:11 wrapper_sigint_95937
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 987490 Feb 25 20:11 agis_schedconf.cvmfs.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 1573632 Feb 25 20:11 agis_ddmendpoints.agis.ALL.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 708 Feb 25 20:12 heartbeat.json
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 529 Feb 25 20:13 boinc_task_state.xml
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 1017 Feb 25 20:13 memory_monitor_summary.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 40604 Feb 25 20:13 log.43401137._002116.job.log.tgz.1
[2025-02-25 20:14:06] drwxrwx--- 2 boincer umatlas 4096 Feb 25 20:13 PanDA_Pilot-6530793277
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 188 Feb 25 20:13 output.list
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 98 Feb 25 20:13 pilot_heartbeat.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 52091 Feb 25 20:14 pilotlog.txt
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 74231 Feb 25 20:14 log.43401137._002116.job.log.1
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 428 Feb 25 20:14 runtime_log
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 781 Feb 25 20:14 u4eLDmffF76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJ4wKDmRZgGLm.diag
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 28 Feb 25 20:14 wrapper_checkpoint.txt
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 8192 Feb 25 20:14 boinc_mmap_file
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 11670 Feb 25 20:14 runtime_log.err
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 26845 Feb 25 20:14 stderr.txt
[2025-02-25 20:14:06] No HITS result produced
[2025-02-25 20:14:06] *** Contents of shared directory: ***
[2025-02-25 20:14:06] total 245312
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 250672115 Feb 25 15:14 ATLAS.root_0
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:14 start_atlas.sh
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 503555 Feb 25 15:14 input.tar.gz
20:14:08 (63494): run_atlas exited; CPU time 37.925508
20:14:08 (63494): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>u4eLDmffF76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJ4wKDmRZgGLm_1_r195746957_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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