| Name | xUNNDme4F76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA5wKDmEkCVZm_1 |
| Workunit | 230559415 |
| Created | 25 Feb 2025, 20:12:24 UTC |
| Sent | 25 Feb 2025, 20:12:26 UTC |
| Report deadline | 5 Mar 2025, 20:12:26 UTC |
| Received | 26 Feb 2025, 1:21:33 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10830557 |
| Run time | 1 hours 37 min 4 sec |
| CPU time | 4 hours 45 min 16 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 12.00 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.53 GB |
| Peak swap size | 3.06 GB |
| Peak disk usage | 738.43 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
15:13:01 (65617): wrapper (7.7.26015): starting
15:13:01 (65617): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 15:13:01] Arguments: --nthreads 8
[2025-02-25 15:13:01] Threads: 8
[2025-02-25 15:13:01] Checking for CVMFS
[2025-02-25 15:13:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 15:13:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 15:13:02] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 15:13:02] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 15:13:02]
[2025-02-25 15:13:02] CVMFS is ok
[2025-02-25 15:13:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 15:13:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 15:13:02] Further information can be found at the LHC@home message board.
[2025-02-25 15:13:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 15:13:02] Checking for apptainer binary...
[2025-02-25 15:13:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 15:13:02] Running /usr/bin/apptainer --version
[2025-02-25 15:13:02] apptainer version 1.3.2-1.el7
[2025-02-25 15:13:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 15:13:07] c-212-18.aglt2.org
[2025-02-25 15:13:07] apptainer works
[2025-02-25 15:13:08] Set ATHENA_PROC_NUMBER=8
[2025-02-25 15:13:08] Set ATHENA_CORE_NUMBER=8
[2025-02-25 15:13:08] Starting ATLAS job with PandaID=6530851420
[2025-02-25 15:13:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:42:44 (65617): BOINC client no longer exists - exiting
19:42:44 (65617): timer handler: client dead, exiting
20:11:08 (63493): wrapper (7.7.26015): starting
20:11:08 (63493): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 20:11:08] Arguments: --nthreads 8
[2025-02-25 20:11:08] Threads: 8
[2025-02-25 20:11:08] This job has been restarted, cleaning up previous attempt
[2025-02-25 20:11:08] Checking for CVMFS
[2025-02-25 20:11:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 20:11:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 20:11:09] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 20:11:09] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/ligo.storage.igwn.org: Permission denied
[2025-02-25 20:11:09]
[2025-02-25 20:11:09] CVMFS is ok
[2025-02-25 20:11:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 20:11:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 20:11:09] Further information can be found at the LHC@home message board.
[2025-02-25 20:11:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 20:11:09] Checking for apptainer binary...
[2025-02-25 20:11:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 20:11:09] Running /usr/bin/apptainer --version
[2025-02-25 20:11:09] apptainer version 1.3.2-1.el7
[2025-02-25 20:11:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 20:11:14] c-212-18.aglt2.org
[2025-02-25 20:11:14] apptainer works
[2025-02-25 20:11:14] Set ATHENA_PROC_NUMBER=8
[2025-02-25 20:11:14] Set ATHENA_CORE_NUMBER=8
[2025-02-25 20:11:14] Starting ATLAS job with PandaID=6530851420
[2025-02-25 20:11:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 20:14:06] *** The last 200 lines of the pilot log: ***
[2025-02-25 20:14:06] workdir=None
[2025-02-25 20:14:06] ]
[2025-02-25 20:14:06] 2025-02-26 01:13:34,560 | INFO | transferring file log.43205094._040519.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6530851420/log.43205094._040519.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 20:14:06] 2025-02-26 01:13:34,561 | INFO | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6530851420/log.43205094._040519.job.log.tgz.1 /tmp/boinchome/slots/5/log.43205094._040519.job
[2025-02-25 20:14:06] 2025-02-26 01:13:34,575 | INFO | adding to output.list: log.43205094._040519.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/7f/log.43205094._040519.job.log.tg
[2025-02-25 20:14:06] 2025-02-26 01:13:34,576 | INFO | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 20:14:06] 2025-02-26 01:13:34,576 | INFO | summary of transferred files:
[2025-02-25 20:14:06] 2025-02-26 01:13:34,576 | INFO | -- lfn=log.43205094._040519.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 20:14:06] 2025-02-26 01:13:34,576 | INFO | stage-out finished correctly
[2025-02-25 20:14:06] 2025-02-26 01:13:34,710 | INFO | PID=96012 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-02-25 20:14:06] 2025-02-26 01:13:34,710 | INFO | .. there are 51 such processes running
[2025-02-25 20:14:06] 2025-02-26 01:13:37,720 | INFO | finished stage-out (of log) for failed payload
[2025-02-25 20:14:06] 2025-02-26 01:13:38,829 | INFO | job 6530851420 has state=failed
[2025-02-25 20:14:06] 2025-02-26 01:13:38,829 | INFO | preparing for final server update for job 6530851420 in state='failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:39,636 | WARNING | process 46090 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 20:14:06] 2025-02-26 01:13:39,637 | INFO | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6530851420/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 20:14:06] 2025-02-26 01:13:39,638 | WARNING | job state is 'failed' - order log transfer and abort job_monitor() (2)
[2025-02-25 20:14:06] 2025-02-26 01:13:41,148 | INFO | will perform stage-out for job id=6530851420
[2025-02-25 20:14:06] 2025-02-26 01:13:41,148 | WARNING | log transfer already attempted
[2025-02-25 20:14:06] 2025-02-26 01:13:41,342 | INFO | stage-out has finished, proceed with final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | INFO | proceeding with final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | INFO | this job has now completed (state=failed)
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | INFO | log transfer has been attempted: DONE
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | INFO | job 6530851420 has failed - writing final server update
[2025-02-25 20:14:06] 2025-02-26 01:13:41,343 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2025-02-25 20:14:06] 2025-02-26 01:13:41,344 | INFO | payload/TRF did not report the number of read events
[2025-02-25 20:14:06] 2025-02-26 01:13:41,347 | INFO | executing command: lscpu
[2025-02-25 20:14:06] 2025-02-26 01:13:41,377 | INFO | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 20:14:06] 2025-02-26 01:13:41,394 | INFO | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 20:14:06] 2025-02-26 01:13:42,211 | INFO | monitor loop #14: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:42,211 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:42,286 | WARNING | log transfer already attempted
[2025-02-25 20:14:06] 2025-02-26 01:13:42,286 | INFO | job 6530851420 failed during stage-out
[2025-02-25 20:14:06] 2025-02-26 01:13:44,716 | INFO | monitor loop #15: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:44,717 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:44,991 | WARNING | ec=127, stdout=, stderr=find: ‘/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/swConfig/Pre’: Software caused connection abort
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 297: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/.alrb/availableMash.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/env: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/sed: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/find: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/env: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/sed: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 302: /usr/bin/find: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 323: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/checkGridUse.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 324: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 325: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 353: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/wrapper_readlink.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 353: /usr/bin/grep: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 407: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/cleanupFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 408: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/addBackupFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 412: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/addDevFrontier.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 427: /usr/bin/uname: Transport endpoint is not connected
[2025-02-25 20:14:06] /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/user/atlasLocalSetup.sh: line 448: /cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/utilities/checkValidity.sh: Transport endpoint is not connected
[2025-02-25 20:14:06] /bin/bash: lsetup: command not found
[2025-02-25 20:14:06] /bin/bash: cpu_arch.py: command not found
[2025-02-25 20:14:06]
[2025-02-25 20:14:06] 2025-02-26 01:13:44,991 | INFO | no CPU architecture reporting
[2025-02-25 20:14:06] 2025-02-26 01:13:44,992 | INFO | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6530851420/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 20:14:06] 2025-02-26 01:13:44,992 | INFO | extracted standard info from prmon json
[2025-02-25 20:14:06] 2025-02-26 01:13:44,992 | INFO | extracted standard memory fields from prmon json
[2025-02-25 20:14:06] 2025-02-26 01:13:44,992 | WARNING | GPU info not found in prmon json: 'gpu'
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | WARNING | format EVNTtoHITS has no such key: dbData
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | WARNING | format EVNTtoHITS has no such key: dbTime
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | WARNING | wrong length of table data, x=[1740532335.0, 1740532396.0], y=[1749.0, 715986.0] (must be same and length>=4)
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | INFO | ..............................
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | INFO | . Timing measurements:
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | INFO | . get job = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | INFO | . initial setup = 2 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,993 | INFO | . payload setup = 7 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | . stage-in = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | . payload execution = 81 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | . stage-out = 7 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | . log creation = 0 s
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | ..............................
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | building log extracts (sent to the server as 'pilotLog')
[2025-02-25 20:14:06] 2025-02-26 01:13:44,994 | INFO | executing command: tail -n 20 /tmp/boinchome/slots/5/PanDA_Pilot-6530851420/pilotlog.txt
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:14:06] self._target(**self.kwargs)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:14:06] update_server(job, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:14:06] send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:14:06] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 817, in get_data_structure
[2025-02-25 20:14:06] add_timing_and_extracts(data, job, state, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 1043, in add_timing_and_extracts
[2025-02-25 20:14:06] extracts = user.get_log_extracts(job, state)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/diagnose.py", line 830, in get_log_extracts
[2025-02-25 20:14:06] _extracts = get_pilot_log_extracts(job)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/diagnose.py", line 882, in get_pilot_log_extracts
[2025-02-25 20:14:06] _tail = tail(path, nlines=20)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/util/filehandling.py", line 228, in tail
[2025-02-25 20:14:06] _, stdout, _ = execute(f'tail -n {nlines} {filename}')
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:14:06] process = subprocess.Popen(
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:14:06] unexpected exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f6fd43a8380>)
[2025-02-25 20:14:06] Traceback (most recent call last):
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/common/exception.py", line 466, in run
[2025-02-25 20:14:06] self._target(**self.kwargs)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2641, in queue_monitor
[2025-02-25 20:14:06] update_server(job, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 2688, in update_server
[2025-02-25 20:14:06] send_state(job, args, job.state, xml=dumps(job.fileinfo), metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 430, in send_state
[2025-02-25 20:14:06] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 817, in get_data_structure
[2025-02-25 20:14:06] add_timing_and_extracts(data, job, state, args)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/control/job.py", line 1043, in add_timing_and_extracts
[2025-02-25 20:14:06] extracts = user.get_log_extracts(job, state)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/diagnose.py", line 830, in get_log_extracts
[2025-02-25 20:14:06] _extracts = get_pilot_log_extracts(job)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/user/atlas/diagnose.py", line 882, in get_pilot_log_extracts
[2025-02-25 20:14:06] _tail = tail(path, nlines=20)
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/util/filehandling.py", line 228, in tail
[2025-02-25 20:14:06] _, stdout, _ = execute(f'tail -n {nlines} {filename}')
[2025-02-25 20:14:06] File "/tmp/boinchome/slots/5/pilot3/pilot/util/container.py", line 85, in execute
[2025-02-25 20:14:06] process = subprocess.Popen(
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2025-02-25 20:14:06] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2025-02-25 20:14:06] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:14:06]
[2025-02-25 20:14:06] None
[2025-02-25 20:14:06] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2025-02-25 20:14:06] setting graceful stop in 10 s since there is no point in continuing
[2025-02-25 20:14:06] 2025-02-26 01:13:46,418 | WARNING | thread 'queue_monitor' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2025-02-25 20:14:06] 2025-02-26 01:13:47,219 | INFO | monitor loop #16: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:47,220 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:47,745 | INFO | 127s have passed since pilot start
[2025-02-25 20:14:06] 2025-02-26 01:13:49,723 | INFO | monitor loop #17: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:49,723 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:52,227 | INFO | monitor loop #18: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:52,227 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:54,730 | INFO | monitor loop #19: job 0:6530851420 is in state 'failed'
[2025-02-25 20:14:06] 2025-02-26 01:13:54,730 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | WARNING | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | INFO | found 1 job(s) in 20 queues
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | INFO | will abort loop
[2025-02-25 20:14:06] 2025-02-26 01:13:55,072 | INFO | aborting job 6530851420
[2025-02-25 20:14:06] 2025-02-26 01:13:55,073 | WARNING | could not find signal name for signal number None - using SIGTERM
[2025-02-25 20:14:06] 2025-02-26 01:13:55,117 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 20:14:06] 2025-02-26 01:13:55,117 | WARNING | will wait for a maximum of 300 s for threads to finish
[2025-02-25 20:14:06] 2025-02-26 01:13:55,117 | WARNING | job_aborted has been set - aborting pilot monitoring
[2025-02-25 20:14:06] 2025-02-26 01:13:55,117 | INFO | [monitor] control thread has ended
[2025-02-25 20:14:06] 2025-02-26 01:13:55,423 | INFO | all data control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:55,436 | INFO | all payload control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:56,059 | INFO | all job control threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:13:56,078 | INFO | [job] job monitor thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,346 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 20:14:06] 2025-02-26 01:13:56,429 | INFO | [data] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,442 | INFO | [payload] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,459 | INFO | [payload] failed_post thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,461 | INFO | [payload] execute_payloads thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,599 | INFO | [job] retrieve thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,671 | INFO | [job] validate thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,723 | INFO | [payload] run_realtimelog thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,744 | INFO | [payload] validate_post thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,810 | INFO | [job] create_data_payload thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:56,942 | INFO | [payload] validate_pre thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,063 | INFO | [job] control thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,078 | INFO | [data] copytool_out thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:57,222 | INFO | [data] copytool_in thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:13:58,556 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140118507161408)>', '<ExcThread(queue_monitoring, started 140117385664256)>']
[2025-02-25 20:14:06] 2025-02-26 01:14:00,348 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140118507161408)>', '<ExcThread(queue_monitoring, started 140117385664256)>']
[2025-02-25 20:14:06] 2025-02-26 01:14:00,348 | INFO | [data] queue_monitor thread has finished
[2025-02-25 20:14:06] 2025-02-26 01:14:00,567 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140118507161408)>'])
[2025-02-25 20:14:06] 2025-02-26 01:14:05,569 | INFO | all workflow threads have been joined
[2025-02-25 20:14:06] 2025-02-26 01:14:05,570 | INFO | end of generic workflow (traces error code: 0)
[2025-02-25 20:14:06] 2025-02-26 01:14:05,570 | INFO | traces error code: 0
[2025-02-25 20:14:06] 2025-02-26 01:14:05,570 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== pilot stdout END ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stdout RESUME ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] pilotpid: 96012
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] Pilot exit status: 0
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cat: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: xargs: command not found
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 1015: /usr/bin/cut: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] pandaids:
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 516: /usr/bin/ps: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] No supervise_pilot CHILD process found
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] Test setup, not cleaning
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 534: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] apfmon messages muted
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stdout END ====
[2025-02-25 20:14:06] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2025-02-25 20:14:06] ==== wrapper stderr END ====
[2025-02-25 20:14:06] *** Error codes and diagnostics ***
[2025-02-25 20:14:06] *** Listing of results directory ***
[2025-02-25 20:14:06] total 676640
[2025-02-25 20:14:06] drwx------ 4 boincer umatlas 4096 Dec 18 06:03 pilot3
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 491065 Feb 25 14:07 pilot3.tar.gz
[2025-02-25 20:14:06] -rwx------ 1 boincer umatlas 35865 Feb 25 14:47 runpilot2-wrapper.sh
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 5118 Feb 25 14:47 queuedata.json
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 100 Feb 25 15:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 20:14:06] -rwxr-xr-x 1 boincer umatlas 7986 Feb 25 15:13 run_atlas
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 105 Feb 25 15:13 job.xml
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 344467698 Feb 25 15:13 EVNT.43092757._001719.pool.root.1
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 344467698 Feb 25 15:13 ATLAS.root_0
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 503554 Feb 25 15:13 input.tar.gz
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:13 start_atlas.sh
[2025-02-25 20:14:06] drwxrwx--x 2 boincer umatlas 4096 Feb 25 15:13 shared
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 0 Feb 25 15:13 boinc_lockfile
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 6300 Feb 25 20:11 init_data.xml
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 2549 Feb 25 20:11 pandaJob.out
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 424 Feb 25 20:11 setup.sh.local
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 0 Feb 25 20:11 wrapper_sigint_96012
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 987490 Feb 25 20:11 agis_schedconf.cvmfs.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 1573632 Feb 25 20:11 agis_ddmendpoints.agis.ALL.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 708 Feb 25 20:12 heartbeat.json
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 529 Feb 25 20:13 boinc_task_state.xml
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 1016 Feb 25 20:13 memory_monitor_summary.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 40558 Feb 25 20:13 log.43205094._040519.job.log.tgz.1
[2025-02-25 20:14:06] drwxrwx--- 2 boincer umatlas 4096 Feb 25 20:13 PanDA_Pilot-6530851420
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 188 Feb 25 20:13 output.list
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 98 Feb 25 20:13 pilot_heartbeat.json
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 51459 Feb 25 20:14 pilotlog.txt
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 73597 Feb 25 20:14 log.43205094._040519.job.log.1
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 428 Feb 25 20:14 runtime_log
[2025-02-25 20:14:06] -rw------- 1 boincer umatlas 781 Feb 25 20:14 xUNNDme4F76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA5wKDmEkCVZm.diag
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 28 Feb 25 20:14 wrapper_checkpoint.txt
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 8192 Feb 25 20:14 boinc_mmap_file
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 11670 Feb 25 20:14 runtime_log.err
[2025-02-25 20:14:06] -rw-r--r-- 1 boincer umatlas 26190 Feb 25 20:14 stderr.txt
[2025-02-25 20:14:06] No HITS result produced
[2025-02-25 20:14:06] *** Contents of shared directory: ***
[2025-02-25 20:14:06] total 336912
[2025-02-25 20:14:06] -rw-r--r-- 3 boincer umatlas 344467698 Feb 25 15:13 ATLAS.root_0
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 503554 Feb 25 15:13 input.tar.gz
[2025-02-25 20:14:06] -rw-r--r-- 2 boincer umatlas 17569 Feb 25 15:13 start_atlas.sh
20:14:08 (63493): run_atlas exited; CPU time 38.442939
20:14:08 (63493): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>xUNNDme4F76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA5wKDmEkCVZm_1_r1050806318_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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