Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-25 20:47:21 (8852): Detected: vboxwrapper 26206
2025-02-25 20:47:21 (8852): Detected: BOINC client v7.16.11
2025-02-25 20:47:23 (8852): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-02-25 20:47:23 (8852): Successfully copied 'init_data.xml' to the shared directory.
2025-02-25 20:47:23 (8852): Create VM. (boinc_40ff78f558460bd6, slot#0)
2025-02-25 20:47:24 (8852): Setting Memory Size for VM. (4400MB)
2025-02-25 20:47:24 (8852): Setting CPU Count for VM. (4)
2025-02-25 20:47:25 (8852): Setting Chipset Options for VM.
2025-02-25 20:47:25 (8852): Setting Graphics Controller Options for VM.
2025-02-25 20:47:25 (8852): Setting Boot Options for VM.
2025-02-25 20:47:25 (8852): Setting Network Configuration for NAT.
2025-02-25 20:47:26 (8852): Enabling VM Network Access.
2025-02-25 20:47:26 (8852): Disabling USB Support for VM.
2025-02-25 20:47:26 (8852): Disabling COM Port Support for VM.
2025-02-25 20:47:27 (8852): Disabling LPT Port Support for VM.
2025-02-25 20:47:27 (8852): Disabling Audio Support for VM.
2025-02-25 20:47:27 (8852): Disabling Clipboard Support for VM.
2025-02-25 20:47:27 (8852): Disabling Drag and Drop Support for VM.
2025-02-25 20:47:28 (8852): Adding storage controller(s) to VM.
2025-02-25 20:47:28 (8852): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-25 20:47:31 (8852): Adding VirtualBox Guest Additions to VM.
2025-02-25 20:47:31 (8852): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-25 20:47:32 (8852): forwarding host port 53850 to guest port 80
2025-02-25 20:47:32 (8852): Enabling remote desktop for VM.
2025-02-25 20:47:33 (8852): Enabling shared directory for VM.
2025-02-25 20:47:33 (8852): Starting VM using VBoxManage interface. (boinc_40ff78f558460bd6, slot#0)
2025-02-25 20:47:41 (8852): Successfully started VM. (PID = '3344')
2025-02-25 20:47:41 (8852): Reporting VM Process ID to BOINC.
2025-02-25 20:47:41 (8852): Guest Log: BIOS: VirtualBox 7.0.12
2025-02-25 20:47:41 (8852): Guest Log: CPUID EDX: 0x178bfbff
2025-02-25 20:47:41 (8852): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-25 20:47:41 (8852): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-25 20:47:41 (8852): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-25 20:47:41 (8852): Detected: Web Application Enabled (http://localhost:53850)
2025-02-25 20:47:41 (8852): Detected: Remote Desktop Enabled (localhost:53851)
2025-02-25 20:47:42 (8852): VM state change detected. (old = 'running', new = 'paused')
2025-02-25 20:47:50 (8852): Preference change detected
2025-02-25 20:47:50 (8852): Setting CPU throttle for VM. (100%)
2025-02-25 20:47:50 (8852): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-25 20:47:51 (8852): VM state change detected. (old = 'paused', new = 'running')
2025-02-25 20:47:52 (8852): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-25 20:47:52 (8852): Guest Log: BIOS: Booting from Hard Disk...
2025-02-25 20:47:55 (8852): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-25 20:47:55 (8852): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-25 20:47:55 (8852): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-25 20:48:02 (8852): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-25 20:48:02 (8852): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-25 20:48:13 (8852): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000244 main     Log opened 2025-02-25T20:48:01.109119000Z
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000420 main     OS Product: Linux
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000473 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000521 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000562 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000563 main     Process ID: 1303
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.000565 main     Package type: LINUX_64BITS_GENERIC
2025-02-25 20:48:13 (8852): Guest Log: 00:00:00.001889 main     5.2.32 r132073 started. Verbose level = 0
2025-02-25 20:48:13 (8852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-25 20:48:13 (8852): Guest Log: [INFO] Mounting shared directory
2025-02-25 20:48:13 (8852): Guest Log: [INFO] Checking for init_data.xml
2025-02-25 20:48:23 (8852): Guest Log: 00:00:10.004939 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 578 916 776 000ns (GuestNow=1 740 512 902 195 920 000 ns GuestLast=1 740 516 481 112 696 000 ns fSetTimeLastLoop=true )
2025-02-25 20:49:37 (8852): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-25 20:49:37 (8852): Guest Log: [INFO] Detected branch: prod
2025-02-25 20:49:37 (8852): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-25 20:49:37 (8852): Guest Log: Copying input files
2025-02-25 20:49:40 (8852): Guest Log: Copied input files into RunAtlas.
2025-02-25 20:49:40 (8852): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-25 20:49:40 (8852): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-25 20:49:40 (8852): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-25 20:49:40 (8852): Guest Log: Further information can be found at the LHC@home message board.
2025-02-25 20:51:37 (8852): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-25 20:51:38 (8852): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-25 20:51:38 (8852): Guest Log: 2.6.3.0 1616 2 30144 143050 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-25 20:51:39 (8852): Guest Log: copied the webapp to /var/www
2025-02-25 20:51:39 (8852): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-25 20:51:39 (8852): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-25 20:51:39 (8852): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-25 20:51:39 (8852): Guest Log:  *** Starting ATLAS job. (PandaID=6530793198 taskID=43401137) ***
2025-02-25 20:59:57 (8852): Guest Log:  *** Job finished ***
2025-02-25 20:59:57 (8852): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:47,337 | INFO     | [job] control thread has finished
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:47,339 | INFO     | [job] create_data_payload thread has finished
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:49,238 | INFO     | [data] queue_monitor thread has finished
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:49,338 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140713368876864)>', '<ExcThread(monitor, started 140712775505664)>']
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:49,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:49,700 | INFO     | [monitor] control thread has ended
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,345 | INFO     | all workflow threads have been joined
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,346 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,347 | INFO     | traces error code: 0
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,510 [wrapper] ==== pilot stdout END ====
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,516 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,521 [wrapper] pilotpid: 5992
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,528 [wrapper] Pilot exit status: 0
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,861 [wrapper] pandaids: 6530793198
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,953 [wrapper] cleanup supervisor_pilot  5998 5993
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,967 [wrapper] Test setup, not cleaning
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,980 [wrapper] apfmon messages muted
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,986 [wrapper] ==== wrapper stdout END ====
2025-02-25 20:59:57 (8852): Guest Log: 2025-02-25 19:59:54,992 [wrapper] ==== wrapper stderr END ====
2025-02-25 20:59:57 (8852): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 20:59:57 (8852): Guest Log:     "exeErrorCode": 65,
2025-02-25 20:59:57 (8852): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-02-25 20:59:57 (8852): Guest Log:     "pilotErrorCode": 1305,
2025-02-25 20:59:57 (8852): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-25 19:57:32,022 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-02-25 20:59:57 (8852): Guest Log:  *** Listing of results directory ***
2025-02-25 20:59:57 (8852): Guest Log: total 3844
2025-02-25 20:59:57 (8852): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 25 19:07 pilot3.tar.gz
2025-02-25 20:59:57 (8852): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 25 19:20 queuedata.json
2025-02-25 20:59:57 (8852): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 25 19:20 runpilot2-wrapper.sh
2025-02-25 20:59:57 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas    7973 Feb 25 19:49 init_data.xml
2025-02-25 20:59:57 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas  503558 Feb 25 19:49 input.tar.gz
2025-02-25 20:59:57 (8852): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 25 19:49 start_atlas.sh
2025-02-25 20:59:57 (8852): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 25 19:49 EVNT.43401135._000085.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 20:59:57 (8852): Guest Log: -rw-r--r--. 1 atlas atlas    2558 Feb 25 19:51 pandaJob.out
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas     424 Feb 25 19:51 setup.sh.local
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas  987482 Feb 25 19:54 agis_schedconf.cvmfs.json
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas 1573632 Feb 25 19:54 agis_ddmendpoints.agis.ALL.json
2025-02-25 20:59:57 (8852): Guest Log: drwx------. 4 atlas atlas    4096 Feb 25 19:54 pilot3
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas    1005 Feb 25 19:57 memory_monitor_summary.json
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas   21096 Feb 25 19:57 log.43401137._002038.job.log.tgz.1
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas      95 Feb 25 19:59 pilot_heartbeat.json
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas    8439 Feb 25 19:59 heartbeat.json
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas    4275 Feb 25 19:59 pilotlog.txt
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas   82454 Feb 25 19:59 log.43401137._002038.job.log.1
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas     188 Feb 25 19:59 output.list
2025-02-25 20:59:57 (8852): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 25 19:59 runtime_log
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas  122880 Feb 25 19:59 result.tar.gz
2025-02-25 20:59:57 (8852): Guest Log: -rw-r--r--. 1 atlas atlas   10815 Feb 25 19:59 runtime_log.err
2025-02-25 20:59:57 (8852): Guest Log: -rw-------. 1 atlas atlas     651 Feb 25 19:59 f6SKDmCfF76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm22wKDm3GThLn.diag
2025-02-25 20:59:57 (8852): Guest Log: Looking for outputfile HITS.43401137._002038.pool.root.1
2025-02-25 20:59:57 (8852): Guest Log: No HITS file was produced
2025-02-25 20:59:57 (8852): Guest Log: Successfully finished the ATLAS job!
2025-02-25 20:59:57 (8852): Guest Log: Copying the results back to the shared directory!
2025-02-25 20:59:57 (8852): Guest Log:  *** Contents of shared directory: ***
2025-02-25 20:59:57 (8852): Guest Log: total 248960
2025-02-25 20:59:57 (8852): Guest Log: -rwxrwxrwx. 1 root root 254277581 Feb 25 19:47 ATLAS.root_0
2025-02-25 20:59:57 (8852): Guest Log: -rwxrwxrwx. 1 root root      7973 Feb 25 19:47 init_data.xml
2025-02-25 20:59:57 (8852): Guest Log: -rwxrwxrwx. 1 root root    503558 Feb 25 19:36 input.tar.gz
2025-02-25 20:59:57 (8852): Guest Log: -rwxrwxrwx. 1 root root    122880 Feb 25 19:59 result.tar.gz
2025-02-25 20:59:57 (8852): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 25 19:36 start_atlas.sh
2025-02-25 20:59:57 (8852): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 20:59:57 (8852): VM Completion File Detected.
2025-02-25 20:59:57 (8852): Powering off VM.
2025-02-25 20:59:58 (8852): Successfully stopped VM.
2025-02-25 20:59:58 (8852): Deregistering VM. (boinc_40ff78f558460bd6, slot#0)
2025-02-25 20:59:58 (8852): Removing network bandwidth throttle group from VM.
2025-02-25 20:59:58 (8852): Removing VM from VirtualBox.
21:00:04 (8852): called boinc_finish(0)

</stderr_txt>
]]>

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