Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:12:31 (25217): wrapper (7.7.26015): starting
11:12:31 (25217): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 11:12:31] Arguments: --nthreads 12
[2025-02-25 11:12:31] Threads: 12
[2025-02-25 11:12:31] Checking for CVMFS
[2025-02-25 11:12:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 11:12:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 11:12:31] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 11:12:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 11:12:31] 2.11.2.0 10300 292600 151972 143043 2 58 19459778 20275200 1 130560 0 24115638 99.986 7704624 40790 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 11:12:31] CVMFS is ok
[2025-02-25 11:12:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 11:12:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 11:12:31] Further information can be found at the LHC@home message board.
[2025-02-25 11:12:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 11:12:31] Checking for apptainer binary...
[2025-02-25 11:12:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 11:12:31] Running /usr/bin/apptainer --version
[2025-02-25 11:12:31] apptainer version 1.3.2-1.el7
[2025-02-25 11:12:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 11:12:33] c-205-30.aglt2.org
[2025-02-25 11:12:33] apptainer works
[2025-02-25 11:12:33] Set ATHENA_PROC_NUMBER=12
[2025-02-25 11:12:33] Set ATHENA_CORE_NUMBER=12
[2025-02-25 11:12:33] Starting ATLAS job with PandaID=6530459458
[2025-02-25 11:12:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 12:36:05]  *** The last 200 lines of the pilot log: ***
[2025-02-25 12:36:05]  is_altstaged=None
[2025-02-25 12:36:05]  is_tar=False
[2025-02-25 12:36:05]  lfn=log.43401121._002130.job.log.tgz.1
[2025-02-25 12:36:05]  mtime=0
[2025-02-25 12:36:05]  protocol_id=None
[2025-02-25 12:36:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 12:36:05]  replicas=None
[2025-02-25 12:36:05]  scope=mc23_13p6TeV
[2025-02-25 12:36:05]  status=None
[2025-02-25 12:36:05]  status_code=0
[2025-02-25 12:36:05]  storage_token=
[2025-02-25 12:36:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530459458/log.43401121._002130.job.log.tgz.1
[2025-02-25 12:36:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/27/log.43401121._002130.job.log.tgz.1
[2025-02-25 12:36:05]  workdir=None
[2025-02-25 12:36:05] ]
[2025-02-25 12:36:05] 2025-02-25 17:35:39,707 | INFO     | transferring file log.43401121._002130.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530459458/log.43401121._002130.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 12:36:05] 2025-02-25 17:35:39,707 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530459458/log.43401121._002130.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401121._002130.job
[2025-02-25 12:36:05] 2025-02-25 17:35:39,726 | INFO     | adding to output.list: log.43401121._002130.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/90/27/log.43401121._002130.job.log.tg
[2025-02-25 12:36:05] 2025-02-25 17:35:39,727 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 12:36:05] 2025-02-25 17:35:39,728 | INFO     | summary of transferred files:
[2025-02-25 12:36:05] 2025-02-25 17:35:39,728 | INFO     |  -- lfn=log.43401121._002130.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 12:36:05] 2025-02-25 17:35:39,728 | INFO     | stage-out finished correctly
[2025-02-25 12:36:05] 2025-02-25 17:35:40,323 | INFO     | monitor loop #364: job 0:6530459458 is in state 'finished'
[2025-02-25 12:36:05] 2025-02-25 17:35:40,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,260 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 12:36:05] 2025-02-25 17:35:41,344 | INFO     | job 6530459458 has state=finished
[2025-02-25 12:36:05] 2025-02-25 17:35:41,344 | INFO     | preparing for final server update for job 6530459458 in state='finished'
[2025-02-25 12:36:05] 2025-02-25 17:35:41,412 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,412 | INFO     | this job has now completed (state=finished)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,413 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,413 | INFO     | log transfer has been attempted: DONE
[2025-02-25 12:36:05] 2025-02-25 17:35:41,413 | INFO     | job 6530459458 has finished - writing final server update
[2025-02-25 12:36:05] 2025-02-25 17:35:41,413 | INFO     | total number of processed events: 400 (read)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,415 | INFO     | executing command: lscpu
[2025-02-25 12:36:05] 2025-02-25 17:35:41,441 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 12:36:05] 2025-02-25 17:35:41,455 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 12:36:05] 2025-02-25 17:35:42,832 | INFO     | monitor loop #365: job 0:6530459458 is in state 'finished'
[2025-02-25 12:36:05] 2025-02-25 17:35:42,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 12:36:05] 2025-02-25 17:35:45,365 | INFO     | monitor loop #366: job 0:6530459458 is in state 'finished'
[2025-02-25 12:36:05] 2025-02-25 17:35:45,365 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,460 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 12:36:05] 2025-02-25 17:35:46,461 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530459458/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,462 | INFO     | extracted standard info from prmon json
[2025-02-25 12:36:05] 2025-02-25 17:35:46,462 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 12:36:05] 2025-02-25 17:35:46,462 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 12:36:05] 2025-02-25 17:35:46,463 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 12:36:05] 2025-02-25 17:35:46,463 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 12:36:05] 2025-02-25 17:35:46,466 | INFO     | fitting pss+swap vs Time
[2025-02-25 12:36:05] 2025-02-25 17:35:46,466 | INFO     | model: linear, x: [1740500300.0, 1740500361.0, 1740500422.0, 1740500483.0, 1740500544.0, 1740500605.0, 1740500666.0, 1740500727.0, 1740500788.0, 1740500849.0, 1740
[2025-02-25 12:36:05] 2025-02-25 17:35:46,466 | INFO     | sum of square deviations: 125630262.5
[2025-02-25 12:36:05] 2025-02-25 17:35:46,467 | INFO     | sum of deviations: 27848952870.999992
[2025-02-25 12:36:05] 2025-02-25 17:35:46,467 | INFO     | mean x: 1740502526.5
[2025-02-25 12:36:05] 2025-02-25 17:35:46,467 | INFO     | mean y: 2566199.4594594594
[2025-02-25 12:36:05] 2025-02-25 17:35:46,467 | INFO     | -- intersect: -385821453171.3105
[2025-02-25 12:36:05] 2025-02-25 17:35:46,468 | INFO     | intersect: -385821453171.3105
[2025-02-25 12:36:05] 2025-02-25 17:35:46,468 | INFO     | chi2: 2.936018027997122
[2025-02-25 12:36:05] 2025-02-25 17:35:46,468 | INFO     | -- intersect: -385821453171.3105
[2025-02-25 12:36:05] 2025-02-25 17:35:46,468 | INFO     | current memory leak: 221.67 B/s (using 74 data points, chi2=2.94)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,469 | INFO     | ..............................
[2025-02-25 12:36:05] 2025-02-25 17:35:46,469 | INFO     | . Timing measurements:
[2025-02-25 12:36:05] 2025-02-25 17:35:46,469 | INFO     | . get job = 0 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,469 | INFO     | . initial setup = 2 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | . payload setup = 7 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | . stage-in = 0 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | . payload execution = 4945 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | . stage-out = 0 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | . log creation = 0 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,470 | INFO     | ..............................
[2025-02-25 12:36:05] 2025-02-25 17:35:46,554 | INFO     | 
[2025-02-25 12:36:05] 2025-02-25 17:35:46,554 | INFO     | job summary report
[2025-02-25 12:36:05] 2025-02-25 17:35:46,554 | INFO     | --------------------------------------------------
[2025-02-25 12:36:05] 2025-02-25 17:35:46,554 | INFO     | PanDA job id: 6530459458
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | task id: 43401121
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | errors: (none)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | pilot state: finished 
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | transexitcode: 0
[2025-02-25 12:36:05] 2025-02-25 17:35:46,555 | INFO     | exeerrorcode: 0
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | exeerrordiag: 
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | exitcode: 0
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | exitmsg: OK
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | cpuconsumptiontime: 47082 s
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | nevents: 400
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | neventsw: 0
[2025-02-25 12:36:05] 2025-02-25 17:35:46,556 | INFO     | pid: 2968
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | pgrp: 2968
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | corecount: 12
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | event service: False
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | sizes: {0: 2376770, 1: 2376969, 6: 2377175, 11: 2377203, 4956: 2403285, 4957: 2403284, 4958: 2412409, 4959: 2412465, 4965: 2412635}
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | --------------------------------------------------
[2025-02-25 12:36:05] 2025-02-25 17:35:46,557 | INFO     | 
[2025-02-25 12:36:05] 2025-02-25 17:35:46,558 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 12:36:05] 2025-02-25 17:35:46,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 12:36:05] 2025-02-25 17:35:46,583 | INFO     | job 6530459458 has completed (purged errors)
[2025-02-25 12:36:05] 2025-02-25 17:35:46,583 | INFO     | overall cleanup function is called
[2025-02-25 12:36:05] 2025-02-25 17:35:47,592 | INFO     | --- collectZombieJob: --- 10, [2968]
[2025-02-25 12:36:05] 2025-02-25 17:35:47,592 | INFO     | zombie collector waiting for pid 2968
[2025-02-25 12:36:05] 2025-02-25 17:35:47,592 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 12:36:05] 2025-02-25 17:35:47,592 | INFO     | collected zombie processes
[2025-02-25 12:36:05] 2025-02-25 17:35:47,593 | INFO     | will attempt to kill all subprocesses of pid=2968
[2025-02-25 12:36:05] 2025-02-25 17:35:47,654 | INFO     | process IDs to be killed: [2968] (in reverse order)
[2025-02-25 12:36:05] 2025-02-25 17:35:47,705 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 12:36:05] 2025-02-25 17:35:47,705 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 12:36:05] 2025-02-25 17:35:47,709 | INFO     | did not find any defunct processes belonging to 2968
[2025-02-25 12:36:05] 2025-02-25 17:35:47,711 | INFO     | did not find any defunct processes belonging to 2968
[2025-02-25 12:36:05] 2025-02-25 17:35:47,711 | INFO     | ready for new job
[2025-02-25 12:36:05] 2025-02-25 17:35:47,711 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 12:36:05] 2025-02-25 17:35:47,712 | INFO     | **************************************
[2025-02-25 12:36:05] 2025-02-25 17:35:47,713 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 12:36:05] 2025-02-25 17:35:47,713 | INFO     | **************************************
[2025-02-25 12:36:05] 2025-02-25 17:35:47,713 | INFO     | 
[2025-02-25 12:36:05] 2025-02-25 17:35:47,713 | INFO     | architecture information:
[2025-02-25 12:36:05] 2025-02-25 17:35:47,714 | INFO     | executing command: cat /etc/os-release
[2025-02-25 12:36:05] 2025-02-25 17:35:47,796 | INFO     | cat /etc/os-release:
[2025-02-25 12:36:05] NAME="CentOS Linux"
[2025-02-25 12:36:05] VERSION="7 (Core)"
[2025-02-25 12:36:05] ID="centos"
[2025-02-25 12:36:05] ID_LIKE="rhel fedora"
[2025-02-25 12:36:05] VERSION_ID="7"
[2025-02-25 12:36:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 12:36:05] ANSI_COLOR="0;31"
[2025-02-25 12:36:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 12:36:05] HOME_URL="https://www.centos.org/"
[2025-02-25 12:36:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 12:36:05] 
[2025-02-25 12:36:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 12:36:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 12:36:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 12:36:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 12:36:05] 
[2025-02-25 12:36:05] 2025-02-25 17:35:47,796 | INFO     | **************************************
[2025-02-25 12:36:05] 2025-02-25 17:35:48,299 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 12:36:05] 2025-02-25 17:35:48,316 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-02-25 12:36:05] 2025-02-25 17:35:48,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 12:36:05] 2025-02-25 17:35:48,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 12:36:05] 2025-02-25 17:35:48,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 12:36:05] 2025-02-25 17:35:48,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:36:05] 2025-02-25 17:35:48,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 12:36:05] 2025-02-25 17:35:48,318 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 12:36:05] 2025-02-25 17:35:48,318 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 12:36:05] 2025-02-25 17:35:48,318 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 12:36:05] 2025-02-25 17:35:48,318 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 12:36:05] 2025-02-25 17:35:48,333 | INFO     | all data control threads have been joined
[2025-02-25 12:36:05] 2025-02-25 17:35:48,873 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:36:05] 2025-02-25 17:35:48,873 | INFO     | aborting loop
[2025-02-25 12:36:05] 2025-02-25 17:35:48,878 | INFO     | all payload control threads have been joined
[2025-02-25 12:36:05] 2025-02-25 17:35:49,181 | INFO     | all job control threads have been joined
[2025-02-25 12:36:05] 2025-02-25 17:35:49,322 | INFO     | [job] retrieve thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,322 | INFO     | [job] queue monitor thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,338 | INFO     | [data] control thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,377 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,442 | INFO     | [payload] validate_post thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,769 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,788 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,878 | INFO     | [job] job monitor thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,883 | INFO     | [payload] control thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:49,899 | INFO     | [data] copytool_in thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:50,186 | INFO     | [job] control thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:50,323 | INFO     | [data] copytool_out thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:50,328 | INFO     | [payload] failed_post thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:50,667 | INFO     | [job] validate thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:52,322 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:35:59,178 | INFO     | job.realtimelogging is not enabled
[2025-02-25 12:36:05] 2025-02-25 17:36:00,183 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 12:36:05] 2025-02-25 17:36:00,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139741601523520)>', '<ExcThread(monitor, started 139741030762240)>']
[2025-02-25 12:36:05] 2025-02-25 17:36:01,385 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 12:36:05] 2025-02-25 17:36:01,385 | INFO     | [monitor] control thread has ended
[2025-02-25 12:36:05] 2025-02-25 17:36:05,445 | INFO     | all workflow threads have been joined
[2025-02-25 12:36:05] 2025-02-25 17:36:05,445 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 12:36:05] 2025-02-25 17:36:05,445 | INFO     | traces error code: 0
[2025-02-25 12:36:05] 2025-02-25 17:36:05,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 12:36:05] 2025-02-25 17:36:05,536 [wrapper] ==== pilot stdout END ====
[2025-02-25 12:36:05] 2025-02-25 17:36:05,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 12:36:05] 2025-02-25 17:36:05,543 [wrapper] pilotpid: 28842
[2025-02-25 12:36:05] 2025-02-25 17:36:05,547 [wrapper] Pilot exit status: 0
[2025-02-25 12:36:05] 2025-02-25 17:36:05,562 [wrapper] pandaids: 6530459458
[2025-02-25 12:36:05] 2025-02-25 17:36:05,602 [wrapper] cleanup supervisor_pilot 28118 28843
[2025-02-25 12:36:05] 2025-02-25 17:36:05,606 [wrapper] Test setup, not cleaning
[2025-02-25 12:36:05] 2025-02-25 17:36:05,613 [wrapper] apfmon messages muted
[2025-02-25 12:36:05] 2025-02-25 17:36:05,616 [wrapper] ==== wrapper stdout END ====
[2025-02-25 12:36:05] 2025-02-25 17:36:05,619 [wrapper] ==== wrapper stderr END ====
[2025-02-25 12:36:05]  *** Error codes and diagnostics ***
[2025-02-25 12:36:05]     "exeErrorCode": 0,
[2025-02-25 12:36:05]     "exeErrorDiag": "",
[2025-02-25 12:36:05]     "pilotErrorCode": 0,
[2025-02-25 12:36:05]     "pilotErrorDiag": "",
[2025-02-25 12:36:05]  *** Listing of results directory ***
[2025-02-25 12:36:05] total 435868
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 09:02 pilot3.tar.gz
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 09:44 queuedata.json
[2025-02-25 12:36:05] -rwx------ 1 boincer umatlas     35865 Feb 25 09:44 runpilot2-wrapper.sh
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas       100 Feb 25 11:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 12:36:05] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 11:12 run_atlas
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas       105 Feb 25 11:12 job.xml
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas 252812277 Feb 25 11:12 EVNT.43401119._000086.pool.root.1
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 11:12 start_atlas.sh
[2025-02-25 12:36:05] drwxrwx--x 2 boincer umatlas      4096 Feb 25 11:12 shared
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas    503550 Feb 25 11:12 input.tar.gz
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas         0 Feb 25 11:12 boinc_lockfile
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas      2540 Feb 25 11:12 pandaJob.out
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas       424 Feb 25 11:12 setup.sh.local
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas    988282 Feb 25 11:12 agis_schedconf.cvmfs.json
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas   1577983 Feb 25 11:12 agis_ddmendpoints.agis.ALL.json
[2025-02-25 12:36:05] drwx------ 4 boincer umatlas      4096 Feb 25 11:12 pilot3
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas      5867 Feb 25 12:29 init_data.xml
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas 188083405 Feb 25 12:35 HITS.43401121._002130.pool.root.1
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas       529 Feb 25 12:35 boinc_task_state.xml
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas      1047 Feb 25 12:35 memory_monitor_summary.json
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas    353190 Feb 25 12:35 log.43401121._002130.job.log.tgz.1
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 12:35 boinc_mmap_file
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas        27 Feb 25 12:35 wrapper_checkpoint.txt
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas      7763 Feb 25 12:35 heartbeat.json
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas        95 Feb 25 12:35 pilot_heartbeat.json
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas      4410 Feb 25 12:36 pilotlog.txt
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas    465267 Feb 25 12:36 log.43401121._002130.job.log.1
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas       357 Feb 25 12:36 output.list
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas       620 Feb 25 12:36 runtime_log
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas    839680 Feb 25 12:36 result.tar.gz
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas       659 Feb 25 12:36 WQEMDmYLB76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmg0fKDmfBXjMo.diag
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 12:36 runtime_log.err
[2025-02-25 12:36:05] -rw-r--r-- 1 boincer umatlas     21549 Feb 25 12:36 stderr.txt
[2025-02-25 12:36:05] HITS file was successfully produced:
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas 188083405 Feb 25 12:35 shared/HITS.pool.root.1
[2025-02-25 12:36:05]  *** Contents of shared directory: ***
[2025-02-25 12:36:05] total 431896
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas 252812277 Feb 25 11:12 ATLAS.root_0
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 11:12 start_atlas.sh
[2025-02-25 12:36:05] -rw-r--r-- 2 boincer umatlas    503550 Feb 25 11:12 input.tar.gz
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas 188083405 Feb 25 12:35 HITS.pool.root.1
[2025-02-25 12:36:05] -rw------- 1 boincer umatlas    839680 Feb 25 12:36 result.tar.gz
12:36:07 (25217): run_atlas exited; CPU time 47003.367168
12:36:07 (25217): called boinc_finish(0)

</stderr_txt>
]]>

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