Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:25:20 (3277506): wrapper (7.7.26015): starting
11:25:20 (3277506): wrapper: running run_atlas (--nthreads 9)
[2025-02-25 11:25:20] Arguments: --nthreads 9
[2025-02-25 11:25:20] Threads: 9
[2025-02-25 11:25:20] Checking for CVMFS
[2025-02-25 11:25:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 11:25:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 11:25:21] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 11:25:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 11:25:21] 2.11.5.0 3813485 16279 226596 143045 0 201 15988341 37641216 15165 130560 0 1202705 97.939 5327476 37050 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-25 11:25:21] CVMFS is ok
[2025-02-25 11:25:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 11:25:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 11:25:21] Further information can be found at the LHC@home message board.
[2025-02-25 11:25:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 11:25:21] Checking for apptainer binary...
[2025-02-25 11:25:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 11:25:21] Running /usr/bin/apptainer --version
[2025-02-25 11:25:21] apptainer version 1.3.6-1.el9
[2025-02-25 11:25:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 11:25:21] c6-1-26-4.aglt2.org
[2025-02-25 11:25:21] apptainer works
[2025-02-25 11:25:21] Set ATHENA_PROC_NUMBER=9
[2025-02-25 11:25:21] Set ATHENA_CORE_NUMBER=9
[2025-02-25 11:25:21] Starting ATLAS job with PandaID=6530434824
[2025-02-25 11:25:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 12:56:53]  *** The last 200 lines of the pilot log: ***
[2025-02-25 12:56:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-02-25 12:56:53]  is_altstaged=None
[2025-02-25 12:56:53]  is_tar=False
[2025-02-25 12:56:53]  lfn=log.43401163._000578.job.log.tgz.1
[2025-02-25 12:56:53]  mtime=0
[2025-02-25 12:56:53]  protocol_id=None
[2025-02-25 12:56:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 12:56:53]  replicas=None
[2025-02-25 12:56:53]  scope=mc23_13p6TeV
[2025-02-25 12:56:53]  status=None
[2025-02-25 12:56:53]  status_code=0
[2025-02-25 12:56:53]  storage_token=
[2025-02-25 12:56:53]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6530434824/log.43401163._000578.job.log.tgz.1
[2025-02-25 12:56:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/4d/log.43401163._000578.job.log.tgz.1
[2025-02-25 12:56:53]  workdir=None
[2025-02-25 12:56:53] ]
[2025-02-25 12:56:53] 2025-02-25 17:56:32,473 | INFO     | transferring file log.43401163._000578.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6530434824/log.43401163._000578.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 12:56:53] 2025-02-25 17:56:32,473 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6530434824/log.43401163._000578.job.log.tgz.1 /tmp/boinchome/slots/2/log.43401163._000578.job
[2025-02-25 12:56:53] 2025-02-25 17:56:32,501 | INFO     | adding to output.list: log.43401163._000578.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b8/4d/log.43401163._000578.job.log.tg
[2025-02-25 12:56:53] 2025-02-25 17:56:32,502 | WARNING  | process 3292625 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 12:56:53] 2025-02-25 17:56:32,502 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6530434824/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 12:56:53] 2025-02-25 17:56:32,503 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 12:56:53] 2025-02-25 17:56:32,509 | INFO     | summary of transferred files:
[2025-02-25 12:56:53] 2025-02-25 17:56:32,510 | INFO     |  -- lfn=log.43401163._000578.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 12:56:53] 2025-02-25 17:56:32,511 | INFO     | stage-out finished correctly
[2025-02-25 12:56:53] 2025-02-25 17:56:32,599 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 12:56:53] 2025-02-25 17:56:32,686 | INFO     | number of running child processes to parent process 3292625: 1
[2025-02-25 12:56:53] 2025-02-25 17:56:32,686 | INFO     | maximum number of monitored processes: 6
[2025-02-25 12:56:53] 2025-02-25 17:56:34,364 | INFO     | job 6530434824 has state=finished
[2025-02-25 12:56:53] 2025-02-25 17:56:34,365 | INFO     | preparing for final server update for job 6530434824 in state='finished'
[2025-02-25 12:56:53] 2025-02-25 17:56:34,365 | INFO     | this job has now completed (state=finished)
[2025-02-25 12:56:53] 2025-02-25 17:56:34,365 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 12:56:53] 2025-02-25 17:56:34,365 | INFO     | log transfer has been attempted: DONE
[2025-02-25 12:56:53] 2025-02-25 17:56:34,366 | INFO     | job 6530434824 has finished - writing final server update
[2025-02-25 12:56:53] 2025-02-25 17:56:34,366 | INFO     | total number of processed events: 400 (read)
[2025-02-25 12:56:53] 2025-02-25 17:56:34,381 | INFO     | executing command: lscpu
[2025-02-25 12:56:53] 2025-02-25 17:56:34,434 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2025-02-25 12:56:53] 2025-02-25 17:56:34,466 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 12:56:53] 2025-02-25 17:56:35,189 | INFO     | monitor loop #406: job 0:6530434824 is in state 'finished'
[2025-02-25 12:56:53] 2025-02-25 17:56:35,189 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 12:56:53] 2025-02-25 17:56:37,692 | INFO     | monitor loop #407: job 0:6530434824 is in state 'finished'
[2025-02-25 12:56:53] 2025-02-25 17:56:37,692 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,359 | INFO     | CPU arch script returned: x86-64-v4
[2025-02-25 12:56:53] 2025-02-25 17:56:38,359 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6530434824/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,360 | INFO     | extracted standard info from prmon json
[2025-02-25 12:56:53] 2025-02-25 17:56:38,360 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 12:56:53] 2025-02-25 17:56:38,360 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 12:56:53] 2025-02-25 17:56:38,361 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 12:56:53] 2025-02-25 17:56:38,361 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 12:56:53] 2025-02-25 17:56:38,363 | INFO     | fitting pss+swap vs Time
[2025-02-25 12:56:53] 2025-02-25 17:56:38,363 | INFO     | model: linear, x: [1740501062.0, 1740501123.0, 1740501184.0, 1740501245.0, 1740501306.0, 1740501367.0, 1740501428.0, 1740501489.0, 1740501550.0, 1740501611.0, 1740
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | sum of square deviations: 177275882.0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | sum of deviations: 16372688530.000004
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | mean x: 1740503563.0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | mean y: 2189390.7710843375
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | -- intersect: -160745693518.3899
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | intersect: -160745693518.3899
[2025-02-25 12:56:53] 2025-02-25 17:56:38,364 | INFO     | chi2: 1.7147315586372873
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | -- intersect: -160745693518.3899
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | current memory leak: 92.36 B/s (using 83 data points, chi2=1.71)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | ..............................
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | . Timing measurements:
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | . get job = 0 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,365 | INFO     | . initial setup = 2 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | . payload setup = 5 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | . stage-in = 0 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | . payload execution = 5435 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | . stage-out = 0 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | . log creation = 0 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,366 | INFO     | ..............................
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | 
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | job summary report
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | --------------------------------------------------
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | PanDA job id: 6530434824
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | task id: 43401163
[2025-02-25 12:56:53] 2025-02-25 17:56:38,574 | INFO     | errors: (none)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | pilot state: finished 
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | transexitcode: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | exeerrorcode: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | exeerrordiag: 
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | exitcode: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | exitmsg: OK
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | cpuconsumptiontime: 35861 s
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | nevents: 400
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | neventsw: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | pid: 3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | pgrp: 3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | corecount: 9
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | event service: False
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | sizes: {0: 2376710, 1: 2376965, 5: 2377171, 11: 2377227, 5445: 2403742, 5446: 2412867, 5452: 2412981}
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | --------------------------------------------------
[2025-02-25 12:56:53] 2025-02-25 17:56:38,575 | INFO     | 
[2025-02-25 12:56:53] 2025-02-25 17:56:38,576 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-02-25 12:56:53] 2025-02-25 17:56:38,595 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,596 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,596 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,596 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,596 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,598 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 12:56:53] 2025-02-25 17:56:38,598 | INFO     | job 6530434824 has completed (purged errors)
[2025-02-25 12:56:53] 2025-02-25 17:56:38,598 | INFO     | overall cleanup function is called
[2025-02-25 12:56:53] 2025-02-25 17:56:39,606 | INFO     | --- collectZombieJob: --- 10, [3292625]
[2025-02-25 12:56:53] 2025-02-25 17:56:39,606 | INFO     | zombie collector waiting for pid 3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:39,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 12:56:53] 2025-02-25 17:56:39,606 | INFO     | collected zombie processes
[2025-02-25 12:56:53] 2025-02-25 17:56:39,607 | INFO     | will attempt to kill all subprocesses of pid=3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:39,743 | INFO     | process IDs to be killed: [3292625] (in reverse order)
[2025-02-25 12:56:53] 2025-02-25 17:56:39,847 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 12:56:53] 2025-02-25 17:56:39,847 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 12:56:53] 2025-02-25 17:56:39,860 | INFO     | did not find any defunct processes belonging to 3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:39,873 | INFO     | did not find any defunct processes belonging to 3292625
[2025-02-25 12:56:53] 2025-02-25 17:56:39,873 | INFO     | ready for new job
[2025-02-25 12:56:53] 2025-02-25 17:56:39,874 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 12:56:53] 2025-02-25 17:56:39,876 | INFO     | **************************************
[2025-02-25 12:56:53] 2025-02-25 17:56:39,877 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 12:56:53] 2025-02-25 17:56:39,877 | INFO     | **************************************
[2025-02-25 12:56:53] 2025-02-25 17:56:39,877 | INFO     | 
[2025-02-25 12:56:53] 2025-02-25 17:56:39,893 | INFO     | architecture information:
[2025-02-25 12:56:53] 2025-02-25 17:56:39,893 | INFO     | executing command: cat /etc/os-release
[2025-02-25 12:56:53] 2025-02-25 17:56:39,907 | INFO     | cat /etc/os-release:
[2025-02-25 12:56:53] NAME="CentOS Linux"
[2025-02-25 12:56:53] VERSION="7 (Core)"
[2025-02-25 12:56:53] ID="centos"
[2025-02-25 12:56:53] ID_LIKE="rhel fedora"
[2025-02-25 12:56:53] VERSION_ID="7"
[2025-02-25 12:56:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 12:56:53] ANSI_COLOR="0;31"
[2025-02-25 12:56:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 12:56:53] HOME_URL="https://www.centos.org/"
[2025-02-25 12:56:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 12:56:53] 
[2025-02-25 12:56:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 12:56:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 12:56:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 12:56:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 12:56:53] 
[2025-02-25 12:56:53] 2025-02-25 17:56:39,908 | INFO     | **************************************
[2025-02-25 12:56:53] 2025-02-25 17:56:40,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-02-25 12:56:53] 2025-02-25 17:56:40,426 | INFO     | sufficient remaining disk space (63736643584 B)
[2025-02-25 12:56:53] 2025-02-25 17:56:40,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 12:56:53] 2025-02-25 17:56:40,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 12:56:53] 2025-02-25 17:56:40,427 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:56:53] 2025-02-25 17:56:40,619 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 12:56:53] 2025-02-25 17:56:40,811 | INFO     | all payload control threads have been joined
[2025-02-25 12:56:53] 2025-02-25 17:56:41,201 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:56:53] 2025-02-25 17:56:41,201 | INFO     | aborting loop
[2025-02-25 12:56:53] 2025-02-25 17:56:41,405 | INFO     | all job control threads have been joined
[2025-02-25 12:56:53] 2025-02-25 17:56:41,426 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 12:56:53] 2025-02-25 17:56:41,426 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 12:56:53] 2025-02-25 17:56:41,426 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 12:56:53] 2025-02-25 17:56:41,431 | INFO     | [job] retrieve thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:41,432 | INFO     | [job] queue monitor thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:41,510 | INFO     | all data control threads have been joined
[2025-02-25 12:56:53] 2025-02-25 17:56:41,637 | INFO     | [data] copytool_in thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:41,676 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:41,787 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:41,816 | INFO     | [payload] control thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,067 | INFO     | [payload] failed_post thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,204 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,206 | INFO     | [job] job monitor thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,361 | INFO     | [payload] validate_post thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,372 | INFO     | [job] validate thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,411 | INFO     | [job] control thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,515 | INFO     | [data] control thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,565 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:42,625 | INFO     | [data] copytool_out thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:43,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 12:56:53] 2025-02-25 17:56:47,194 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 12:56:53] 2025-02-25 17:56:47,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140535973787456)>', '<ExcThread(monitor, started 140535356454656)>']
[2025-02-25 12:56:53] 2025-02-25 17:56:48,461 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 12:56:53] 2025-02-25 17:56:48,461 | INFO     | [monitor] control thread has ended
[2025-02-25 12:56:53] 2025-02-25 17:56:52,735 | INFO     | all workflow threads have been joined
[2025-02-25 12:56:53] 2025-02-25 17:56:52,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 12:56:53] 2025-02-25 17:56:52,736 | INFO     | traces error code: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:52,736 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 12:56:53] 2025-02-25 17:56:52,917 [wrapper] ==== pilot stdout END ====
[2025-02-25 12:56:53] 2025-02-25 17:56:52,919 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 12:56:53] 2025-02-25 17:56:52,923 [wrapper] pilotpid: 3282617
[2025-02-25 12:56:53] 2025-02-25 17:56:52,926 [wrapper] Pilot exit status: 0
[2025-02-25 12:56:53] 2025-02-25 17:56:52,935 [wrapper] pandaids: 6530434824
[2025-02-25 12:56:53] 2025-02-25 17:56:53,000 [wrapper] cleanup supervisor_pilot 4190847 3282618
[2025-02-25 12:56:53] 2025-02-25 17:56:53,003 [wrapper] Test setup, not cleaning
[2025-02-25 12:56:53] 2025-02-25 17:56:53,008 [wrapper] apfmon messages muted
[2025-02-25 12:56:53] 2025-02-25 17:56:53,010 [wrapper] ==== wrapper stdout END ====
[2025-02-25 12:56:53] 2025-02-25 17:56:53,013 [wrapper] ==== wrapper stderr END ====
[2025-02-25 12:56:53]  *** Error codes and diagnostics ***
[2025-02-25 12:56:53]     "exeErrorCode": 0,
[2025-02-25 12:56:53]     "exeErrorDiag": "",
[2025-02-25 12:56:53]     "pilotErrorCode": 0,
[2025-02-25 12:56:53]     "pilotErrorDiag": "",
[2025-02-25 12:56:53]  *** Listing of results directory ***
[2025-02-25 12:56:53] total 426764
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas    491065 Feb 25 09:02 pilot3.tar.gz
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas      5118 Feb 25 09:29 queuedata.json
[2025-02-25 12:56:53] -rwx------. 1 boincer umatlas     35865 Feb 25 09:29 runpilot2-wrapper.sh
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas       100 Feb 25 11:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 12:56:53] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 25 11:25 run_atlas
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas       105 Feb 25 11:25 job.xml
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas 248232899 Feb 25 11:25 EVNT.43401161._000024.pool.root.1
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas     17569 Feb 25 11:25 start_atlas.sh
[2025-02-25 12:56:53] drwxrwx--x. 2 boincer umatlas      4096 Feb 25 11:25 shared
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas    503549 Feb 25 11:25 input.tar.gz
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas         0 Feb 25 11:25 boinc_lockfile
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas      2538 Feb 25 11:25 pandaJob.out
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas       467 Feb 25 11:25 setup.sh.local
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas    988282 Feb 25 11:25 agis_schedconf.cvmfs.json
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas   1577983 Feb 25 11:25 agis_ddmendpoints.agis.ALL.json
[2025-02-25 12:56:53] drwx------. 4 boincer umatlas      4096 Feb 25 11:25 pilot3
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas       529 Feb 25 12:55 boinc_task_state.xml
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas 183266496 Feb 25 12:56 HITS.43401163._000578.pool.root.1
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas        95 Feb 25 12:56 pilot_heartbeat.json
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas      1041 Feb 25 12:56 memory_monitor_summary.json
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas    317466 Feb 25 12:56 log.43401163._000578.job.log.tgz.1
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas      7729 Feb 25 12:56 heartbeat.json
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas      6841 Feb 25 12:56 init_data.xml
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas        27 Feb 25 12:56 wrapper_checkpoint.txt
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas      8192 Feb 25 12:56 boinc_mmap_file
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas      4215 Feb 25 12:56 pilotlog.txt
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas    535111 Feb 25 12:56 log.43401163._000578.job.log.1
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas       357 Feb 25 12:56 output.list
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas       620 Feb 25 12:56 runtime_log
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas    870400 Feb 25 12:56 result.tar.gz
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas     11423 Feb 25 12:56 runtime_log.err
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas       653 Feb 25 12:56 b9vKDmX7A76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmciwKDmNbe1fn.diag
[2025-02-25 12:56:53] -rw-r--r--. 1 boincer umatlas     21533 Feb 25 12:56 stderr.txt
[2025-02-25 12:56:53] HITS file was successfully produced:
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas 183266496 Feb 25 12:56 shared/HITS.pool.root.1
[2025-02-25 12:56:53]  *** Contents of shared directory: ***
[2025-02-25 12:56:53] total 422760
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas 248232899 Feb 25 11:25 ATLAS.root_0
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas     17569 Feb 25 11:25 start_atlas.sh
[2025-02-25 12:56:53] -rw-r--r--. 2 boincer umatlas    503549 Feb 25 11:25 input.tar.gz
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas 183266496 Feb 25 12:56 HITS.pool.root.1
[2025-02-25 12:56:53] -rw-------. 1 boincer umatlas    870400 Feb 25 12:56 result.tar.gz
12:56:54 (3277506): run_atlas exited; CPU time 35779.826230
12:56:54 (3277506): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN