Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:44:50 (17927): wrapper (7.7.26015): starting
09:44:50 (17927): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 09:44:50] Arguments: --nthreads 12
[2025-02-25 09:44:50] Threads: 12
[2025-02-25 09:44:50] Checking for CVMFS
[2025-02-25 09:44:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 09:44:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 09:44:51] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 09:44:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 09:44:51] 2.11.2.0 2980 218484 193680 143041 2 56 11305449 20275201 1 130560 0 23685604 99.991 6467783 39472 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 09:44:51] CVMFS is ok
[2025-02-25 09:44:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 09:44:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 09:44:51] Further information can be found at the LHC@home message board.
[2025-02-25 09:44:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 09:44:51] Checking for apptainer binary...
[2025-02-25 09:44:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 09:44:51] Running /usr/bin/apptainer --version
[2025-02-25 09:44:51] apptainer version 1.3.2-1.el7
[2025-02-25 09:44:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 09:44:52] c-205-10.aglt2.org
[2025-02-25 09:44:52] apptainer works
[2025-02-25 09:44:52] Set ATHENA_PROC_NUMBER=12
[2025-02-25 09:44:52] Set ATHENA_CORE_NUMBER=12
[2025-02-25 09:44:52] Starting ATLAS job with PandaID=6530433781
[2025-02-25 09:44:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 11:03:08]  *** The last 200 lines of the pilot log: ***
[2025-02-25 11:03:08]  is_tar=False
[2025-02-25 11:03:08]  lfn=log.43401163._000333.job.log.tgz.1
[2025-02-25 11:03:08]  mtime=0
[2025-02-25 11:03:08]  protocol_id=None
[2025-02-25 11:03:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 11:03:08]  replicas=None
[2025-02-25 11:03:08]  scope=mc23_13p6TeV
[2025-02-25 11:03:08]  status=None
[2025-02-25 11:03:08]  status_code=0
[2025-02-25 11:03:08]  storage_token=
[2025-02-25 11:03:08]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530433781/log.43401163._000333.job.log.tgz.1
[2025-02-25 11:03:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/d7/log.43401163._000333.job.log.tgz.1
[2025-02-25 11:03:08]  workdir=None
[2025-02-25 11:03:08] ]
[2025-02-25 11:03:08] 2025-02-25 16:02:38,639 | INFO     | transferring file log.43401163._000333.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530433781/log.43401163._000333.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 11:03:08] 2025-02-25 16:02:38,639 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530433781/log.43401163._000333.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401163._000333.job
[2025-02-25 11:03:08] 2025-02-25 16:02:38,659 | INFO     | adding to output.list: log.43401163._000333.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/d7/log.43401163._000333.job.log.tg
[2025-02-25 11:03:08] 2025-02-25 16:02:38,660 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 11:03:08] 2025-02-25 16:02:38,660 | INFO     | summary of transferred files:
[2025-02-25 11:03:08] 2025-02-25 16:02:38,661 | INFO     |  -- lfn=log.43401163._000333.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 11:03:08] 2025-02-25 16:02:38,661 | INFO     | stage-out finished correctly
[2025-02-25 11:03:08] 2025-02-25 16:02:39,413 | INFO     | monitor loop #341: job 0:6530433781 is in state 'finished'
[2025-02-25 11:03:08] 2025-02-25 16:02:39,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:03:08] 2025-02-25 16:02:41,028 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 11:03:08] 2025-02-25 16:02:41,309 | INFO     | PID=21784 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 11:03:08] 2025-02-25 16:02:41,916 | INFO     | monitor loop #342: job 0:6530433781 is in state 'finished'
[2025-02-25 11:03:08] 2025-02-25 16:02:41,916 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:03:08] 2025-02-25 16:02:43,662 | INFO     | job 6530433781 has state=finished
[2025-02-25 11:03:08] 2025-02-25 16:02:43,662 | INFO     | preparing for final server update for job 6530433781 in state='finished'
[2025-02-25 11:03:08] 2025-02-25 16:02:43,662 | INFO     | this job has now completed (state=finished)
[2025-02-25 11:03:08] 2025-02-25 16:02:43,663 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 11:03:08] 2025-02-25 16:02:43,663 | INFO     | log transfer has been attempted: DONE
[2025-02-25 11:03:08] 2025-02-25 16:02:43,663 | INFO     | job 6530433781 has finished - writing final server update
[2025-02-25 11:03:08] 2025-02-25 16:02:43,663 | INFO     | total number of processed events: 400 (read)
[2025-02-25 11:03:08] 2025-02-25 16:02:43,665 | INFO     | executing command: lscpu
[2025-02-25 11:03:08] 2025-02-25 16:02:43,688 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 11:03:08] 2025-02-25 16:02:43,703 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 11:03:08] 2025-02-25 16:02:44,419 | INFO     | monitor loop #343: job 0:6530433781 is in state 'finished'
[2025-02-25 11:03:08] 2025-02-25 16:02:44,419 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:03:08] 2025-02-25 16:02:46,922 | INFO     | monitor loop #344: job 0:6530433781 is in state 'finished'
[2025-02-25 11:03:08] 2025-02-25 16:02:46,922 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,413 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 11:03:08] 2025-02-25 16:02:48,413 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530433781/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,414 | INFO     | extracted standard info from prmon json
[2025-02-25 11:03:08] 2025-02-25 16:02:48,415 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 11:03:08] 2025-02-25 16:02:48,415 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 11:03:08] 2025-02-25 16:02:48,415 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 11:03:08] 2025-02-25 16:02:48,415 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 11:03:08] 2025-02-25 16:02:48,417 | INFO     | fitting pss+swap vs Time
[2025-02-25 11:03:08] 2025-02-25 16:02:48,417 | INFO     | model: linear, x: [1740495040.0, 1740495101.0, 1740495162.0, 1740495223.0, 1740495284.0, 1740495345.0, 1740495406.0, 1740495467.0, 1740495528.0, 1740495589.0, 1740
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | sum of square deviations: 101843770.0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | sum of deviations: 18192695510.000004
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | mean x: 1740497114.0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | mean y: 2589733.2608695654
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | -- intersect: -310908269429.1186
[2025-02-25 11:03:08] 2025-02-25 16:02:48,418 | INFO     | intersect: -310908269429.1186
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | chi2: 2.116017793718669
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | -- intersect: -310908269429.1186
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | current memory leak: 178.63 B/s (using 69 data points, chi2=2.12)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | ..............................
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | . Timing measurements:
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | . get job = 0 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,419 | INFO     | . initial setup = 2 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | . payload setup = 7 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | . stage-in = 0 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | . payload execution = 4623 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | . stage-out = 0 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | . log creation = 0 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,420 | INFO     | ..............................
[2025-02-25 11:03:08] 2025-02-25 16:02:48,929 | INFO     | 
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | job summary report
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | --------------------------------------------------
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | PanDA job id: 6530433781
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | task id: 43401163
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | errors: (none)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | pilot state: finished 
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | transexitcode: 0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,930 | INFO     | exeerrorcode: 0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | exeerrordiag: 
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | exitcode: 0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | exitmsg: OK
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | cpuconsumptiontime: 43878 s
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | nevents: 400
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | neventsw: 0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | pid: 28185
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | pgrp: 28185
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | corecount: 12
[2025-02-25 11:03:08] 2025-02-25 16:02:48,931 | INFO     | event service: False
[2025-02-25 11:03:08] 2025-02-25 16:02:48,932 | INFO     | sizes: {0: 2376768, 1: 2376967, 6: 2377173, 11: 2377201, 4635: 2403170, 4637: 2412111, 4639: 2412295, 4647: 2412465}
[2025-02-25 11:03:08] 2025-02-25 16:02:48,932 | INFO     | --------------------------------------------------
[2025-02-25 11:03:08] 2025-02-25 16:02:48,932 | INFO     | 
[2025-02-25 11:03:08] 2025-02-25 16:02:48,932 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 11:03:08] 2025-02-25 16:02:48,956 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,957 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,957 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,957 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,958 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,960 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,960 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,960 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 11:03:08] 2025-02-25 16:02:48,960 | INFO     | job 6530433781 has completed (purged errors)
[2025-02-25 11:03:08] 2025-02-25 16:02:48,960 | INFO     | overall cleanup function is called
[2025-02-25 11:03:08] 2025-02-25 16:02:49,969 | INFO     | --- collectZombieJob: --- 10, [28185]
[2025-02-25 11:03:08] 2025-02-25 16:02:49,969 | INFO     | zombie collector waiting for pid 28185
[2025-02-25 11:03:08] 2025-02-25 16:02:49,969 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 11:03:08] 2025-02-25 16:02:49,969 | INFO     | collected zombie processes
[2025-02-25 11:03:08] 2025-02-25 16:02:49,969 | INFO     | will attempt to kill all subprocesses of pid=28185
[2025-02-25 11:03:08] 2025-02-25 16:02:50,036 | INFO     | process IDs to be killed: [28185] (in reverse order)
[2025-02-25 11:03:08] 2025-02-25 16:02:50,083 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 11:03:08] 2025-02-25 16:02:50,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 11:03:08] 2025-02-25 16:02:50,087 | INFO     | did not find any defunct processes belonging to 28185
[2025-02-25 11:03:08] 2025-02-25 16:02:50,089 | INFO     | did not find any defunct processes belonging to 28185
[2025-02-25 11:03:08] 2025-02-25 16:02:50,090 | INFO     | ready for new job
[2025-02-25 11:03:08] 2025-02-25 16:02:50,090 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 11:03:08] 2025-02-25 16:02:50,091 | INFO     | **************************************
[2025-02-25 11:03:08] 2025-02-25 16:02:50,091 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 11:03:08] 2025-02-25 16:02:50,091 | INFO     | **************************************
[2025-02-25 11:03:08] 2025-02-25 16:02:50,091 | INFO     | 
[2025-02-25 11:03:08] 2025-02-25 16:02:50,092 | INFO     | architecture information:
[2025-02-25 11:03:08] 2025-02-25 16:02:50,092 | INFO     | executing command: cat /etc/os-release
[2025-02-25 11:03:08] 2025-02-25 16:02:50,106 | INFO     | cat /etc/os-release:
[2025-02-25 11:03:08] NAME="CentOS Linux"
[2025-02-25 11:03:08] VERSION="7 (Core)"
[2025-02-25 11:03:08] ID="centos"
[2025-02-25 11:03:08] ID_LIKE="rhel fedora"
[2025-02-25 11:03:08] VERSION_ID="7"
[2025-02-25 11:03:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 11:03:08] ANSI_COLOR="0;31"
[2025-02-25 11:03:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 11:03:08] HOME_URL="https://www.centos.org/"
[2025-02-25 11:03:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 11:03:08] 
[2025-02-25 11:03:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 11:03:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 11:03:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 11:03:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 11:03:08] 
[2025-02-25 11:03:08] 2025-02-25 16:02:50,107 | INFO     | **************************************
[2025-02-25 11:03:08] 2025-02-25 16:02:50,610 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 11:03:08] 2025-02-25 16:02:50,627 | INFO     | sufficient remaining disk space (29375856640 B)
[2025-02-25 11:03:08] 2025-02-25 16:02:50,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 11:03:08] 2025-02-25 16:02:50,627 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 11:03:08] 2025-02-25 16:02:50,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:03:08] 2025-02-25 16:02:50,628 | INFO     | aborting loop
[2025-02-25 11:03:08] 2025-02-25 16:02:51,224 | INFO     | all data control threads have been joined
[2025-02-25 11:03:08] 2025-02-25 16:02:51,331 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 11:03:08] 2025-02-25 16:02:51,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 11:03:08] 2025-02-25 16:02:51,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 11:03:08] 2025-02-25 16:02:51,615 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 11:03:08] 2025-02-25 16:02:51,633 | INFO     | [job] retrieve thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:51,633 | INFO     | [job] job monitor thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:51,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 11:03:08] 2025-02-25 16:02:51,827 | INFO     | all payload control threads have been joined
[2025-02-25 11:03:08] 2025-02-25 16:02:51,840 | INFO     | all job control threads have been joined
[2025-02-25 11:03:08] 2025-02-25 16:02:51,846 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:51,998 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,193 | INFO     | [payload] failed_post thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,230 | INFO     | [data] control thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,425 | INFO     | [data] copytool_in thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,578 | INFO     | [payload] validate_post thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,798 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,828 | INFO     | [payload] control thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:52,846 | INFO     | [job] control thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:53,099 | INFO     | [job] validate thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:53,512 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:03:08] 2025-02-25 16:02:53,763 | INFO     | [data] copytool_out thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:54,518 | INFO     | [job] queue monitor thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:02:55,621 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:03:01,578 | INFO     | job.realtimelogging is not enabled
[2025-02-25 11:03:08] 2025-02-25 16:03:02,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 11:03:08] 2025-02-25 16:03:03,292 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140311646512960)>', '<ExcThread(monitor, started 140310390757120)>']
[2025-02-25 11:03:08] 2025-02-25 16:03:03,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 11:03:08] 2025-02-25 16:03:03,389 | INFO     | [monitor] control thread has ended
[2025-02-25 11:03:08] 2025-02-25 16:03:08,302 | INFO     | all workflow threads have been joined
[2025-02-25 11:03:08] 2025-02-25 16:03:08,302 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 11:03:08] 2025-02-25 16:03:08,302 | INFO     | traces error code: 0
[2025-02-25 11:03:08] 2025-02-25 16:03:08,303 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 11:03:08] 2025-02-25 16:03:08,383 [wrapper] ==== pilot stdout END ====
[2025-02-25 11:03:08] 2025-02-25 16:03:08,387 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 11:03:08] 2025-02-25 16:03:08,391 [wrapper] pilotpid: 21784
[2025-02-25 11:03:08] 2025-02-25 16:03:08,395 [wrapper] Pilot exit status: 0
[2025-02-25 11:03:08] 2025-02-25 16:03:08,411 [wrapper] pandaids: 6530433781
[2025-02-25 11:03:08] 2025-02-25 16:03:08,456 [wrapper] cleanup supervisor_pilot 13930 21785
[2025-02-25 11:03:08] 2025-02-25 16:03:08,460 [wrapper] Test setup, not cleaning
[2025-02-25 11:03:08] 2025-02-25 16:03:08,468 [wrapper] apfmon messages muted
[2025-02-25 11:03:08] 2025-02-25 16:03:08,472 [wrapper] ==== wrapper stdout END ====
[2025-02-25 11:03:08] 2025-02-25 16:03:08,475 [wrapper] ==== wrapper stderr END ====
[2025-02-25 11:03:08]  *** Error codes and diagnostics ***
[2025-02-25 11:03:08]     "exeErrorCode": 0,
[2025-02-25 11:03:08]     "exeErrorDiag": "",
[2025-02-25 11:03:08]     "pilotErrorCode": 0,
[2025-02-25 11:03:08]     "pilotErrorDiag": "",
[2025-02-25 11:03:08]  *** Listing of results directory ***
[2025-02-25 11:03:08] total 422036
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 09:02 pilot3.tar.gz
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 09:29 queuedata.json
[2025-02-25 11:03:08] -rwx------ 1 boincer umatlas     35865 Feb 25 09:29 runpilot2-wrapper.sh
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas       100 Feb 25 09:44 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 11:03:08] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 09:44 run_atlas
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas       105 Feb 25 09:44 job.xml
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas 248668453 Feb 25 09:44 EVNT.43401161._000014.pool.root.1
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:44 start_atlas.sh
[2025-02-25 11:03:08] drwxrwx--x 2 boincer umatlas      4096 Feb 25 09:44 shared
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 09:44 input.tar.gz
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas         0 Feb 25 09:44 boinc_lockfile
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas      2539 Feb 25 09:44 pandaJob.out
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas       424 Feb 25 09:44 setup.sh.local
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas    988282 Feb 25 09:45 agis_schedconf.cvmfs.json
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas   1577983 Feb 25 09:45 agis_ddmendpoints.agis.ALL.json
[2025-02-25 11:03:08] drwx------ 4 boincer umatlas      4096 Feb 25 09:45 pilot3
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas      5869 Feb 25 11:00 init_data.xml
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas        95 Feb 25 11:02 pilot_heartbeat.json
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas 178101224 Feb 25 11:02 HITS.43401163._000333.pool.root.1
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas      1043 Feb 25 11:02 memory_monitor_summary.json
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas        27 Feb 25 11:02 wrapper_checkpoint.txt
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 11:02 boinc_mmap_file
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas       529 Feb 25 11:02 boinc_task_state.xml
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas    359000 Feb 25 11:02 log.43401163._000333.job.log.tgz.1
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas      7757 Feb 25 11:02 heartbeat.json
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas      4287 Feb 25 11:03 pilotlog.txt
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas    439813 Feb 25 11:03 log.43401163._000333.job.log.1
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas       357 Feb 25 11:03 output.list
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas       620 Feb 25 11:03 runtime_log
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas    819200 Feb 25 11:03 result.tar.gz
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 11:03 runtime_log.err
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas       658 Feb 25 11:03 rOPODmJ7A76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmmlfKDmCFnlSo.diag
[2025-02-25 11:03:08] -rw-r--r-- 1 boincer umatlas     21714 Feb 25 11:03 stderr.txt
[2025-02-25 11:03:08] HITS file was successfully produced:
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas 178101224 Feb 25 11:02 shared/HITS.pool.root.1
[2025-02-25 11:03:08]  *** Contents of shared directory: ***
[2025-02-25 11:03:08] total 418084
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas 248668453 Feb 25 09:44 ATLAS.root_0
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:44 start_atlas.sh
[2025-02-25 11:03:08] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 09:44 input.tar.gz
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas 178101224 Feb 25 11:02 HITS.pool.root.1
[2025-02-25 11:03:08] -rw------- 1 boincer umatlas    819200 Feb 25 11:03 result.tar.gz
11:03:10 (17927): run_atlas exited; CPU time 43820.890740
11:03:10 (17927): called boinc_finish(0)

</stderr_txt>
]]>

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