Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:48:57 (17792): wrapper (7.7.26015): starting
09:48:57 (17792): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 09:48:57] Arguments: --nthreads 12
[2025-02-25 09:48:57] Threads: 12
[2025-02-25 09:48:57] Checking for CVMFS
[2025-02-25 09:48:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 09:48:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 09:48:57] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 09:48:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 09:48:57] 2.11.2.0 10995 118123 137660 143041 2 56 14175702 20275200 1 130560 0 24163973 99.985 7791125 40888 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 09:48:57] CVMFS is ok
[2025-02-25 09:48:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 09:48:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 09:48:57] Further information can be found at the LHC@home message board.
[2025-02-25 09:48:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 09:48:57] Checking for apptainer binary...
[2025-02-25 09:48:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 09:48:57] Running /usr/bin/apptainer --version
[2025-02-25 09:48:58] apptainer version 1.3.2-1.el7
[2025-02-25 09:48:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 09:48:59] c-205-22.aglt2.org
[2025-02-25 09:48:59] apptainer works
[2025-02-25 09:48:59] Set ATHENA_PROC_NUMBER=12
[2025-02-25 09:48:59] Set ATHENA_CORE_NUMBER=12
[2025-02-25 09:48:59] Starting ATLAS job with PandaID=6530424800
[2025-02-25 09:48:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 11:12:37]  *** The last 200 lines of the pilot log: ***
[2025-02-25 11:12:37]  is_tar=False
[2025-02-25 11:12:37]  lfn=log.43401137._001391.job.log.tgz.1
[2025-02-25 11:12:37]  mtime=0
[2025-02-25 11:12:37]  protocol_id=None
[2025-02-25 11:12:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 11:12:37]  replicas=None
[2025-02-25 11:12:37]  scope=mc23_13p6TeV
[2025-02-25 11:12:37]  status=None
[2025-02-25 11:12:37]  status_code=0
[2025-02-25 11:12:37]  storage_token=
[2025-02-25 11:12:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530424800/log.43401137._001391.job.log.tgz.1
[2025-02-25 11:12:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/a9/log.43401137._001391.job.log.tgz.1
[2025-02-25 11:12:37]  workdir=None
[2025-02-25 11:12:37] ]
[2025-02-25 11:12:37] 2025-02-25 16:12:14,068 | INFO     | transferring file log.43401137._001391.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530424800/log.43401137._001391.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 11:12:37] 2025-02-25 16:12:14,068 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530424800/log.43401137._001391.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401137._001391.job
[2025-02-25 11:12:37] 2025-02-25 16:12:14,091 | INFO     | adding to output.list: log.43401137._001391.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/63/a9/log.43401137._001391.job.log.tg
[2025-02-25 11:12:37] 2025-02-25 16:12:14,092 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 11:12:37] 2025-02-25 16:12:14,092 | INFO     | summary of transferred files:
[2025-02-25 11:12:37] 2025-02-25 16:12:14,092 | INFO     |  -- lfn=log.43401137._001391.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 11:12:37] 2025-02-25 16:12:14,092 | INFO     | stage-out finished correctly
[2025-02-25 11:12:37] 2025-02-25 16:12:14,380 | INFO     | monitor loop #366: job 0:6530424800 is in state 'finished'
[2025-02-25 11:12:37] 2025-02-25 16:12:14,380 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:12:37] 2025-02-25 16:12:16,749 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 11:12:37] 2025-02-25 16:12:16,883 | INFO     | monitor loop #367: job 0:6530424800 is in state 'finished'
[2025-02-25 11:12:37] 2025-02-25 16:12:16,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:12:37] 2025-02-25 16:12:16,983 | INFO     | 4987s have passed since pilot start
[2025-02-25 11:12:37] 2025-02-25 16:12:19,223 | INFO     | job 6530424800 has state=finished
[2025-02-25 11:12:37] 2025-02-25 16:12:19,223 | INFO     | preparing for final server update for job 6530424800 in state='finished'
[2025-02-25 11:12:37] 2025-02-25 16:12:19,224 | INFO     | this job has now completed (state=finished)
[2025-02-25 11:12:37] 2025-02-25 16:12:19,224 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 11:12:37] 2025-02-25 16:12:19,224 | INFO     | log transfer has been attempted: DONE
[2025-02-25 11:12:37] 2025-02-25 16:12:19,224 | INFO     | job 6530424800 has finished - writing final server update
[2025-02-25 11:12:37] 2025-02-25 16:12:19,224 | INFO     | total number of processed events: 400 (read)
[2025-02-25 11:12:37] 2025-02-25 16:12:19,226 | INFO     | executing command: lscpu
[2025-02-25 11:12:37] 2025-02-25 16:12:19,251 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 11:12:37] 2025-02-25 16:12:19,266 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 11:12:37] 2025-02-25 16:12:19,392 | INFO     | monitor loop #368: job 0:6530424800 is in state 'finished'
[2025-02-25 11:12:37] 2025-02-25 16:12:19,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:12:37] 2025-02-25 16:12:21,895 | INFO     | monitor loop #369: job 0:6530424800 is in state 'finished'
[2025-02-25 11:12:37] 2025-02-25 16:12:21,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 11:12:37] 2025-02-25 16:12:22,116 | INFO     | PID=21453 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,236 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 11:12:37] 2025-02-25 16:12:24,236 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530424800/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 11:12:37] 2025-02-25 16:12:24,237 | INFO     | extracted standard info from prmon json
[2025-02-25 11:12:37] 2025-02-25 16:12:24,237 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 11:12:37] 2025-02-25 16:12:24,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 11:12:37] 2025-02-25 16:12:24,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 11:12:37] 2025-02-25 16:12:24,238 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 11:12:37] 2025-02-25 16:12:24,241 | INFO     | fitting pss+swap vs Time
[2025-02-25 11:12:37] 2025-02-25 16:12:24,241 | INFO     | model: linear, x: [1740495287.0, 1740495348.0, 1740495409.0, 1740495470.0, 1740495531.0, 1740495592.0, 1740495653.0, 1740495714.0, 1740495775.0, 1740495836.0, 1740
[2025-02-25 11:12:37] 2025-02-25 16:12:24,241 | INFO     | sum of square deviations: 130793150.0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,242 | INFO     | sum of deviations: 24942611958.0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,242 | INFO     | mean x: 1740497544.0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,242 | INFO     | mean y: 2539055.933333333
[2025-02-25 11:12:37] 2025-02-25 16:12:24,242 | INFO     | -- intersect: -331915109948.1929
[2025-02-25 11:12:37] 2025-02-25 16:12:24,242 | INFO     | intersect: -331915109948.1929
[2025-02-25 11:12:37] 2025-02-25 16:12:24,243 | INFO     | chi2: 1.6966136496200221
[2025-02-25 11:12:37] 2025-02-25 16:12:24,243 | INFO     | -- intersect: -331915109948.1929
[2025-02-25 11:12:37] 2025-02-25 16:12:24,243 | INFO     | current memory leak: 190.70 B/s (using 75 data points, chi2=1.70)
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | ..............................
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | . Timing measurements:
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | . get job = 0 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | . initial setup = 2 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | . payload setup = 7 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,244 | INFO     | . stage-in = 0 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,245 | INFO     | . payload execution = 4953 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,245 | INFO     | . stage-out = 0 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,245 | INFO     | . log creation = 0 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,245 | INFO     | ..............................
[2025-02-25 11:12:37] 2025-02-25 16:12:24,327 | INFO     | 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,327 | INFO     | job summary report
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | --------------------------------------------------
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | PanDA job id: 6530424800
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | task id: 43401137
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | errors: (none)
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,328 | INFO     | pilot state: finished 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | transexitcode: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | exeerrorcode: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | exeerrordiag: 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | exitcode: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | exitmsg: OK
[2025-02-25 11:12:37] 2025-02-25 16:12:24,329 | INFO     | cpuconsumptiontime: 46326 s
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | nevents: 400
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | neventsw: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | pid: 27802
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | pgrp: 27802
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | corecount: 12
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | event service: False
[2025-02-25 11:12:37] 2025-02-25 16:12:24,330 | INFO     | sizes: {0: 2376960, 5: 2377166, 11: 2377222, 4964: 2403305, 4965: 2412246, 4968: 2412302, 4975: 2412600}
[2025-02-25 11:12:37] 2025-02-25 16:12:24,331 | INFO     | --------------------------------------------------
[2025-02-25 11:12:37] 2025-02-25 16:12:24,331 | INFO     | 
[2025-02-25 11:12:37] 2025-02-25 16:12:24,331 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 11:12:37] 2025-02-25 16:12:24,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,357 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,357 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,357 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,359 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 11:12:37] 2025-02-25 16:12:24,360 | INFO     | job 6530424800 has completed (purged errors)
[2025-02-25 11:12:37] 2025-02-25 16:12:24,361 | INFO     | overall cleanup function is called
[2025-02-25 11:12:37] 2025-02-25 16:12:25,368 | INFO     | --- collectZombieJob: --- 10, [27802]
[2025-02-25 11:12:37] 2025-02-25 16:12:25,368 | INFO     | zombie collector waiting for pid 27802
[2025-02-25 11:12:37] 2025-02-25 16:12:25,368 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 11:12:37] 2025-02-25 16:12:25,368 | INFO     | collected zombie processes
[2025-02-25 11:12:37] 2025-02-25 16:12:25,368 | INFO     | will attempt to kill all subprocesses of pid=27802
[2025-02-25 11:12:37] 2025-02-25 16:12:25,430 | INFO     | process IDs to be killed: [27802] (in reverse order)
[2025-02-25 11:12:37] 2025-02-25 16:12:25,478 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 11:12:37] 2025-02-25 16:12:25,478 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 11:12:37] 2025-02-25 16:12:25,482 | INFO     | did not find any defunct processes belonging to 27802
[2025-02-25 11:12:37] 2025-02-25 16:12:25,486 | INFO     | did not find any defunct processes belonging to 27802
[2025-02-25 11:12:37] 2025-02-25 16:12:25,486 | INFO     | ready for new job
[2025-02-25 11:12:37] 2025-02-25 16:12:25,486 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 11:12:37] 2025-02-25 16:12:25,487 | INFO     | **************************************
[2025-02-25 11:12:37] 2025-02-25 16:12:25,487 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 11:12:37] 2025-02-25 16:12:25,487 | INFO     | **************************************
[2025-02-25 11:12:37] 2025-02-25 16:12:25,487 | INFO     | 
[2025-02-25 11:12:37] 2025-02-25 16:12:25,488 | INFO     | architecture information:
[2025-02-25 11:12:37] 2025-02-25 16:12:25,488 | INFO     | executing command: cat /etc/os-release
[2025-02-25 11:12:37] 2025-02-25 16:12:25,503 | INFO     | cat /etc/os-release:
[2025-02-25 11:12:37] NAME="CentOS Linux"
[2025-02-25 11:12:37] VERSION="7 (Core)"
[2025-02-25 11:12:37] ID="centos"
[2025-02-25 11:12:37] ID_LIKE="rhel fedora"
[2025-02-25 11:12:37] VERSION_ID="7"
[2025-02-25 11:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 11:12:37] ANSI_COLOR="0;31"
[2025-02-25 11:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 11:12:37] HOME_URL="https://www.centos.org/"
[2025-02-25 11:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 11:12:37] 
[2025-02-25 11:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 11:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 11:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 11:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 11:12:37] 
[2025-02-25 11:12:37] 2025-02-25 16:12:25,503 | INFO     | **************************************
[2025-02-25 11:12:37] 2025-02-25 16:12:26,006 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 11:12:37] 2025-02-25 16:12:26,024 | INFO     | sufficient remaining disk space (29355933696 B)
[2025-02-25 11:12:37] 2025-02-25 16:12:26,024 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 11:12:37] 2025-02-25 16:12:26,025 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 11:12:37] 2025-02-25 16:12:26,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:12:37] 2025-02-25 16:12:26,025 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:12:37] 2025-02-25 16:12:26,025 | INFO     | aborting loop
[2025-02-25 11:12:37] 2025-02-25 16:12:26,127 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 11:12:37] 2025-02-25 16:12:26,127 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 11:12:37] 2025-02-25 16:12:26,128 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 11:12:37] 2025-02-25 16:12:26,238 | INFO     | all data control threads have been joined
[2025-02-25 11:12:37] 2025-02-25 16:12:27,030 | INFO     | [job] retrieve thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,031 | INFO     | [job] queue monitor thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,031 | INFO     | [job] job monitor thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,095 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,140 | INFO     | [payload] validate_post thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,191 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 11:12:37] 2025-02-25 16:12:27,243 | INFO     | [data] control thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,338 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 11:12:37] 2025-02-25 16:12:27,473 | INFO     | all payload control threads have been joined
[2025-02-25 11:12:37] 2025-02-25 16:12:27,675 | INFO     | all job control threads have been joined
[2025-02-25 11:12:37] 2025-02-25 16:12:27,761 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:27,976 | INFO     | [job] validate thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,071 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,214 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,299 | INFO     | [payload] failed_post thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,421 | INFO     | [data] copytool_in thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,478 | INFO     | [payload] control thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:28,676 | INFO     | [job] control thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:29,197 | INFO     | [data] copytool_out thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:31,344 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 11:12:37] 2025-02-25 16:12:32,305 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140261661947712)>', '<ExcThread(monitor, started 140260965062400)>']
[2025-02-25 11:12:37] 2025-02-25 16:12:33,157 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 11:12:37] 2025-02-25 16:12:33,157 | INFO     | [monitor] control thread has ended
[2025-02-25 11:12:37] 2025-02-25 16:12:37,326 | INFO     | all workflow threads have been joined
[2025-02-25 11:12:37] 2025-02-25 16:12:37,326 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 11:12:37] 2025-02-25 16:12:37,333 | INFO     | traces error code: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:37,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 11:12:37] 2025-02-25 16:12:37,423 [wrapper] ==== pilot stdout END ====
[2025-02-25 11:12:37] 2025-02-25 16:12:37,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 11:12:37] 2025-02-25 16:12:37,430 [wrapper] pilotpid: 21453
[2025-02-25 11:12:37] 2025-02-25 16:12:37,434 [wrapper] Pilot exit status: 0
[2025-02-25 11:12:37] 2025-02-25 16:12:37,449 [wrapper] pandaids: 6530424800
[2025-02-25 11:12:37] 2025-02-25 16:12:37,489 [wrapper] cleanup supervisor_pilot  7574 21454
[2025-02-25 11:12:37] 2025-02-25 16:12:37,493 [wrapper] Test setup, not cleaning
[2025-02-25 11:12:37] 2025-02-25 16:12:37,501 [wrapper] apfmon messages muted
[2025-02-25 11:12:37] 2025-02-25 16:12:37,505 [wrapper] ==== wrapper stdout END ====
[2025-02-25 11:12:37] 2025-02-25 16:12:37,509 [wrapper] ==== wrapper stderr END ====
[2025-02-25 11:12:37]  *** Error codes and diagnostics ***
[2025-02-25 11:12:37]     "exeErrorCode": 0,
[2025-02-25 11:12:37]     "exeErrorDiag": "",
[2025-02-25 11:12:37]     "pilotErrorCode": 0,
[2025-02-25 11:12:37]     "pilotErrorDiag": "",
[2025-02-25 11:12:37]  *** Listing of results directory ***
[2025-02-25 11:12:37] total 432912
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 09:02 pilot3.tar.gz
[2025-02-25 11:12:37] -rwx------ 1 boincer umatlas     35865 Feb 25 09:20 runpilot2-wrapper.sh
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 09:20 queuedata.json
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas       100 Feb 25 09:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 11:12:37] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 09:48 run_atlas
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas       105 Feb 25 09:48 job.xml
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas 252934037 Feb 25 09:48 EVNT.43401135._000068.pool.root.1
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:48 start_atlas.sh
[2025-02-25 11:12:37] drwxrwx--x 2 boincer umatlas      4096 Feb 25 09:48 shared
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 09:48 input.tar.gz
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas         0 Feb 25 09:48 boinc_lockfile
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas      2558 Feb 25 09:48 pandaJob.out
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas       424 Feb 25 09:49 setup.sh.local
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas    988282 Feb 25 09:49 agis_schedconf.cvmfs.json
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas   1577983 Feb 25 09:49 agis_ddmendpoints.agis.ALL.json
[2025-02-25 11:12:37] drwx------ 4 boincer umatlas      4096 Feb 25 09:49 pilot3
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas      5869 Feb 25 11:01 init_data.xml
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas 184899955 Feb 25 11:11 HITS.43401137._001391.pool.root.1
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas       529 Feb 25 11:11 boinc_task_state.xml
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas      1045 Feb 25 11:12 memory_monitor_summary.json
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas    365640 Feb 25 11:12 log.43401137._001391.job.log.tgz.1
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas        95 Feb 25 11:12 pilot_heartbeat.json
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas        27 Feb 25 11:12 wrapper_checkpoint.txt
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 11:12 boinc_mmap_file
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas      7762 Feb 25 11:12 heartbeat.json
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas      4215 Feb 25 11:12 pilotlog.txt
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas    467286 Feb 25 11:12 log.43401137._001391.job.log.1
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas       357 Feb 25 11:12 output.list
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas       620 Feb 25 11:12 runtime_log
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas    849920 Feb 25 11:12 result.tar.gz
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas       658 Feb 25 11:12 T6hNDmNyA76n9Rq4apOajLDm4fhM0noT9bVoFjIUDmgjfKDmQMMPPm.diag
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 11:12 runtime_log.err
[2025-02-25 11:12:37] -rw-r--r-- 1 boincer umatlas     21699 Feb 25 11:12 stderr.txt
[2025-02-25 11:12:37] HITS file was successfully produced:
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas 184899955 Feb 25 11:11 shared/HITS.pool.root.1
[2025-02-25 11:12:37]  *** Contents of shared directory: ***
[2025-02-25 11:12:37] total 428924
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas 252934037 Feb 25 09:48 ATLAS.root_0
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:48 start_atlas.sh
[2025-02-25 11:12:37] -rw-r--r-- 2 boincer umatlas    503553 Feb 25 09:48 input.tar.gz
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas 184899955 Feb 25 11:11 HITS.pool.root.1
[2025-02-25 11:12:37] -rw------- 1 boincer umatlas    849920 Feb 25 11:12 result.tar.gz
11:12:39 (17792): run_atlas exited; CPU time 46253.513292
11:12:39 (17792): called boinc_finish(0)

</stderr_txt>
]]>

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