Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:34:48 (3753370): wrapper (7.7.26015): starting
09:34:48 (3753370): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 09:34:48] Arguments: --nthreads 12
[2025-02-25 09:34:48] Threads: 12
[2025-02-25 09:34:48] Checking for CVMFS
[2025-02-25 09:34:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 09:34:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 09:34:48] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 09:34:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 09:34:48] 2.11.5.0 2706 48888 331576 143046 0 120 23788716 45568000 14030 130560 0 206476175 99.630 243551967 24323 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-02-25 09:34:48] CVMFS is ok
[2025-02-25 09:34:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 09:34:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 09:34:48] Further information can be found at the LHC@home message board.
[2025-02-25 09:34:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 09:34:48] Checking for apptainer binary...
[2025-02-25 09:34:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 09:34:48] Running /usr/bin/apptainer --version
[2025-02-25 09:34:48] apptainer version 1.3.5-1.el9
[2025-02-25 09:34:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 09:34:49] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0037.triumf.lcg
[2025-02-25 09:34:49] apptainer works
[2025-02-25 09:34:49] Set ATHENA_PROC_NUMBER=12
[2025-02-25 09:34:49] Set ATHENA_CORE_NUMBER=12
[2025-02-25 09:34:49] Starting ATLAS job with PandaID=6530360099
[2025-02-25 09:34:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 12:05:29]  *** The last 200 lines of the pilot log: ***
[2025-02-25 12:05:29] 2025-02-25 20:05:08,385 | INFO     | model: linear, x: [1740504931.0, 1740504992.0, 1740505053.0, 1740505114.0, 1740505175.0, 1740505236.0, 1740505297.0, 1740505358.0, 1740505419.0, 1740505480.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,385 | INFO     | sum of square deviations: 887807064.9647901
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | sum of deviations: 50476664582.10562
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | mean x: 1740509231.8802817
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | mean y: 2694376.3591549294
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | -- intersect: -98954730233.86688
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | intersect: -98954730233.86688
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | chi2: 4.890300257554405
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | current chi2=4.890300257554405 (change=-0.13858220839974725 %)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | right removable region: 141
[2025-02-25 12:05:29] 2025-02-25 20:05:08,386 | INFO     | model: linear, x: [1740505236.0, 1740505297.0, 1740505358.0, 1740505419.0, 1740505480.0, 1740505541.0, 1740505602.0, 1740505663.0, 1740505724.0, 1740505785.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | sum of square deviations: 887774124.9647901
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | sum of deviations: 12654946974.32394
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | mean x: 1740509536.8802817
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | mean y: 2757306.9014084507
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | -- intersect: -24807670568.994
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | intersect: -24807670568.994
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | chi2: 2.244291387173426
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | current chi2=2.244291387173426 (change=54.04368939782439 %)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,387 | INFO     | model: linear, x: [1740505541.0, 1740505602.0, 1740505663.0, 1740505724.0, 1740505785.0, 1740505846.0, 1740505907.0, 1740505968.0, 1740506029.0, 1740506090.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | sum of square deviations: 797235026.7153263
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | sum of deviations: -16043996142.343071
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | mean x: 1740509689.3941605
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | mean y: 2805663.321167883
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | -- intersect: 35029779901.27309
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | intersect: 35029779901.27309
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | chi2: 0.8650876080221309
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | current chi2=0.8650876080221309 (change=61.453864103107136 %)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,388 | INFO     | model: linear, x: [1740505846.0, 1740505907.0, 1740505968.0, 1740506029.0, 1740506090.0, 1740506152.0, 1740506212.0, 1740506273.0, 1740506334.0, 1740506396.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | sum of square deviations: 713068140.9090884
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | sum of deviations: -30323544876.72728
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | mean x: 1740509841.909091
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | mean y: 2831076.4393939395
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | -- intersect: 74018798515.72054
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | intersect: 74018798515.72054
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | chi2: 0.23013939932623437
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | current chi2=0.23013939932623437 (change=73.39698347403136 %)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,389 | INFO     | model: linear, x: [1740506152.0, 1740506212.0, 1740506273.0, 1740506334.0, 1740506396.0, 1740506457.0, 1740506518.0, 1740506578.0, 1740506639.0, 1740506701.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | sum of square deviations: 635040905.0393696
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | sum of deviations: -24435299050.472435
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | mean x: 1740509994.425197
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | mean y: 2819534.897637795
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | -- intersect: 66974697844.81397
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | intersect: 66974697844.81397
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | chi2: 0.21915131356978743
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | current chi2=0.21915131356978743 (change=4.774534820467993 %)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | left removable region: 40
[2025-02-25 12:05:29] 2025-02-25 20:05:08,390 | INFO     | model: linear, x: [1740507373.0, 1740507433.0, 1740507494.0, 1740507554.0, 1740507615.0, 1740507676.0, 1740507738.0, 1740507798.0, 1740507859.0, 1740507920.0, 1740
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | sum of square deviations: 319406036.35643506
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | sum of deviations: 1964178070.8910887
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | mean x: 1740510421.4059405
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | mean y: 2755999.5148514854
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | -- intersect: -10700461888.540195
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | intersect: -10700461888.540195
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | chi2: 0.0007192803833829531
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | -- intersect: -10700461888.540195
[2025-02-25 12:05:29] 2025-02-25 20:05:08,391 | INFO     | current memory leak: 6.15 B/s (using 101 data points, chi2=0.00)
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | ..............................
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . Timing measurements:
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . get job = 0 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . initial setup = 2 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . payload setup = 8 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . stage-in = 0 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . payload execution = 8950 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . stage-out = 1 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | . log creation = 0 s
[2025-02-25 12:05:29] 2025-02-25 20:05:08,392 | INFO     | ..............................
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | 
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | job summary report
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | --------------------------------------------------
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | PanDA job id: 6530360099
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | task id: 43401171
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | errors: (none)
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | pilot state: finished 
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | transexitcode: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:09,047 | INFO     | exeerrorcode: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | exeerrordiag: 
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | exitcode: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | exitmsg: OK
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | cpuconsumptiontime: 27148 s
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | nevents: 400
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | neventsw: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | pid: 3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | pgrp: 3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | corecount: 12
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | event service: False
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | sizes: {0: 2376113, 1: 2376966, 5: 2377172, 11: 2377228, 8962: 2405427, 8963: 2405426, 8965: 2414545, 8967: 2414601, 8992: 2414771}
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | --------------------------------------------------
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | 
[2025-02-25 12:05:29] 2025-02-25 20:05:09,048 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-02-25 12:05:29] 2025-02-25 20:05:09,170 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | job 6530360099 has completed (purged errors)
[2025-02-25 12:05:29] 2025-02-25 20:05:09,171 | INFO     | overall cleanup function is called
[2025-02-25 12:05:29] 2025-02-25 20:05:09,925 | INFO     | PID=3756991 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-02-25 12:05:29] 2025-02-25 20:05:09,925 | INFO     | .. there are 28 such processes running
[2025-02-25 12:05:29] 2025-02-25 20:05:10,180 | INFO     | --- collectZombieJob: --- 10, [3763430]
[2025-02-25 12:05:29] 2025-02-25 20:05:10,180 | INFO     | zombie collector waiting for pid 3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:10,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 12:05:29] 2025-02-25 20:05:10,180 | INFO     | collected zombie processes
[2025-02-25 12:05:29] 2025-02-25 20:05:10,180 | INFO     | will attempt to kill all subprocesses of pid=3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:10,740 | INFO     | process IDs to be killed: [3763430] (in reverse order)
[2025-02-25 12:05:29] 2025-02-25 20:05:11,045 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 12:05:29] 2025-02-25 20:05:11,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 12:05:29] 2025-02-25 20:05:11,063 | INFO     | did not find any defunct processes belonging to 3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:11,079 | INFO     | did not find any defunct processes belonging to 3763430
[2025-02-25 12:05:29] 2025-02-25 20:05:11,079 | INFO     | ready for new job
[2025-02-25 12:05:29] 2025-02-25 20:05:11,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 12:05:29] 2025-02-25 20:05:11,081 | INFO     | **************************************
[2025-02-25 12:05:29] 2025-02-25 20:05:11,081 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 12:05:29] 2025-02-25 20:05:11,081 | INFO     | **************************************
[2025-02-25 12:05:29] 2025-02-25 20:05:11,081 | INFO     | 
[2025-02-25 12:05:29] 2025-02-25 20:05:11,083 | INFO     | architecture information:
[2025-02-25 12:05:29] 2025-02-25 20:05:11,087 | INFO     | executing command: cat /etc/os-release
[2025-02-25 12:05:29] 2025-02-25 20:05:11,155 | INFO     | cat /etc/os-release:
[2025-02-25 12:05:29] NAME="CentOS Linux"
[2025-02-25 12:05:29] VERSION="7 (Core)"
[2025-02-25 12:05:29] ID="centos"
[2025-02-25 12:05:29] ID_LIKE="rhel fedora"
[2025-02-25 12:05:29] VERSION_ID="7"
[2025-02-25 12:05:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 12:05:29] ANSI_COLOR="0;31"
[2025-02-25 12:05:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 12:05:29] HOME_URL="https://www.centos.org/"
[2025-02-25 12:05:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 12:05:29] 
[2025-02-25 12:05:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 12:05:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 12:05:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 12:05:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 12:05:29] 
[2025-02-25 12:05:29] 2025-02-25 20:05:11,155 | INFO     | **************************************
[2025-02-25 12:05:29] 2025-02-25 20:05:11,659 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-02-25 12:05:29] 2025-02-25 20:05:11,714 | INFO     | sufficient remaining disk space (1840358883328 B)
[2025-02-25 12:05:29] 2025-02-25 20:05:11,715 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 12:05:29] 2025-02-25 20:05:11,715 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 12:05:29] 2025-02-25 20:05:11,938 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 12:05:29] 2025-02-25 20:05:11,938 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 12:05:29] 2025-02-25 20:05:11,938 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 12:05:29] 2025-02-25 20:05:11,958 | INFO     | all payload control threads have been joined
[2025-02-25 12:05:29] 2025-02-25 20:05:12,059 | INFO     | all data control threads have been joined
[2025-02-25 12:05:29] 2025-02-25 20:05:12,692 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:05:29] 2025-02-25 20:05:12,692 | INFO     | aborting loop
[2025-02-25 12:05:29] 2025-02-25 20:05:12,721 | INFO     | [job] retrieve thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:12,739 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 12:05:29] 2025-02-25 20:05:12,964 | INFO     | [payload] control thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,048 | INFO     | [payload] failed_post thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,048 | INFO     | [payload] validate_post thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,065 | INFO     | [data] control thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,129 | INFO     | all job control threads have been joined
[2025-02-25 12:05:29] 2025-02-25 20:05:13,166 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 12:05:29] 2025-02-25 20:05:13,252 | INFO     | [job] validate thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,624 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,698 | INFO     | [job] job monitor thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,732 | INFO     | [data] copytool_in thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:13,756 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 12:05:29] 2025-02-25 20:05:13,852 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:14,107 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:14,135 | INFO     | [job] control thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:14,746 | INFO     | [data] copytool_out thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:14,762 | INFO     | [job] queue monitor thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:17,176 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:22,053 | INFO     | job.realtimelogging is not enabled
[2025-02-25 12:05:29] 2025-02-25 20:05:23,059 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 12:05:29] 2025-02-25 20:05:23,371 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140717681628992)>', '<ExcThread(monitor, started 140717011756800)>']
[2025-02-25 12:05:29] 2025-02-25 20:05:24,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 12:05:29] 2025-02-25 20:05:24,009 | INFO     | [monitor] control thread has ended
[2025-02-25 12:05:29] 2025-02-25 20:05:28,401 | INFO     | all workflow threads have been joined
[2025-02-25 12:05:29] 2025-02-25 20:05:28,401 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 12:05:29] 2025-02-25 20:05:28,401 | INFO     | traces error code: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:28,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 12:05:29] 2025-02-25 20:05:28,792 [wrapper] ==== pilot stdout END ====
[2025-02-25 12:05:29] 2025-02-25 20:05:28,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 12:05:29] 2025-02-25 20:05:28,822 [wrapper] pilotpid: 3756991
[2025-02-25 12:05:29] 2025-02-25 20:05:28,845 [wrapper] Pilot exit status: 0
[2025-02-25 12:05:29] 2025-02-25 20:05:29,023 [wrapper] pandaids: 6530360099
[2025-02-25 12:05:29] 2025-02-25 20:05:29,261 [wrapper] cleanup supervisor_pilot  270447 3756992
[2025-02-25 12:05:29] 2025-02-25 20:05:29,281 [wrapper] Test setup, not cleaning
[2025-02-25 12:05:29] 2025-02-25 20:05:29,318 [wrapper] apfmon messages muted
[2025-02-25 12:05:29] 2025-02-25 20:05:29,320 [wrapper] ==== wrapper stdout END ====
[2025-02-25 12:05:29] 2025-02-25 20:05:29,322 [wrapper] ==== wrapper stderr END ====
[2025-02-25 12:05:29]  *** Error codes and diagnostics ***
[2025-02-25 12:05:29]     "exeErrorCode": 0,
[2025-02-25 12:05:29]     "exeErrorDiag": "",
[2025-02-25 12:05:29]     "pilotErrorCode": 0,
[2025-02-25 12:05:29]     "pilotErrorDiag": "",
[2025-02-25 12:05:29]  *** Listing of results directory ***
[2025-02-25 12:05:29] total 440184
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc    491065 Feb 25 05:37 pilot3.tar.gz
[2025-02-25 12:05:29] -rwx------. 1 boinc boinc     35865 Feb 25 05:37 runpilot2-wrapper.sh
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc      5118 Feb 25 05:38 queuedata.json
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc       100 Feb 25 09:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 12:05:29] -rwxr-xr-x. 1 boinc boinc      7986 Feb 25 09:34 run_atlas
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc       105 Feb 25 09:34 job.xml
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc      6604 Feb 25 09:34 init_data.xml
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc 255187233 Feb 25 09:34 EVNT.43401169._000012.pool.root.1
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc     17569 Feb 25 09:34 start_atlas.sh
[2025-02-25 12:05:29] drwxrwx--x. 2 boinc boinc      4096 Feb 25 09:34 shared
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc    503547 Feb 25 09:34 input.tar.gz
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc         0 Feb 25 09:34 boinc_lockfile
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc      2541 Feb 25 09:34 pandaJob.out
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc       424 Feb 25 09:34 setup.sh.local
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc    988274 Feb 25 09:34 agis_schedconf.cvmfs.json
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc   1577983 Feb 25 09:35 agis_ddmendpoints.agis.ALL.json
[2025-02-25 12:05:29] drwx------. 4 boinc boinc      4096 Feb 25 09:35 pilot3
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc 189191757 Feb 25 12:03 HITS.43401171._000302.pool.root.1
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc       529 Feb 25 12:03 boinc_task_state.xml
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc      1048 Feb 25 12:04 memory_monitor_summary.json
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc    422118 Feb 25 12:04 log.43401171._000302.job.log.tgz.1
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc        95 Feb 25 12:04 pilot_heartbeat.json
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc      7745 Feb 25 12:05 heartbeat.json
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc        27 Feb 25 12:05 wrapper_checkpoint.txt
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc      8192 Feb 25 12:05 boinc_mmap_file
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc      4286 Feb 25 12:05 pilotlog.txt
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc    856729 Feb 25 12:05 log.43401171._000302.job.log.1
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc       357 Feb 25 12:05 output.list
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc       620 Feb 25 12:05 runtime_log
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc   1300480 Feb 25 12:05 result.tar.gz
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc     11144 Feb 25 12:05 runtime_log.err
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc       662 Feb 25 12:05 MNrLDmMJA76nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmDWwKDmYMyKHo.diag
[2025-02-25 12:05:29] -rw-r--r--. 1 boinc boinc     21911 Feb 25 12:05 stderr.txt
[2025-02-25 12:05:29] HITS file was successfully produced:
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc 189191757 Feb 25 12:03 shared/HITS.pool.root.1
[2025-02-25 12:05:29]  *** Contents of shared directory: ***
[2025-02-25 12:05:29] total 435760
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc 255187233 Feb 25 09:34 ATLAS.root_0
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc     17569 Feb 25 09:34 start_atlas.sh
[2025-02-25 12:05:29] -rw-r--r--. 2 boinc boinc    503547 Feb 25 09:34 input.tar.gz
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc 189191757 Feb 25 12:03 HITS.pool.root.1
[2025-02-25 12:05:29] -rw-------. 1 boinc boinc   1300480 Feb 25 12:05 result.tar.gz
12:05:31 (3753370): run_atlas exited; CPU time 27123.329161
12:05:31 (3753370): called boinc_finish(0)

</stderr_txt>
]]>

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