Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:51:18 (2995432): wrapper (7.7.26015): starting
09:51:18 (2995432): wrapper: running run_atlas (--nthreads 8)
[2025-02-25 09:51:18] Arguments: --nthreads 8
[2025-02-25 09:51:18] Threads: 8
[2025-02-25 09:51:18] Checking for CVMFS
[2025-02-25 09:51:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 09:51:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 09:51:18] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 09:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 09:51:18] 2.11.5.0 370046 16185 239768 143041 1 70 8383824 37653504 28204 130560 0 226821 94.225 3326170 29445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-25 09:51:18] CVMFS is ok
[2025-02-25 09:51:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 09:51:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 09:51:18] Further information can be found at the LHC@home message board.
[2025-02-25 09:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 09:51:18] Checking for apptainer binary...
[2025-02-25 09:51:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 09:51:18] Running /usr/bin/apptainer --version
[2025-02-25 09:51:18] apptainer version 1.3.6-1.el9
[2025-02-25 09:51:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 09:51:18] c6-6-8-1.aglt2.org
[2025-02-25 09:51:18] apptainer works
[2025-02-25 09:51:19] Set ATHENA_PROC_NUMBER=8
[2025-02-25 09:51:19] Set ATHENA_CORE_NUMBER=8
[2025-02-25 09:51:19] Starting ATLAS job with PandaID=6530163238
[2025-02-25 09:51:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 11:31:15]  *** The last 200 lines of the pilot log: ***
[2025-02-25 11:31:15]  guid=a0129b26-3ce8-487f-b71a-6fbbf3982b4e
[2025-02-25 11:31:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-02-25 11:31:15]  is_altstaged=None
[2025-02-25 11:31:15]  is_tar=False
[2025-02-25 11:31:15]  lfn=log.43401121._001143.job.log.tgz.1
[2025-02-25 11:31:15]  mtime=0
[2025-02-25 11:31:15]  protocol_id=None
[2025-02-25 11:31:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 11:31:15]  replicas=None
[2025-02-25 11:31:15]  scope=mc23_13p6TeV
[2025-02-25 11:31:15]  status=None
[2025-02-25 11:31:15]  status_code=0
[2025-02-25 11:31:15]  storage_token=
[2025-02-25 11:31:15]  surl=/tmp/boinchome/slots/3/PanDA_Pilot-6530163238/log.43401121._001143.job.log.tgz.1
[2025-02-25 11:31:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/5b/log.43401121._001143.job.log.tgz.1
[2025-02-25 11:31:15]  workdir=None
[2025-02-25 11:31:15] ]
[2025-02-25 11:31:15] 2025-02-25 16:30:48,868 | INFO     | transferring file log.43401121._001143.job.log.tgz.1 from /tmp/boinchome/slots/3/PanDA_Pilot-6530163238/log.43401121._001143.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 11:31:15] 2025-02-25 16:30:48,868 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/3/PanDA_Pilot-6530163238/log.43401121._001143.job.log.tgz.1 /tmp/boinchome/slots/3/log.43401121._001143.job
[2025-02-25 11:31:15] 2025-02-25 16:30:48,887 | INFO     | adding to output.list: log.43401121._001143.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f8/5b/log.43401121._001143.job.log.tg
[2025-02-25 11:31:15] 2025-02-25 16:30:48,888 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 11:31:15] 2025-02-25 16:30:48,888 | INFO     | summary of transferred files:
[2025-02-25 11:31:15] 2025-02-25 16:30:48,888 | INFO     |  -- lfn=log.43401121._001143.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 11:31:15] 2025-02-25 16:30:48,888 | INFO     | stage-out finished correctly
[2025-02-25 11:31:15] 2025-02-25 16:30:48,986 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 11:31:15] 2025-02-25 16:30:51,842 | INFO     | job 6530163238 has state=finished
[2025-02-25 11:31:15] 2025-02-25 16:30:51,842 | INFO     | preparing for final server update for job 6530163238 in state='finished'
[2025-02-25 11:31:15] 2025-02-25 16:30:51,843 | INFO     | this job has now completed (state=finished)
[2025-02-25 11:31:15] 2025-02-25 16:30:51,843 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 11:31:15] 2025-02-25 16:30:51,843 | INFO     | log transfer has been attempted: DONE
[2025-02-25 11:31:15] 2025-02-25 16:30:51,843 | INFO     | job 6530163238 has finished - writing final server update
[2025-02-25 11:31:15] 2025-02-25 16:30:51,843 | INFO     | total number of processed events: 400 (read)
[2025-02-25 11:31:15] 2025-02-25 16:30:51,861 | INFO     | executing command: lscpu
[2025-02-25 11:31:15] 2025-02-25 16:30:51,924 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2025-02-25 11:31:15] 2025-02-25 16:30:51,962 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 11:31:15] 2025-02-25 16:30:55,243 | INFO     | CPU arch script returned: x86-64-v4
[2025-02-25 11:31:15] 2025-02-25 16:30:55,244 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6530163238/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,251 | INFO     | extracted standard info from prmon json
[2025-02-25 11:31:15] 2025-02-25 16:30:55,251 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 11:31:15] 2025-02-25 16:30:55,251 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 11:31:15] 2025-02-25 16:30:55,252 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 11:31:15] 2025-02-25 16:30:55,252 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 11:31:15] 2025-02-25 16:30:55,255 | INFO     | fitting pss+swap vs Time
[2025-02-25 11:31:15] 2025-02-25 16:30:55,255 | INFO     | model: linear, x: [1740495421.0, 1740495482.0, 1740495543.0, 1740495604.0, 1740495665.0, 1740495726.0, 1740495787.0, 1740495848.0, 1740495909.0, 1740495970.0, 1740
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | sum of square deviations: 233641590.0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | sum of deviations: 20565623936.0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | mean x: 1740498166.0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | mean y: 2166943.131868132
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | -- intersect: -153200140673.6486
[2025-02-25 11:31:15] 2025-02-25 16:30:55,256 | INFO     | intersect: -153200140673.6486
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | chi2: 1.1933277858481472
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | -- intersect: -153200140673.6486
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | current memory leak: 88.02 B/s (using 91 data points, chi2=1.19)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | ..............................
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | . Timing measurements:
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | . get job = 0 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,257 | INFO     | . initial setup = 2 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | . payload setup = 5 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | . stage-in = 0 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | . payload execution = 5933 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | . stage-out = 0 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | . log creation = 0 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,258 | INFO     | ..............................
[2025-02-25 11:31:15] 2025-02-25 16:30:55,408 | WARNING  | process 3008914 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 11:31:15] 2025-02-25 16:30:55,409 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6530163238/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,527 | INFO     | number of running child processes to parent process 3008914: 1
[2025-02-25 11:31:15] 2025-02-25 16:30:55,527 | INFO     | maximum number of monitored processes: 6
[2025-02-25 11:31:15] 2025-02-25 16:30:55,528 | INFO     | aborting job monitoring since job object (job id=6530163238) has expired
[2025-02-25 11:31:15] 2025-02-25 16:30:55,612 | INFO     | 
[2025-02-25 11:31:15] 2025-02-25 16:30:55,612 | INFO     | job summary report
[2025-02-25 11:31:15] 2025-02-25 16:30:55,612 | INFO     | --------------------------------------------------
[2025-02-25 11:31:15] 2025-02-25 16:30:55,612 | INFO     | PanDA job id: 6530163238
[2025-02-25 11:31:15] 2025-02-25 16:30:55,612 | INFO     | task id: 43401121
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | errors: (none)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | pilot state: finished 
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | transexitcode: 0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | exeerrorcode: 0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | exeerrordiag: 
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | exitcode: 0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | exitmsg: OK
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | cpuconsumptiontime: 40019 s
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | nevents: 400
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | neventsw: 0
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | pid: 3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | pgrp: 3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | corecount: 8
[2025-02-25 11:31:15] 2025-02-25 16:30:55,613 | INFO     | event service: False
[2025-02-25 11:31:15] 2025-02-25 16:30:55,614 | INFO     | sizes: {0: 2376770, 1: 2376969, 5: 2377175, 12: 2377231, 5942: 2403890, 5943: 2413015, 5949: 2413129}
[2025-02-25 11:31:15] 2025-02-25 16:30:55,614 | INFO     | --------------------------------------------------
[2025-02-25 11:31:15] 2025-02-25 16:30:55,614 | INFO     | 
[2025-02-25 11:31:15] 2025-02-25 16:30:55,614 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,632 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 11:31:15] 2025-02-25 16:30:55,633 | INFO     | job 6530163238 has completed (purged errors)
[2025-02-25 11:31:15] 2025-02-25 16:30:55,634 | INFO     | overall cleanup function is called
[2025-02-25 11:31:15] 2025-02-25 16:30:56,639 | INFO     | --- collectZombieJob: --- 10, [3008914]
[2025-02-25 11:31:15] 2025-02-25 16:30:56,639 | INFO     | zombie collector waiting for pid 3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:56,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 11:31:15] 2025-02-25 16:30:56,640 | INFO     | collected zombie processes
[2025-02-25 11:31:15] 2025-02-25 16:30:56,640 | INFO     | will attempt to kill all subprocesses of pid=3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:56,802 | INFO     | process IDs to be killed: [3008914] (in reverse order)
[2025-02-25 11:31:15] 2025-02-25 16:30:56,906 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 11:31:15] 2025-02-25 16:30:56,907 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 11:31:15] 2025-02-25 16:30:56,920 | INFO     | did not find any defunct processes belonging to 3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:56,934 | INFO     | did not find any defunct processes belonging to 3008914
[2025-02-25 11:31:15] 2025-02-25 16:30:56,935 | INFO     | ready for new job
[2025-02-25 11:31:15] 2025-02-25 16:30:56,935 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 11:31:15] 2025-02-25 16:30:56,937 | INFO     | **************************************
[2025-02-25 11:31:15] 2025-02-25 16:30:56,937 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 11:31:15] 2025-02-25 16:30:56,937 | INFO     | **************************************
[2025-02-25 11:31:15] 2025-02-25 16:30:56,937 | INFO     | 
[2025-02-25 11:31:15] 2025-02-25 16:30:56,955 | INFO     | architecture information:
[2025-02-25 11:31:15] 2025-02-25 16:30:56,955 | INFO     | executing command: cat /etc/os-release
[2025-02-25 11:31:15] 2025-02-25 16:30:56,969 | INFO     | cat /etc/os-release:
[2025-02-25 11:31:15] NAME="CentOS Linux"
[2025-02-25 11:31:15] VERSION="7 (Core)"
[2025-02-25 11:31:15] ID="centos"
[2025-02-25 11:31:15] ID_LIKE="rhel fedora"
[2025-02-25 11:31:15] VERSION_ID="7"
[2025-02-25 11:31:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 11:31:15] ANSI_COLOR="0;31"
[2025-02-25 11:31:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 11:31:15] HOME_URL="https://www.centos.org/"
[2025-02-25 11:31:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 11:31:15] 
[2025-02-25 11:31:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 11:31:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 11:31:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 11:31:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 11:31:15] 
[2025-02-25 11:31:15] 2025-02-25 16:30:56,969 | INFO     | **************************************
[2025-02-25 11:31:15] 2025-02-25 16:30:57,471 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-02-25 11:31:15] 2025-02-25 16:30:57,488 | INFO     | sufficient remaining disk space (68660756480 B)
[2025-02-25 11:31:15] 2025-02-25 16:30:57,489 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 11:31:15] 2025-02-25 16:30:57,489 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 11:31:15] 2025-02-25 16:30:57,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:31:15] 2025-02-25 16:30:57,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 11:31:15] 2025-02-25 16:30:57,490 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 11:31:15] 2025-02-25 16:30:57,490 | INFO     | aborting loop
[2025-02-25 11:31:15] 2025-02-25 16:30:57,491 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 11:31:15] 2025-02-25 16:30:57,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 11:31:15] 2025-02-25 16:30:57,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 11:31:15] 2025-02-25 16:30:57,751 | INFO     | all job control threads have been joined
[2025-02-25 11:31:15] 2025-02-25 16:30:57,831 | INFO     | all payload control threads have been joined
[2025-02-25 11:31:15] 2025-02-25 16:30:58,051 | INFO     | all data control threads have been joined
[2025-02-25 11:31:15] 2025-02-25 16:30:58,492 | INFO     | [job] job monitor thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,493 | INFO     | [job] retrieve thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,506 | INFO     | [payload] validate_post thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,616 | INFO     | [data] copytool_in thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,622 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,757 | INFO     | [job] control thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:58,836 | INFO     | [payload] control thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,056 | INFO     | [data] control thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,117 | INFO     | [payload] failed_post thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,259 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,496 | INFO     | [data] copytool_out thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,588 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 11:31:15] 2025-02-25 16:30:59,926 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:30:59,942 | INFO     | [job] validate thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:31:00,356 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 11:31:15] 2025-02-25 16:31:01,362 | INFO     | [job] queue monitor thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:31:03,593 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:31:08,311 | INFO     | job.realtimelogging is not enabled
[2025-02-25 11:31:15] 2025-02-25 16:31:09,315 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 11:31:15] 2025-02-25 16:31:10,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140076899632960)>', '<ExcThread(monitor, started 140076054996736)>']
[2025-02-25 11:31:15] 2025-02-25 16:31:10,549 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 11:31:15] 2025-02-25 16:31:10,549 | INFO     | [monitor] control thread has ended
[2025-02-25 11:31:15] 2025-02-25 16:31:15,255 | INFO     | all workflow threads have been joined
[2025-02-25 11:31:15] 2025-02-25 16:31:15,256 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 11:31:15] 2025-02-25 16:31:15,256 | INFO     | traces error code: 0
[2025-02-25 11:31:15] 2025-02-25 16:31:15,256 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 11:31:15] 2025-02-25 16:31:15,436 [wrapper] ==== pilot stdout END ====
[2025-02-25 11:31:15] 2025-02-25 16:31:15,437 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 11:31:15] 2025-02-25 16:31:15,439 [wrapper] pilotpid: 3000542
[2025-02-25 11:31:15] 2025-02-25 16:31:15,440 [wrapper] Pilot exit status: 0
[2025-02-25 11:31:15] 2025-02-25 16:31:15,447 [wrapper] pandaids: 6530163238
[2025-02-25 11:31:15] 2025-02-25 16:31:15,520 [wrapper] cleanup supervisor_pilot 3390340 3000543
[2025-02-25 11:31:15] 2025-02-25 16:31:15,523 [wrapper] Test setup, not cleaning
[2025-02-25 11:31:15] 2025-02-25 16:31:15,526 [wrapper] apfmon messages muted
[2025-02-25 11:31:15] 2025-02-25 16:31:15,527 [wrapper] ==== wrapper stdout END ====
[2025-02-25 11:31:15] 2025-02-25 16:31:15,528 [wrapper] ==== wrapper stderr END ====
[2025-02-25 11:31:15]  *** Error codes and diagnostics ***
[2025-02-25 11:31:15]     "exeErrorCode": 0,
[2025-02-25 11:31:15]     "exeErrorDiag": "",
[2025-02-25 11:31:15]     "pilotErrorCode": 0,
[2025-02-25 11:31:15]     "pilotErrorDiag": "",
[2025-02-25 11:31:15]  *** Listing of results directory ***
[2025-02-25 11:31:15] total 436780
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 06:17 pilot3.tar.gz
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 06:42 queuedata.json
[2025-02-25 11:31:15] -rwx------ 1 boincer umatlas     35865 Feb 25 06:43 runpilot2-wrapper.sh
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas       100 Feb 25 09:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 11:31:15] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 09:51 run_atlas
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas       105 Feb 25 09:51 job.xml
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas 253080876 Feb 25 09:51 EVNT.43401119._000050.pool.root.1
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:51 start_atlas.sh
[2025-02-25 11:31:15] drwxrwx--x 2 boincer umatlas      4096 Feb 25 09:51 shared
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas    503554 Feb 25 09:51 input.tar.gz
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas         0 Feb 25 09:51 boinc_lockfile
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas      2539 Feb 25 09:51 pandaJob.out
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas       467 Feb 25 09:51 setup.sh.local
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas    988282 Feb 25 09:51 agis_schedconf.cvmfs.json
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas   1577983 Feb 25 09:51 agis_ddmendpoints.agis.ALL.json
[2025-02-25 11:31:15] drwx------ 4 boincer umatlas      4096 Feb 25 09:51 pilot3
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas      6855 Feb 25 11:27 init_data.xml
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas 188553029 Feb 25 11:30 HITS.43401121._001143.pool.root.1
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas       529 Feb 25 11:30 boinc_task_state.xml
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas      1039 Feb 25 11:30 memory_monitor_summary.json
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas    328820 Feb 25 11:30 log.43401121._001143.job.log.tgz.1
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas        95 Feb 25 11:30 pilot_heartbeat.json
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas      7745 Feb 25 11:30 heartbeat.json
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas        27 Feb 25 11:31 wrapper_checkpoint.txt
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 11:31 boinc_mmap_file
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas      4410 Feb 25 11:31 pilotlog.txt
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas    580815 Feb 25 11:31 log.43401121._001143.job.log.1
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas       357 Feb 25 11:31 output.list
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas       620 Feb 25 11:31 runtime_log
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas    931840 Feb 25 11:31 result.tar.gz
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas     11418 Feb 25 11:31 runtime_log.err
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas       652 Feb 25 11:31 5ScKDmEW866nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmKHwKDm7OMIRm.diag
[2025-02-25 11:31:15] -rw-r--r-- 1 boincer umatlas     21444 Feb 25 11:31 stderr.txt
[2025-02-25 11:31:15] HITS file was successfully produced:
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas 188553029 Feb 25 11:30 shared/HITS.pool.root.1
[2025-02-25 11:31:15]  *** Contents of shared directory: ***
[2025-02-25 11:31:15] total 432720
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas 253080876 Feb 25 09:51 ATLAS.root_0
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 09:51 start_atlas.sh
[2025-02-25 11:31:15] -rw-r--r-- 2 boincer umatlas    503554 Feb 25 09:51 input.tar.gz
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas 188553029 Feb 25 11:30 HITS.pool.root.1
[2025-02-25 11:31:15] -rw------- 1 boincer umatlas    931840 Feb 25 11:31 result.tar.gz
11:31:17 (2995432): run_atlas exited; CPU time 40002.362518
11:31:17 (2995432): called boinc_finish(0)

</stderr_txt>
]]>

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