Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:36:40 (7351): wrapper (7.7.26015): starting
05:36:40 (7351): wrapper: running run_atlas (--nthreads 12)
[2025-02-25 05:36:40] Arguments: --nthreads 12
[2025-02-25 05:36:40] Threads: 12
[2025-02-25 05:36:40] Checking for CVMFS
[2025-02-25 05:36:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-25 05:36:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-25 05:36:41] Running cvmfs_config stat atlas.cern.ch
[2025-02-25 05:36:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-25 05:36:41] 2.11.2.0 10300 292264 153112 143035 1 1 19241295 20275201 1 130560 0 23717376 99.986 7629169 40718 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-25 05:36:41] CVMFS is ok
[2025-02-25 05:36:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 05:36:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 05:36:41] Further information can be found at the LHC@home message board.
[2025-02-25 05:36:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 05:36:41] Checking for apptainer binary...
[2025-02-25 05:36:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-25 05:36:41] Running /usr/bin/apptainer --version
[2025-02-25 05:36:41] apptainer version 1.3.2-1.el7
[2025-02-25 05:36:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 05:36:42] c-205-30.aglt2.org
[2025-02-25 05:36:42] apptainer works
[2025-02-25 05:36:42] Set ATHENA_PROC_NUMBER=12
[2025-02-25 05:36:42] Set ATHENA_CORE_NUMBER=12
[2025-02-25 05:36:42] Starting ATLAS job with PandaID=6530092113
[2025-02-25 05:36:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 07:00:23]  *** The last 200 lines of the pilot log: ***
[2025-02-25 07:00:23]  protocol_id=None
[2025-02-25 07:00:23]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-02-25 07:00:23]  replicas=None
[2025-02-25 07:00:23]  scope=mc23_13p6TeV
[2025-02-25 07:00:23]  status=None
[2025-02-25 07:00:23]  status_code=0
[2025-02-25 07:00:23]  storage_token=
[2025-02-25 07:00:23]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6530092113/log.43401171._000139.job.log.tgz.1
[2025-02-25 07:00:23]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/b3/log.43401171._000139.job.log.tgz.1
[2025-02-25 07:00:23]  workdir=None
[2025-02-25 07:00:23] ]
[2025-02-25 07:00:23] 2025-02-25 11:59:59,267 | INFO     | transferring file log.43401171._000139.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6530092113/log.43401171._000139.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-02-25 07:00:23] 2025-02-25 11:59:59,267 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6530092113/log.43401171._000139.job.log.tgz.1 /tmp/boinchome/slots/0/log.43401171._000139.job
[2025-02-25 07:00:23] 2025-02-25 11:59:59,288 | INFO     | adding to output.list: log.43401171._000139.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bc/b3/log.43401171._000139.job.log.tg
[2025-02-25 07:00:23] 2025-02-25 11:59:59,289 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-02-25 07:00:23] 2025-02-25 11:59:59,290 | INFO     | summary of transferred files:
[2025-02-25 07:00:23] 2025-02-25 11:59:59,290 | INFO     |  -- lfn=log.43401171._000139.job.log.tgz.1, status_code=0, status=transferred
[2025-02-25 07:00:23] 2025-02-25 11:59:59,290 | INFO     | stage-out finished correctly
[2025-02-25 07:00:23] 2025-02-25 11:59:59,647 | WARNING  | process 17435 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 07:00:23] 2025-02-25 11:59:59,647 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530092113/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 07:00:23] 2025-02-25 11:59:59,708 | INFO     | number of running child processes to parent process 17435: 1
[2025-02-25 07:00:23] 2025-02-25 11:59:59,709 | INFO     | maximum number of monitored processes: 6
[2025-02-25 07:00:23] 2025-02-25 12:00:02,212 | INFO     | monitor loop #365: job 0:6530092113 is in state 'finished'
[2025-02-25 07:00:23] 2025-02-25 12:00:02,212 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 07:00:23] 2025-02-25 12:00:02,263 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-02-25 07:00:23] 2025-02-25 12:00:03,135 | INFO     | 4988s have passed since pilot start
[2025-02-25 07:00:23] 2025-02-25 12:00:04,535 | INFO     | job 6530092113 has state=finished
[2025-02-25 07:00:23] 2025-02-25 12:00:04,535 | INFO     | preparing for final server update for job 6530092113 in state='finished'
[2025-02-25 07:00:23] 2025-02-25 12:00:04,536 | INFO     | this job has now completed (state=finished)
[2025-02-25 07:00:23] 2025-02-25 12:00:04,536 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-02-25 07:00:23] 2025-02-25 12:00:04,536 | INFO     | log transfer has been attempted: DONE
[2025-02-25 07:00:23] 2025-02-25 12:00:04,536 | INFO     | job 6530092113 has finished - writing final server update
[2025-02-25 07:00:23] 2025-02-25 12:00:04,537 | INFO     | total number of processed events: 400 (read)
[2025-02-25 07:00:23] 2025-02-25 12:00:04,538 | INFO     | executing command: lscpu
[2025-02-25 07:00:23] 2025-02-25 12:00:04,564 | INFO     | found 12 cores (6 cores per socket, 2 sockets)
[2025-02-25 07:00:23] 2025-02-25 12:00:04,578 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-02-25 07:00:23] 2025-02-25 12:00:04,715 | INFO     | monitor loop #366: job 0:6530092113 is in state 'finished'
[2025-02-25 07:00:23] 2025-02-25 12:00:04,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 07:00:23] 2025-02-25 12:00:07,218 | INFO     | monitor loop #367: job 0:6530092113 is in state 'finished'
[2025-02-25 07:00:23] 2025-02-25 12:00:07,218 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-25 07:00:23] 2025-02-25 12:00:08,271 | INFO     | PID=11032 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,159 | INFO     | CPU arch script returned: x86-64-v2
[2025-02-25 07:00:23] 2025-02-25 12:00:09,159 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6530092113/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 07:00:23] 2025-02-25 12:00:09,160 | INFO     | extracted standard info from prmon json
[2025-02-25 07:00:23] 2025-02-25 12:00:09,160 | INFO     | extracted standard memory fields from prmon json
[2025-02-25 07:00:23] 2025-02-25 12:00:09,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-25 07:00:23] 2025-02-25 12:00:09,161 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-25 07:00:23] 2025-02-25 12:00:09,161 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-25 07:00:23] 2025-02-25 12:00:09,163 | INFO     | fitting pss+swap vs Time
[2025-02-25 07:00:23] 2025-02-25 12:00:09,164 | INFO     | model: linear, x: [1740480152.0, 1740480213.0, 1740480274.0, 1740480335.0, 1740480396.0, 1740480457.0, 1740480518.0, 1740480579.0, 1740480640.0, 1740480701.0, 1740
[2025-02-25 07:00:23] 2025-02-25 12:00:09,164 | INFO     | sum of square deviations: 130793150.0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,164 | INFO     | sum of deviations: 17757014172.999996
[2025-02-25 07:00:23] 2025-02-25 12:00:09,165 | INFO     | mean x: 1740482409.0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,165 | INFO     | mean y: 2623867.066666667
[2025-02-25 07:00:23] 2025-02-25 12:00:09,165 | INFO     | -- intersect: -236292402321.0034
[2025-02-25 07:00:23] 2025-02-25 12:00:09,165 | INFO     | intersect: -236292402321.0034
[2025-02-25 07:00:23] 2025-02-25 12:00:09,165 | INFO     | chi2: 2.296945930068087
[2025-02-25 07:00:23] 2025-02-25 12:00:09,166 | INFO     | -- intersect: -236292402321.0034
[2025-02-25 07:00:23] 2025-02-25 12:00:09,166 | INFO     | current memory leak: 135.76 B/s (using 75 data points, chi2=2.30)
[2025-02-25 07:00:23] 2025-02-25 12:00:09,166 | INFO     | ..............................
[2025-02-25 07:00:23] 2025-02-25 12:00:09,166 | INFO     | . Timing measurements:
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . get job = 0 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . initial setup = 2 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . payload setup = 7 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . stage-in = 0 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . payload execution = 4952 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,167 | INFO     | . stage-out = 0 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,168 | INFO     | . log creation = 0 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,168 | INFO     | ..............................
[2025-02-25 07:00:23] 2025-02-25 12:00:09,251 | INFO     | 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,251 | INFO     | job summary report
[2025-02-25 07:00:23] 2025-02-25 12:00:09,251 | INFO     | --------------------------------------------------
[2025-02-25 07:00:23] 2025-02-25 12:00:09,251 | INFO     | PanDA job id: 6530092113
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | task id: 43401171
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | errors: (none)
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | pilot state: finished 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | transexitcode: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,252 | INFO     | exeerrorcode: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | exeerrordiag: 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | exitcode: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | exitmsg: OK
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | cpuconsumptiontime: 47917 s
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | nevents: 400
[2025-02-25 07:00:23] 2025-02-25 12:00:09,253 | INFO     | neventsw: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | pid: 17435
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | pgrp: 17435
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | corecount: 12
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | event service: False
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | sizes: {0: 2383181, 1: 2383380, 6: 2383586, 11: 2383614, 4964: 2409694, 4965: 2418635, 4968: 2418819, 4975: 2418989}
[2025-02-25 07:00:23] 2025-02-25 12:00:09,254 | INFO     | --------------------------------------------------
[2025-02-25 07:00:23] 2025-02-25 12:00:09,255 | INFO     | 
[2025-02-25 07:00:23] 2025-02-25 12:00:09,255 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-25 07:00:23] 2025-02-25 12:00:09,278 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,279 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,279 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,279 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,279 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,279 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,280 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 07:00:23] 2025-02-25 12:00:09,281 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 07:00:23] 2025-02-25 12:00:09,282 | INFO     | job 6530092113 has completed (purged errors)
[2025-02-25 07:00:23] 2025-02-25 12:00:09,282 | INFO     | overall cleanup function is called
[2025-02-25 07:00:23] 2025-02-25 12:00:10,290 | INFO     | --- collectZombieJob: --- 10, [17435]
[2025-02-25 07:00:23] 2025-02-25 12:00:10,290 | INFO     | zombie collector waiting for pid 17435
[2025-02-25 07:00:23] 2025-02-25 12:00:10,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 07:00:23] 2025-02-25 12:00:10,291 | INFO     | collected zombie processes
[2025-02-25 07:00:23] 2025-02-25 12:00:10,291 | INFO     | will attempt to kill all subprocesses of pid=17435
[2025-02-25 07:00:23] 2025-02-25 12:00:10,414 | INFO     | process IDs to be killed: [17435] (in reverse order)
[2025-02-25 07:00:23] 2025-02-25 12:00:10,463 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 07:00:23] 2025-02-25 12:00:10,463 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 07:00:23] 2025-02-25 12:00:10,467 | INFO     | did not find any defunct processes belonging to 17435
[2025-02-25 07:00:23] 2025-02-25 12:00:10,470 | INFO     | did not find any defunct processes belonging to 17435
[2025-02-25 07:00:23] 2025-02-25 12:00:10,471 | INFO     | ready for new job
[2025-02-25 07:00:23] 2025-02-25 12:00:10,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 07:00:23] 2025-02-25 12:00:10,472 | INFO     | **************************************
[2025-02-25 07:00:23] 2025-02-25 12:00:10,472 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 07:00:23] 2025-02-25 12:00:10,472 | INFO     | **************************************
[2025-02-25 07:00:23] 2025-02-25 12:00:10,472 | INFO     | 
[2025-02-25 07:00:23] 2025-02-25 12:00:10,473 | INFO     | architecture information:
[2025-02-25 07:00:23] 2025-02-25 12:00:10,473 | INFO     | executing command: cat /etc/os-release
[2025-02-25 07:00:23] 2025-02-25 12:00:10,487 | INFO     | cat /etc/os-release:
[2025-02-25 07:00:23] NAME="CentOS Linux"
[2025-02-25 07:00:23] VERSION="7 (Core)"
[2025-02-25 07:00:23] ID="centos"
[2025-02-25 07:00:23] ID_LIKE="rhel fedora"
[2025-02-25 07:00:23] VERSION_ID="7"
[2025-02-25 07:00:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 07:00:23] ANSI_COLOR="0;31"
[2025-02-25 07:00:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 07:00:23] HOME_URL="https://www.centos.org/"
[2025-02-25 07:00:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 07:00:23] 
[2025-02-25 07:00:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 07:00:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 07:00:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 07:00:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 07:00:23] 
[2025-02-25 07:00:23] 2025-02-25 12:00:10,487 | INFO     | **************************************
[2025-02-25 07:00:23] 2025-02-25 12:00:10,990 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-25 07:00:23] 2025-02-25 12:00:11,005 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-02-25 07:00:23] 2025-02-25 12:00:11,006 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 07:00:23] 2025-02-25 12:00:11,006 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 07:00:23] 2025-02-25 12:00:11,006 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 07:00:23] 2025-02-25 12:00:11,007 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 07:00:23] 2025-02-25 12:00:11,007 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 07:00:23] 2025-02-25 12:00:11,007 | INFO     | aborting loop
[2025-02-25 07:00:23] 2025-02-25 12:00:11,008 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 07:00:23] 2025-02-25 12:00:11,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 07:00:23] 2025-02-25 12:00:11,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 07:00:23] 2025-02-25 12:00:11,858 | INFO     | all data control threads have been joined
[2025-02-25 07:00:23] 2025-02-25 12:00:12,009 | INFO     | [job] retrieve thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,011 | INFO     | [job] queue monitor thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,013 | INFO     | [job] job monitor thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,082 | INFO     | [payload] failed_post thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,087 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,239 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,247 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,264 | INFO     | all payload control threads have been joined
[2025-02-25 07:00:23] 2025-02-25 12:00:12,278 | INFO     | all job control threads have been joined
[2025-02-25 07:00:23] 2025-02-25 12:00:12,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 07:00:23] 2025-02-25 12:00:12,560 | INFO     | [data] copytool_in thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,857 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 07:00:23] 2025-02-25 12:00:12,864 | INFO     | [data] control thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:12,981 | INFO     | [payload] validate_post thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:13,076 | INFO     | [job] validate thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:13,269 | INFO     | [payload] control thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:13,283 | INFO     | [job] control thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:13,472 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:14,391 | INFO     | [data] copytool_out thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:16,859 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 07:00:23] 2025-02-25 12:00:18,510 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140031512184640)>', '<ExcThread(monitor, started 140030915876608)>']
[2025-02-25 07:00:23] 2025-02-25 12:00:19,039 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 07:00:23] 2025-02-25 12:00:19,039 | INFO     | [monitor] control thread has ended
[2025-02-25 07:00:23] 2025-02-25 12:00:23,515 | INFO     | all workflow threads have been joined
[2025-02-25 07:00:23] 2025-02-25 12:00:23,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 07:00:23] 2025-02-25 12:00:23,515 | INFO     | traces error code: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:23,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 07:00:23] 2025-02-25 12:00:23,598 [wrapper] ==== pilot stdout END ====
[2025-02-25 07:00:23] 2025-02-25 12:00:23,603 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 07:00:23] 2025-02-25 12:00:23,606 [wrapper] pilotpid: 11032
[2025-02-25 07:00:23] 2025-02-25 12:00:23,610 [wrapper] Pilot exit status: 0
[2025-02-25 07:00:23] 2025-02-25 12:00:23,624 [wrapper] pandaids: 6530092113
[2025-02-25 07:00:23] 2025-02-25 12:00:23,665 [wrapper] cleanup supervisor_pilot  1259 11033
[2025-02-25 07:00:23] 2025-02-25 12:00:23,669 [wrapper] Test setup, not cleaning
[2025-02-25 07:00:23] 2025-02-25 12:00:23,676 [wrapper] apfmon messages muted
[2025-02-25 07:00:23] 2025-02-25 12:00:23,680 [wrapper] ==== wrapper stdout END ====
[2025-02-25 07:00:23] 2025-02-25 12:00:23,684 [wrapper] ==== wrapper stderr END ====
[2025-02-25 07:00:23]  *** Error codes and diagnostics ***
[2025-02-25 07:00:23]     "exeErrorCode": 0,
[2025-02-25 07:00:23]     "exeErrorDiag": "",
[2025-02-25 07:00:23]     "pilotErrorCode": 0,
[2025-02-25 07:00:23]     "pilotErrorDiag": "",
[2025-02-25 07:00:23]  *** Listing of results directory ***
[2025-02-25 07:00:23] total 431748
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas    491065 Feb 25 05:12 pilot3.tar.gz
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas      5118 Feb 25 05:33 queuedata.json
[2025-02-25 07:00:23] -rwx------ 1 boincer umatlas     35865 Feb 25 05:35 runpilot2-wrapper.sh
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas       100 Feb 25 05:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 07:00:23] -rwxr-xr-x 1 boincer umatlas      7986 Feb 25 05:36 run_atlas
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas       105 Feb 25 05:36 job.xml
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas 249736971 Feb 25 05:36 EVNT.43401169._000006.pool.root.1
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 05:36 start_atlas.sh
[2025-02-25 07:00:23] drwxrwx--x 2 boincer umatlas      4096 Feb 25 05:36 shared
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas    503554 Feb 25 05:36 input.tar.gz
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas         0 Feb 25 05:36 boinc_lockfile
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas      2540 Feb 25 05:36 pandaJob.out
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas       424 Feb 25 05:36 setup.sh.local
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas    988817 Feb 25 05:36 agis_schedconf.cvmfs.json
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas   1582519 Feb 25 05:36 agis_ddmendpoints.agis.ALL.json
[2025-02-25 07:00:23] drwx------ 4 boincer umatlas      4096 Feb 25 05:36 pilot3
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas      5868 Feb 25 06:57 init_data.xml
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas       529 Feb 25 06:59 boinc_task_state.xml
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas 186905544 Feb 25 06:59 HITS.43401171._000139.pool.root.1
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas      1044 Feb 25 06:59 memory_monitor_summary.json
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas    366916 Feb 25 06:59 log.43401171._000139.job.log.tgz.1
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas        95 Feb 25 07:00 pilot_heartbeat.json
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas      8192 Feb 25 07:00 boinc_mmap_file
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas        27 Feb 25 07:00 wrapper_checkpoint.txt
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas      7759 Feb 25 07:00 heartbeat.json
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas      4338 Feb 25 07:00 pilotlog.txt
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas    466430 Feb 25 07:00 log.43401171._000139.job.log.1
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas       357 Feb 25 07:00 output.list
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas       620 Feb 25 07:00 runtime_log
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas    849920 Feb 25 07:00 result.tar.gz
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas     11015 Feb 25 07:00 runtime_log.err
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas       658 Feb 25 07:00 kiiNDm6S766nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmB9vKDmPgw2Co.diag
[2025-02-25 07:00:23] -rw-r--r-- 1 boincer umatlas     21987 Feb 25 07:00 stderr.txt
[2025-02-25 07:00:23] HITS file was successfully produced:
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas 186905544 Feb 25 06:59 shared/HITS.pool.root.1
[2025-02-25 07:00:23]  *** Contents of shared directory: ***
[2025-02-25 07:00:23] total 427760
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas 249736971 Feb 25 05:36 ATLAS.root_0
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas     17569 Feb 25 05:36 start_atlas.sh
[2025-02-25 07:00:23] -rw-r--r-- 2 boincer umatlas    503554 Feb 25 05:36 input.tar.gz
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas 186905544 Feb 25 06:59 HITS.pool.root.1
[2025-02-25 07:00:23] -rw------- 1 boincer umatlas    849920 Feb 25 07:00 result.tar.gz
07:00:25 (7351): run_atlas exited; CPU time 47852.520368
07:00:25 (7351): called boinc_finish(0)

</stderr_txt>
]]>

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