Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-25 05:57:10 (18632): Detected: vboxwrapper 26206
2025-02-25 05:57:10 (18632): Detected: BOINC client v7.16.20
2025-02-25 05:57:10 (18632): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-02-25 05:57:11 (18632): Successfully copied 'init_data.xml' to the shared directory.
2025-02-25 05:57:11 (18632): Create VM. (boinc_be3296bcd47c4e56, slot#1)
2025-02-25 05:57:12 (18632): Setting Memory Size for VM. (4800MB)
2025-02-25 05:57:12 (18632): Setting CPU Count for VM. (8)
2025-02-25 05:57:12 (18632): Setting Chipset Options for VM.
2025-02-25 05:57:12 (18632): Setting Graphics Controller Options for VM.
2025-02-25 05:57:13 (18632): Setting Boot Options for VM.
2025-02-25 05:57:13 (18632): Setting Network Configuration for NAT.
2025-02-25 05:57:13 (18632): Enabling VM Network Access.
2025-02-25 05:57:14 (18632): Disabling USB Support for VM.
2025-02-25 05:57:14 (18632): Disabling COM Port Support for VM.
2025-02-25 05:57:14 (18632): Disabling LPT Port Support for VM.
2025-02-25 05:57:14 (18632): Disabling Audio Support for VM.
2025-02-25 05:57:15 (18632): Disabling Clipboard Support for VM.
2025-02-25 05:57:15 (18632): Disabling Drag and Drop Support for VM.
2025-02-25 05:57:15 (18632): Adding storage controller(s) to VM.
2025-02-25 05:57:15 (18632): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-25 05:57:16 (18632): Adding VirtualBox Guest Additions to VM.
2025-02-25 05:57:16 (18632): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-25 05:57:16 (18632): forwarding host port 52770 to guest port 80
2025-02-25 05:57:17 (18632): Enabling remote desktop for VM.
2025-02-25 05:57:17 (18632): Required extension pack not installed, remote desktop not enabled.
2025-02-25 05:57:17 (18632): Enabling shared directory for VM.
2025-02-25 05:57:17 (18632): Starting VM using VBoxManage interface. (boinc_be3296bcd47c4e56, slot#1)
2025-02-25 05:57:21 (18632): Successfully started VM. (PID = '24156')
2025-02-25 05:57:21 (18632): Reporting VM Process ID to BOINC.
2025-02-25 05:57:21 (18632): Guest Log: BIOS: VirtualBox 6.1.50
2025-02-25 05:57:21 (18632): Guest Log: CPUID EDX: 0x178bfbff
2025-02-25 05:57:21 (18632): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-25 05:57:21 (18632): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-25 05:57:21 (18632): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-25 05:57:21 (18632): Detected: Web Application Enabled (http://localhost:52770)
2025-02-25 05:57:21 (18632): Preference change detected
2025-02-25 05:57:21 (18632): Setting CPU throttle for VM. (100%)
2025-02-25 05:57:22 (18632): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-25 05:57:24 (18632): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-25 05:57:24 (18632): Guest Log: BIOS: Booting from Hard Disk...
2025-02-25 05:57:26 (18632): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-25 05:57:26 (18632): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-25 05:57:26 (18632): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-25 05:57:34 (18632): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-25 05:57:34 (18632): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-25 05:57:39 (18632): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000138 main     Log opened 2025-02-25T05:57:36.100790000Z
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000214 main     OS Product: Linux
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000234 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000249 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000264 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000265 main     Process ID: 1367
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.000265 main     Package type: LINUX_64BITS_GENERIC
2025-02-25 05:57:39 (18632): Guest Log: 00:00:00.001939 main     5.2.32 r132073 started. Verbose level = 0
2025-02-25 05:57:39 (18632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-25 05:57:39 (18632): Guest Log: [INFO] Mounting shared directory
2025-02-25 05:57:39 (18632): Guest Log: [INFO] Checking for init_data.xml
2025-02-25 05:57:41 (18632): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-25 05:57:41 (18632): Guest Log: [INFO] Detected branch: prod
2025-02-25 05:57:41 (18632): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-25 05:57:41 (18632): Guest Log: Copying input files
2025-02-25 05:57:42 (18632): Guest Log: Copied input files into RunAtlas.
2025-02-25 05:57:42 (18632): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-25 05:57:42 (18632): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-25 05:57:42 (18632): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-25 05:57:42 (18632): Guest Log: Further information can be found at the LHC@home message board.
2025-02-25 05:57:49 (18632): Guest Log: 00:00:10.014844 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 943 044 000ns (GuestNow=1 740 459 468 161 184 000 ns GuestLast=1 740 463 056 104 228 000 ns fSetTimeLastLoop=true )
2025-02-25 05:57:50 (18632): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-25 05:57:50 (18632): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-25 05:57:50 (18632): Guest Log: 2.6.3.0 1644 0 32216 143027 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-25 05:57:51 (18632): Guest Log: copied the webapp to /var/www
2025-02-25 05:57:51 (18632): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-25 05:57:51 (18632): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-25 05:57:51 (18632): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-25 05:57:51 (18632): Guest Log:  *** Starting ATLAS job. (PandaID=6522371632 taskID=43078919) ***
2025-02-25 07:37:30 (18632): Status Report: Elapsed Time: '6000.000000'
2025-02-25 07:37:30 (18632): Status Report: CPU Time: '40479.406250'
2025-02-25 08:36:16 (18632): Guest Log:  *** Job finished ***
2025-02-25 08:36:16 (18632): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:35:59,391 | INFO     | [data] queue_monitor thread has finished
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:02,879 | INFO     | job.realtimelogging is not enabled
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:03,880 | INFO     | [payload] run_realtimelog thread has finished
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:05,931 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139772699584320)>', '<ExcThread(monitor, started 139771523364608)>']
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:06,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:06,155 | INFO     | [monitor] control thread has ended
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:10,972 | INFO     | all workflow threads have been joined
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:10,972 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:10,972 | INFO     | traces error code: 0
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:10,972 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,056 [wrapper] ==== pilot stdout END ====
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,061 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,065 [wrapper] pilotpid: 6007
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,070 [wrapper] Pilot exit status: 0
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,149 [wrapper] pandaids: 6522371632
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,183 [wrapper] cleanup supervisor_pilot  8612 6008
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,190 [wrapper] Test setup, not cleaning
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,202 [wrapper] apfmon messages muted
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,206 [wrapper] ==== wrapper stdout END ====
2025-02-25 08:36:16 (18632): Guest Log: 2025-02-25 07:36:11,214 [wrapper] ==== wrapper stderr END ====
2025-02-25 08:36:16 (18632): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 08:36:16 (18632): Guest Log:     "exeErrorCode": 0,
2025-02-25 08:36:16 (18632): Guest Log:     "exeErrorDiag": "",
2025-02-25 08:36:16 (18632): Guest Log:     "pilotErrorCode": 0,
2025-02-25 08:36:16 (18632): Guest Log:     "pilotErrorDiag": "",
2025-02-25 08:36:16 (18632): Guest Log:  *** Listing of results directory ***
2025-02-25 08:36:16 (18632): Guest Log: total 321264
2025-02-25 08:36:16 (18632): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 21 15:37 pilot3.tar.gz
2025-02-25 08:36:16 (18632): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 21 16:03 queuedata.json
2025-02-25 08:36:16 (18632): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 21 16:04 runpilot2-wrapper.sh
2025-02-25 08:36:16 (18632): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 25 04:57 start_atlas.sh
2025-02-25 08:36:16 (18632): Guest Log: -rwxr-xr-x. 1 atlas atlas    503557 Feb 25 04:57 input.tar.gz
2025-02-25 08:36:16 (18632): Guest Log: -rwxr-xr-x. 1 atlas atlas      6150 Feb 25 04:57 init_data.xml
2025-02-25 08:36:16 (18632): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 25 04:57 EVNT.43078917._002441.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 08:36:16 (18632): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 25 04:57 pandaJob.out
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas       424 Feb 25 04:57 setup.sh.local
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas    988867 Feb 25 04:58 agis_schedconf.cvmfs.json
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 25 04:58 agis_ddmendpoints.agis.ALL.json
2025-02-25 08:36:16 (18632): Guest Log: drwx------. 4 atlas atlas      4096 Feb 25 04:58 pilot3
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas        95 Feb 25 07:35 pilot_heartbeat.json
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas 322988886 Feb 25 07:35 HITS.43078919._084290.pool.root.1
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 25 07:35 memory_monitor_summary.json
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas    336941 Feb 25 07:35 log.43078919._084290.job.log.tgz.1
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas      7707 Feb 25 07:35 heartbeat.json
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas      4470 Feb 25 07:36 pilotlog.txt
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas    790038 Feb 25 07:36 log.43078919._084290.job.log.1
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas       357 Feb 25 07:36 output.list
2025-02-25 08:36:16 (18632): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 25 07:36 runtime_log
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas   1146880 Feb 25 07:36 result.tar.gz
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas       654 Feb 25 07:36 smGODmShk56n9Rq4apOajLDm4fhM0noT9bVoFjIUDm7XdKDmfDFIUn.diag
2025-02-25 08:36:16 (18632): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Feb 25 07:36 runtime_log.err
2025-02-25 08:36:16 (18632): Guest Log: Looking for outputfile HITS.43078919._084290.pool.root.1
2025-02-25 08:36:16 (18632): Guest Log: HITS file was successfully produced
2025-02-25 08:36:16 (18632): Guest Log: -rw-------. 1 atlas atlas 322988886 Feb 25 07:35 /home/atlas/RunAtlas/HITS.43078919._084290.pool.root.1
2025-02-25 08:36:18 (18632): Guest Log: Successfully finished the ATLAS job!
2025-02-25 08:36:18 (18632): Guest Log: Copying the results back to the shared directory!
2025-02-25 08:36:18 (18632): Guest Log:  *** Contents of shared directory: ***
2025-02-25 08:36:18 (18632): Guest Log: total 652972
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root 343973508 Feb 25 04:57 ATLAS.root_0
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root 322988886 Feb 25  2025 HITS.pool.root.1
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root      6150 Feb 25 04:57 init_data.xml
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root    503557 Feb 24 15:41 input.tar.gz
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root   1146880 Feb 25  2025 result.tar.gz
2025-02-25 08:36:18 (18632): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 15:41 start_atlas.sh
2025-02-25 08:36:18 (18632): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 08:36:18 (18632): VM Completion File Detected.
2025-02-25 08:36:18 (18632): Powering off VM.
2025-02-25 08:36:19 (18632): Successfully stopped VM.
2025-02-25 08:36:19 (18632): Deregistering VM. (boinc_be3296bcd47c4e56, slot#1)
2025-02-25 08:36:19 (18632): Removing network bandwidth throttle group from VM.
2025-02-25 08:36:19 (18632): Removing VM from VirtualBox.
08:36:25 (18632): called boinc_finish(0)

</stderr_txt>
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