Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 19:57:29 (3296): Detected: vboxwrapper 26206
2025-02-24 19:57:29 (3296): Detected: BOINC client v7.16.20
2025-02-24 19:57:30 (3296): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-02-24 19:57:30 (3296): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 19:57:30 (3296): Create VM. (boinc_00c38e682ea85004, slot#2)
2025-02-24 19:57:31 (3296): Setting Memory Size for VM. (4800MB)
2025-02-24 19:57:31 (3296): Setting CPU Count for VM. (8)
2025-02-24 19:57:31 (3296): Setting Chipset Options for VM.
2025-02-24 19:57:32 (3296): Setting Graphics Controller Options for VM.
2025-02-24 19:57:32 (3296): Setting Boot Options for VM.
2025-02-24 19:57:32 (3296): Setting Network Configuration for NAT.
2025-02-24 19:57:33 (3296): Enabling VM Network Access.
2025-02-24 19:57:33 (3296): Disabling USB Support for VM.
2025-02-24 19:57:33 (3296): Disabling COM Port Support for VM.
2025-02-24 19:57:33 (3296): Disabling LPT Port Support for VM.
2025-02-24 19:57:34 (3296): Disabling Audio Support for VM.
2025-02-24 19:57:34 (3296): Disabling Clipboard Support for VM.
2025-02-24 19:57:34 (3296): Disabling Drag and Drop Support for VM.
2025-02-24 19:57:34 (3296): Adding storage controller(s) to VM.
2025-02-24 19:57:35 (3296): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 19:57:35 (3296): Adding VirtualBox Guest Additions to VM.
2025-02-24 19:57:35 (3296): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 19:57:36 (3296): forwarding host port 64148 to guest port 80
2025-02-24 19:57:36 (3296): Enabling remote desktop for VM.
2025-02-24 19:57:36 (3296): Required extension pack not installed, remote desktop not enabled.
2025-02-24 19:57:36 (3296): Enabling shared directory for VM.
2025-02-24 19:57:37 (3296): Starting VM using VBoxManage interface. (boinc_00c38e682ea85004, slot#2)
2025-02-24 19:57:40 (3296): Successfully started VM. (PID = '5152')
2025-02-24 19:57:40 (3296): Reporting VM Process ID to BOINC.
2025-02-24 19:57:40 (3296): Guest Log: BIOS: VirtualBox 6.1.50
2025-02-24 19:57:40 (3296): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 19:57:40 (3296): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 19:57:40 (3296): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 19:57:40 (3296): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 19:57:40 (3296): Detected: Web Application Enabled (http://localhost:64148)
2025-02-24 19:57:40 (3296): Preference change detected
2025-02-24 19:57:40 (3296): Setting CPU throttle for VM. (100%)
2025-02-24 19:57:41 (3296): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 19:57:42 (3296): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 19:57:42 (3296): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 19:57:45 (3296): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 19:57:45 (3296): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 19:57:45 (3296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 19:57:51 (3296): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 19:57:51 (3296): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 19:57:55 (3296): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000078 main     Log opened 2025-02-24T19:57:53.514981000Z
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000149 main     OS Product: Linux
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000168 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000184 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000199 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000199 main     Process ID: 1365
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000200 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 19:57:55 (3296): Guest Log: 00:00:00.000638 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 19:57:55 (3296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 19:57:55 (3296): Guest Log: [INFO] Mounting shared directory
2025-02-24 19:57:55 (3296): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 19:57:57 (3296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 19:57:57 (3296): Guest Log: [INFO] Detected branch: prod
2025-02-24 19:57:57 (3296): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 19:57:57 (3296): Guest Log: Copying input files
2025-02-24 19:57:59 (3296): Guest Log: Copied input files into RunAtlas.
2025-02-24 19:57:59 (3296): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 19:57:59 (3296): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 19:57:59 (3296): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 19:57:59 (3296): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 19:58:06 (3296): Guest Log: 00:00:10.011033 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 930 167 000ns (GuestNow=1 740 423 485 586 368 000 ns GuestLast=1 740 427 073 516 535 000 ns fSetTimeLastLoop=true )
2025-02-24 19:58:08 (3296): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 19:58:08 (3296): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 19:58:08 (3296): Guest Log: 2.6.3.0 1641 0 32200 143011 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 19:58:10 (3296): Guest Log: copied the webapp to /var/www
2025-02-24 19:58:10 (3296): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-24 19:58:10 (3296): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-24 19:58:10 (3296): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 19:58:10 (3296): Guest Log:  *** Starting ATLAS job. (PandaID=6522582833 taskID=43205094) ***
2025-02-24 21:37:55 (3296): Status Report: Elapsed Time: '6000.000000'
2025-02-24 21:37:55 (3296): Status Report: CPU Time: '41419.046875'
2025-02-24 22:36:57 (3296): Guest Log:  *** Job finished ***
2025-02-24 22:36:57 (3296): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:38,171 | INFO     | [data] queue_monitor thread has finished
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:44,479 | INFO     | job.realtimelogging is not enabled
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:45,485 | INFO     | [payload] run_realtimelog thread has finished
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:46,363 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140380328433472)>', '<ExcThread(monitor, started 140379437385472)>']
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:47,158 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:47,158 | INFO     | [monitor] control thread has ended
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,403 | INFO     | all workflow threads have been joined
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,403 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,403 | INFO     | traces error code: 0
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,403 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,455 [wrapper] ==== pilot stdout END ====
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,459 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,462 [wrapper] pilotpid: 6000
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,465 [wrapper] Pilot exit status: 0
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,647 [wrapper] pandaids: 6522582833
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,667 [wrapper] cleanup supervisor_pilot  8557 6001
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,670 [wrapper] Test setup, not cleaning
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,677 [wrapper] apfmon messages muted
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,680 [wrapper] ==== wrapper stdout END ====
2025-02-24 22:36:57 (3296): Guest Log: 2025-02-24 21:36:51,683 [wrapper] ==== wrapper stderr END ====
2025-02-24 22:36:57 (3296): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 22:36:57 (3296): Guest Log:     "exeErrorCode": 0,
2025-02-24 22:36:57 (3296): Guest Log:     "exeErrorDiag": "",
2025-02-24 22:36:57 (3296): Guest Log:     "pilotErrorCode": 0,
2025-02-24 22:36:57 (3296): Guest Log:     "pilotErrorDiag": "",
2025-02-24 22:36:57 (3296): Guest Log:  *** Listing of results directory ***
2025-02-24 22:36:57 (3296): Guest Log: total 324988
2025-02-24 22:36:57 (3296): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 01:23 pilot3.tar.gz
2025-02-24 22:36:57 (3296): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 01:27 runpilot2-wrapper.sh
2025-02-24 22:36:57 (3296): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 01:27 queuedata.json
2025-02-24 22:36:57 (3296): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 18:57 start_atlas.sh
2025-02-24 22:36:57 (3296): Guest Log: -rwxr-xr-x. 1 atlas atlas    503549 Feb 24 18:57 input.tar.gz
2025-02-24 22:36:57 (3296): Guest Log: -rwxr-xr-x. 1 atlas atlas      8764 Feb 24 18:57 init_data.xml
2025-02-24 22:36:57 (3296): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 18:57 EVNT.43092757._002062.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 22:36:57 (3296): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 24 18:58 pandaJob.out
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 18:58 setup.sh.local
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas    987749 Feb 24 18:58 agis_schedconf.cvmfs.json
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 18:58 agis_ddmendpoints.agis.ALL.json
2025-02-24 22:36:57 (3296): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 18:58 pilot3
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas 326836172 Feb 24 21:35 HITS.43205094._034515.pool.root.1
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 24 21:36 memory_monitor_summary.json
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas    331919 Feb 24 21:36 log.43205094._034515.job.log.tgz.1
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 21:36 pilot_heartbeat.json
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas      7708 Feb 24 21:36 heartbeat.json
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas      4663 Feb 24 21:36 pilotlog.txt
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas    776042 Feb 24 21:36 log.43205094._034515.job.log.1
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 21:36 output.list
2025-02-24 22:36:57 (3296): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 21:36 runtime_log
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas   1126400 Feb 24 21:36 result.tar.gz
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas       654 Feb 24 21:36 WtrMDmEUt56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdHtKDmARbb4m.diag
2025-02-24 22:36:57 (3296): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Feb 24 21:36 runtime_log.err
2025-02-24 22:36:57 (3296): Guest Log: Looking for outputfile HITS.43205094._034515.pool.root.1
2025-02-24 22:36:57 (3296): Guest Log: HITS file was successfully produced
2025-02-24 22:36:57 (3296): Guest Log: -rw-------. 1 atlas atlas 326836172 Feb 24 21:35 /home/atlas/RunAtlas/HITS.43205094._034515.pool.root.1
2025-02-24 22:36:57 (3296): Guest Log: Successfully finished the ATLAS job!
2025-02-24 22:36:57 (3296): Guest Log: Copying the results back to the shared directory!
2025-02-24 22:36:57 (3296): Guest Log:  *** Contents of shared directory: ***
2025-02-24 22:36:57 (3296): Guest Log: total 653812
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root 341000934 Feb 24 18:57 ATLAS.root_0
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root 326836172 Feb 24  2025 HITS.pool.root.1
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root      8764 Feb 24 18:57 init_data.xml
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root    503549 Feb 24 11:59 input.tar.gz
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root   1126400 Feb 24  2025 result.tar.gz
2025-02-24 22:36:57 (3296): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 11:59 start_atlas.sh
2025-02-24 22:36:57 (3296): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 22:36:57 (3296): VM Completion File Detected.
2025-02-24 22:36:57 (3296): Powering off VM.
2025-02-24 22:36:58 (3296): Successfully stopped VM.
2025-02-24 22:36:58 (3296): Deregistering VM. (boinc_00c38e682ea85004, slot#2)
2025-02-24 22:36:58 (3296): Removing network bandwidth throttle group from VM.
2025-02-24 22:36:58 (3296): Removing VM from VirtualBox.
22:37:04 (3296): called boinc_finish(0)

</stderr_txt>
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