Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:56:32 (225400): wrapper (7.7.26015): starting
01:56:32 (225400): wrapper: running run_atlas (--nthreads 8)
[2025-02-24 01:56:32] Arguments: --nthreads 8
[2025-02-24 01:56:32] Threads: 8
[2025-02-24 01:56:32] Checking for CVMFS
[2025-02-24 01:56:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-24 01:56:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-24 01:56:33] Running cvmfs_config stat atlas.cern.ch
[2025-02-24 01:56:33] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/minerva.osgstorage.org: Transport endpoint is not connected
[2025-02-24 01:56:33] 
[2025-02-24 01:56:33] CVMFS is ok
[2025-02-24 01:56:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-24 01:56:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-24 01:56:33] Further information can be found at the LHC@home message board.
[2025-02-24 01:56:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-24 01:56:33] Checking for apptainer binary...
[2025-02-24 01:56:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-24 01:56:33] Running /usr/bin/apptainer --version
[2025-02-24 01:56:33] apptainer version 1.3.2-1.el7
[2025-02-24 01:56:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-24 01:56:36] c-211-33-2.aglt2.org
[2025-02-24 01:56:36] apptainer works
[2025-02-24 01:56:36] Set ATHENA_PROC_NUMBER=8
[2025-02-24 01:56:36] Set ATHENA_CORE_NUMBER=8
[2025-02-24 01:56:36] Starting ATLAS job with PandaID=6527883902
[2025-02-24 01:56:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:40:12 (225400): BOINC client no longer exists - exiting
07:40:12 (225400): timer handler: client dead, exiting
07:49:17 (322500): wrapper (7.7.26015): starting
07:49:17 (322500): wrapper: running run_atlas (--nthreads 8)
[2025-02-24 07:49:17] Arguments: --nthreads 8
[2025-02-24 07:49:17] Threads: 8
[2025-02-24 07:49:17] This job has been restarted, cleaning up previous attempt
[2025-02-24 07:49:17] Checking for CVMFS
[2025-02-24 07:49:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-24 07:49:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-24 07:49:18] Running cvmfs_config stat atlas.cern.ch
[2025-02-24 07:49:19] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/minerva.osgstorage.org: Transport endpoint is not connected
[2025-02-24 07:49:19] 
[2025-02-24 07:49:19] CVMFS is ok
[2025-02-24 07:49:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-24 07:49:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-24 07:49:19] Further information can be found at the LHC@home message board.
[2025-02-24 07:49:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-24 07:49:19] Checking for apptainer binary...
[2025-02-24 07:49:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-24 07:49:19] Running /usr/bin/apptainer --version
[2025-02-24 07:49:19] apptainer version 1.3.2-1.el7
[2025-02-24 07:49:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-24 07:49:30] c-211-33-2.aglt2.org
[2025-02-24 07:49:30] apptainer works
[2025-02-24 07:49:30] Set ATHENA_PROC_NUMBER=8
[2025-02-24 07:49:30] Set ATHENA_CORE_NUMBER=8
[2025-02-24 07:49:30] Starting ATLAS job with PandaID=6527883902
[2025-02-24 07:49:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-24 15:12:58]  *** The last 200 lines of the pilot log: ***
[2025-02-24 15:12:58] 2025-02-24 20:12:45,655 | INFO     | model: linear, x: [1740401608.0, 1740401669.0, 1740401730.0, 1740401791.0, 1740401852.0, 1740401913.0, 1740401974.0, 1740402035.0, 1740402096.0, 1740402157.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,656 | INFO     | sum of square deviations: 24140802172.252888
[2025-02-24 15:12:58] 2025-02-24 20:12:45,660 | INFO     | sum of deviations: 456069580423.2155
[2025-02-24 15:12:58] 2025-02-24 20:12:45,660 | INFO     | mean x: 1740414601.1920376
[2025-02-24 15:12:58] 2025-02-24 20:12:45,660 | INFO     | mean y: 2477194.5339578455
[2025-02-24 15:12:58] 2025-02-24 20:12:45,660 | INFO     | -- intersect: -32877546893.498055
[2025-02-24 15:12:58] 2025-02-24 20:12:45,660 | INFO     | intersect: -32877546893.498055
[2025-02-24 15:12:58] 2025-02-24 20:12:45,661 | INFO     | chi2: 8.1908432250508
[2025-02-24 15:12:58] 2025-02-24 20:12:45,661 | INFO     | current chi2=8.1908432250508 (change=9.443619638776296 %)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,661 | INFO     | right removable region: 426
[2025-02-24 15:12:58] 2025-02-24 20:12:45,662 | INFO     | model: linear, x: [1740401913.0, 1740401974.0, 1740402035.0, 1740402096.0, 1740402157.0, 1740402218.0, 1740402279.0, 1740402340.0, 1740402401.0, 1740402462.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,662 | INFO     | sum of square deviations: 24140752152.252888
[2025-02-24 15:12:58] 2025-02-24 20:12:45,666 | INFO     | sum of deviations: 293528991768.9504
[2025-02-24 15:12:58] 2025-02-24 20:12:45,666 | INFO     | mean x: 1740414906.1920376
[2025-02-24 15:12:58] 2025-02-24 20:12:45,666 | INFO     | mean y: 2496923.573770492
[2025-02-24 15:12:58] 2025-02-24 20:12:45,666 | INFO     | -- intersect: -21159322287.868073
[2025-02-24 15:12:58] 2025-02-24 20:12:45,666 | INFO     | intersect: -21159322287.868073
[2025-02-24 15:12:58] 2025-02-24 20:12:45,667 | INFO     | chi2: 5.2154446915146355
[2025-02-24 15:12:58] 2025-02-24 20:12:45,667 | INFO     | current chi2=5.2154446915146355 (change=42.33905102794894 %)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,667 | INFO     | model: linear, x: [1740402218.0, 1740402279.0, 1740402340.0, 1740402401.0, 1740402462.0, 1740402523.0, 1740402584.0, 1740402645.0, 1740402706.0, 1740402767.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,668 | INFO     | sum of square deviations: 23302562589.566315
[2025-02-24 15:12:58] 2025-02-24 20:12:45,671 | INFO     | sum of deviations: 192087940847.02115
[2025-02-24 15:12:58] 2025-02-24 20:12:45,672 | INFO     | mean x: 1740415058.6943128
[2025-02-24 15:12:58] 2025-02-24 20:12:45,672 | INFO     | mean y: 2515374.883886256
[2025-02-24 15:12:58] 2025-02-24 20:12:45,672 | INFO     | -- intersect: -14344093224.868399
[2025-02-24 15:12:58] 2025-02-24 20:12:45,672 | INFO     | intersect: -14344093224.868399
[2025-02-24 15:12:58] 2025-02-24 20:12:45,673 | INFO     | chi2: 3.2564494795773777
[2025-02-24 15:12:58] 2025-02-24 20:12:45,673 | INFO     | current chi2=3.2564494795773777 (change=37.56142242529158 %)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,673 | INFO     | model: linear, x: [1740402523.0, 1740402584.0, 1740402645.0, 1740402706.0, 1740402767.0, 1740402828.0, 1740402889.0, 1740402950.0, 1740403011.0, 1740403072.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,673 | INFO     | sum of square deviations: 22484001301.875324
[2025-02-24 15:12:58] 2025-02-24 20:12:45,677 | INFO     | sum of deviations: 96536733703.82722
[2025-02-24 15:12:58] 2025-02-24 20:12:45,677 | INFO     | mean x: 1740415211.1966426
[2025-02-24 15:12:58] 2025-02-24 20:12:45,677 | INFO     | mean y: 2533176.7338129496
[2025-02-24 15:12:58] 2025-02-24 20:12:45,678 | INFO     | -- intersect: -7470069120.41011
[2025-02-24 15:12:58] 2025-02-24 20:12:45,678 | INFO     | intersect: -7470069120.41011
[2025-02-24 15:12:58] 2025-02-24 20:12:45,678 | INFO     | chi2: 1.5402455530238583
[2025-02-24 15:12:58] 2025-02-24 20:12:45,679 | INFO     | current chi2=1.5402455530238583 (change=52.70169051651459 %)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,679 | INFO     | model: linear, x: [1740402828.0, 1740402889.0, 1740402950.0, 1740403011.0, 1740403072.0, 1740403133.0, 1740403194.0, 1740403255.0, 1740403316.0, 1740403378.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,679 | INFO     | sum of square deviations: 21684835726.679676
[2025-02-24 15:12:58] 2025-02-24 20:12:45,683 | INFO     | sum of deviations: 53047288208.1942
[2025-02-24 15:12:58] 2025-02-24 20:12:45,683 | INFO     | mean x: 1740415363.6990292
[2025-02-24 15:12:58] 2025-02-24 20:12:45,683 | INFO     | mean y: 2541466.735436893
[2025-02-24 15:12:58] 2025-02-24 20:12:45,683 | INFO     | -- intersect: -4255010518.6144648
[2025-02-24 15:12:58] 2025-02-24 20:12:45,684 | INFO     | intersect: -4255010518.6144648
[2025-02-24 15:12:58] 2025-02-24 20:12:45,684 | INFO     | chi2: 1.1967094957940767
[2025-02-24 15:12:58] 2025-02-24 20:12:45,684 | INFO     | current chi2=1.1967094957940767 (change=22.303979813825197 %)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,684 | INFO     | left removable region: 40
[2025-02-24 15:12:58] 2025-02-24 20:12:45,685 | INFO     | model: linear, x: [1740404049.0, 1740404109.0, 1740404170.0, 1740404231.0, 1740404292.0, 1740404353.0, 1740404414.0, 1740404476.0, 1740404536.0, 1740404598.0, 1740
[2025-02-24 15:12:58] 2025-02-24 20:12:45,685 | INFO     | sum of square deviations: 17832993986.73835
[2025-02-24 15:12:58] 2025-02-24 20:12:45,688 | INFO     | sum of deviations: 9171268799.86529
[2025-02-24 15:12:58] 2025-02-24 20:12:45,688 | INFO     | mean x: 1740415790.7020726
[2025-02-24 15:12:58] 2025-02-24 20:12:45,689 | INFO     | mean y: 2562050.6683937823
[2025-02-24 15:12:58] 2025-02-24 20:12:45,689 | INFO     | -- intersect: -892510366.8925012
[2025-02-24 15:12:58] 2025-02-24 20:12:45,689 | INFO     | intersect: -892510366.8925012
[2025-02-24 15:12:58] 2025-02-24 20:12:45,689 | INFO     | chi2: 0.009900138191401833
[2025-02-24 15:12:58] 2025-02-24 20:12:45,689 | INFO     | -- intersect: -892510366.8925012
[2025-02-24 15:12:58] 2025-02-24 20:12:45,690 | INFO     | current memory leak: 0.51 B/s (using 386 data points, chi2=0.01)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,690 | INFO     | ..............................
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . Timing measurements:
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . get job = 0 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . initial setup = 5 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . payload setup = 47 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . stage-in = 0 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . payload execution = 26402 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . stage-out = 2 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | . log creation = 0 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,691 | INFO     | ..............................
[2025-02-24 15:12:58] 2025-02-24 20:12:45,794 | INFO     | 
[2025-02-24 15:12:58] 2025-02-24 20:12:45,794 | INFO     | job summary report
[2025-02-24 15:12:58] 2025-02-24 20:12:45,794 | INFO     | --------------------------------------------------
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | PanDA job id: 6527883902
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | task id: 43078919
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | errors: (none)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | pilot state: finished 
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | transexitcode: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | exeerrorcode: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | exeerrordiag: 
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | exitcode: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | exitmsg: OK
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | cpuconsumptiontime: 95669 s
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | nevents: 400
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | neventsw: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | pid: 73446
[2025-02-24 15:12:58] 2025-02-24 20:12:45,795 | INFO     | pgrp: 73446
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | corecount: 8
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | event service: False
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | sizes: {0: 2383086, 1: 2383170, 2: 2383369, 13: 2383369, 24: 2383425, 33: 2383659, 35: 2383843, 26453: 2419876, 26456: 2428817, 26457: 2428873, 26470: 2429043}
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | --------------------------------------------------
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | 
[2025-02-24 15:12:58] 2025-02-24 20:12:45,796 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-02-24 15:12:58] 2025-02-24 20:12:45,825 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,826 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,827 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-24 15:12:58] 2025-02-24 20:12:45,828 | INFO     | job 6527883902 has completed (purged errors)
[2025-02-24 15:12:58] 2025-02-24 20:12:45,828 | INFO     | overall cleanup function is called
[2025-02-24 15:12:58] 2025-02-24 20:12:45,859 | INFO     | number of running child processes to parent process 73446: 1
[2025-02-24 15:12:58] 2025-02-24 20:12:45,859 | INFO     | maximum number of monitored processes: 8
[2025-02-24 15:12:58] 2025-02-24 20:12:45,859 | INFO     | aborting job monitoring since job object (job id=6527883902) has expired
[2025-02-24 15:12:58] 2025-02-24 20:12:46,836 | INFO     | --- collectZombieJob: --- 10, [73446]
[2025-02-24 15:12:58] 2025-02-24 20:12:46,837 | INFO     | zombie collector waiting for pid 73446
[2025-02-24 15:12:58] 2025-02-24 20:12:46,837 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-24 15:12:58] 2025-02-24 20:12:46,837 | INFO     | collected zombie processes
[2025-02-24 15:12:58] 2025-02-24 20:12:46,837 | INFO     | will attempt to kill all subprocesses of pid=73446
[2025-02-24 15:12:58] 2025-02-24 20:12:46,986 | INFO     | process IDs to be killed: [73446] (in reverse order)
[2025-02-24 15:12:58] 2025-02-24 20:12:47,093 | WARNING  | found no corresponding commands to process id(s)
[2025-02-24 15:12:58] 2025-02-24 20:12:47,093 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-24 15:12:58] 2025-02-24 20:12:47,104 | INFO     | did not find any defunct processes belonging to 73446
[2025-02-24 15:12:58] 2025-02-24 20:12:47,114 | INFO     | did not find any defunct processes belonging to 73446
[2025-02-24 15:12:58] 2025-02-24 20:12:47,114 | INFO     | ready for new job
[2025-02-24 15:12:58] 2025-02-24 20:12:47,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-24 15:12:58] 2025-02-24 20:12:47,117 | INFO     | **************************************
[2025-02-24 15:12:58] 2025-02-24 20:12:47,118 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-24 15:12:58] 2025-02-24 20:12:47,118 | INFO     | **************************************
[2025-02-24 15:12:58] 2025-02-24 20:12:47,118 | INFO     | 
[2025-02-24 15:12:58] 2025-02-24 20:12:47,122 | INFO     | architecture information:
[2025-02-24 15:12:58] 2025-02-24 20:12:47,123 | INFO     | executing command: cat /etc/os-release
[2025-02-24 15:12:58] 2025-02-24 20:12:47,156 | INFO     | cat /etc/os-release:
[2025-02-24 15:12:58] NAME="CentOS Linux"
[2025-02-24 15:12:58] VERSION="7 (Core)"
[2025-02-24 15:12:58] ID="centos"
[2025-02-24 15:12:58] ID_LIKE="rhel fedora"
[2025-02-24 15:12:58] VERSION_ID="7"
[2025-02-24 15:12:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-24 15:12:58] ANSI_COLOR="0;31"
[2025-02-24 15:12:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-24 15:12:58] HOME_URL="https://www.centos.org/"
[2025-02-24 15:12:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-24 15:12:58] 
[2025-02-24 15:12:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-24 15:12:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-24 15:12:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-24 15:12:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-24 15:12:58] 
[2025-02-24 15:12:58] 2025-02-24 20:12:47,156 | INFO     | **************************************
[2025-02-24 15:12:58] 2025-02-24 20:12:47,659 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-02-24 15:12:58] 2025-02-24 20:12:47,675 | INFO     | sufficient remaining disk space (101145640960 B)
[2025-02-24 15:12:58] 2025-02-24 20:12:47,676 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-24 15:12:58] 2025-02-24 20:12:47,676 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-24 15:12:58] 2025-02-24 20:12:47,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-24 15:12:58] 2025-02-24 20:12:47,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-24 15:12:58] 2025-02-24 20:12:47,676 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-24 15:12:58] 2025-02-24 20:12:47,677 | INFO     | aborting loop
[2025-02-24 15:12:58] 2025-02-24 20:12:47,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-24 15:12:58] 2025-02-24 20:12:47,710 | INFO     | found 0 job(s) in 20 queues
[2025-02-24 15:12:58] 2025-02-24 20:12:47,711 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-24 15:12:58] 2025-02-24 20:12:47,711 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-24 15:12:58] 2025-02-24 20:12:48,210 | INFO     | all data control threads have been joined
[2025-02-24 15:12:58] 2025-02-24 20:12:48,423 | INFO     | all payload control threads have been joined
[2025-02-24 15:12:58] 2025-02-24 20:12:48,681 | INFO     | [job] retrieve thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:48,682 | INFO     | [job] queue monitor thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:48,682 | INFO     | [job] job monitor thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:48,780 | INFO     | [payload] validate_post thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,070 | INFO     | [payload] execute_payloads thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,074 | INFO     | [payload] validate_pre thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,215 | INFO     | [data] control thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,343 | INFO     | all job control threads have been joined
[2025-02-24 15:12:58] 2025-02-24 20:12:49,382 | INFO     | [job] create_data_payload thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,428 | INFO     | [payload] control thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,549 | INFO     | [data] copytool_in thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,588 | INFO     | [payload] failed_post thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,633 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,682 | INFO     | [data] copytool_out thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:49,917 | INFO     | [job] validate thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:50,349 | INFO     | [job] control thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:51,685 | INFO     | [data] queue_monitor thread has finished
[2025-02-24 15:12:58] 2025-02-24 20:12:52,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140003979347776)>', '<ExcThread(monitor, started 140003669677824)>']
[2025-02-24 15:12:58] 2025-02-24 20:12:52,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-24 15:12:58] 2025-02-24 20:12:52,738 | INFO     | [monitor] control thread has ended
[2025-02-24 15:12:58] 2025-02-24 20:12:57,143 | INFO     | all workflow threads have been joined
[2025-02-24 15:12:58] 2025-02-24 20:12:57,143 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-24 15:12:58] 2025-02-24 20:12:57,144 | INFO     | traces error code: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:57,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-24 15:12:58] 2025-02-24 20:12:57,295 [wrapper] ==== pilot stdout END ====
[2025-02-24 15:12:58] 2025-02-24 20:12:57,297 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-24 15:12:58] 2025-02-24 20:12:57,299 [wrapper] pilotpid: 21674
[2025-02-24 15:12:58] 2025-02-24 20:12:57,300 [wrapper] Pilot exit status: 0
[2025-02-24 15:12:58] 2025-02-24 20:12:57,308 [wrapper] pandaids: 6527883902 6527883902
[2025-02-24 15:12:58] 2025-02-24 20:12:57,369 [wrapper] cleanup supervisor_pilot  22920 21675
[2025-02-24 15:12:58] 2025-02-24 20:12:57,419 [wrapper] Test setup, not cleaning
[2025-02-24 15:12:58] 2025-02-24 20:12:57,490 [wrapper] apfmon messages muted
[2025-02-24 15:12:58] 2025-02-24 20:12:57,530 [wrapper] ==== wrapper stdout END ====
[2025-02-24 15:12:58] 2025-02-24 20:12:57,584 [wrapper] ==== wrapper stderr END ====
[2025-02-24 15:12:58]  *** Error codes and diagnostics ***
[2025-02-24 15:12:58]     "exeErrorCode": 0,
[2025-02-24 15:12:58]     "exeErrorDiag": "",
[2025-02-24 15:12:58]     "pilotErrorCode": 0,
[2025-02-24 15:12:58]     "pilotErrorDiag": "",
[2025-02-24 15:12:58]  *** Listing of results directory ***
[2025-02-24 15:12:58] total 1001080
[2025-02-24 15:12:58] drwx------ 4 boincer umatlas      4096 Dec 18 06:03 pilot3
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas    491065 Feb 23 20:34 pilot3.tar.gz
[2025-02-24 15:12:58] -rwx------ 1 boincer umatlas     35865 Feb 23 20:50 runpilot2-wrapper.sh
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas      5118 Feb 23 20:50 queuedata.json
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas       100 Feb 24 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-24 15:12:58] -rwxr-xr-x 1 boincer umatlas      7986 Feb 24 01:56 run_atlas
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas       105 Feb 24 01:56 job.xml
[2025-02-24 15:12:58] -rw-r--r-- 3 boincer umatlas 343486492 Feb 24 01:56 EVNT.43078917._002575.pool.root.1
[2025-02-24 15:12:58] -rw-r--r-- 3 boincer umatlas 343486492 Feb 24 01:56 ATLAS.root_0
[2025-02-24 15:12:58] -rw-r--r-- 2 boincer umatlas     17569 Feb 24 01:56 start_atlas.sh
[2025-02-24 15:12:58] drwxrwx--x 2 boincer umatlas      4096 Feb 24 01:56 shared
[2025-02-24 15:12:58] -rw-r--r-- 2 boincer umatlas    503563 Feb 24 01:56 input.tar.gz
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas         0 Feb 24 01:56 boinc_lockfile
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas      2548 Feb 24 07:49 pandaJob.out
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas       424 Feb 24 07:49 setup.sh.local
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas    987749 Feb 24 07:50 agis_schedconf.cvmfs.json
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas 326368626 Feb 24 15:11 HITS.43078919._092259.pool.root.1
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas       533 Feb 24 15:11 boinc_task_state.xml
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas      6302 Feb 24 15:12 init_data.xml
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas        96 Feb 24 15:12 pilot_heartbeat.json
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas      1064 Feb 24 15:12 memory_monitor_summary.json
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas   1582569 Feb 24 15:12 agis_ddmendpoints.agis.ALL.json
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas    571394 Feb 24 15:12 log.43078919._092259.job.log.tgz.1
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas      7785 Feb 24 15:12 heartbeat.json
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas      8192 Feb 24 15:12 boinc_mmap_file
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas        29 Feb 24 15:12 wrapper_checkpoint.txt
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas      4216 Feb 24 15:12 pilotlog.txt
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas   3400773 Feb 24 15:12 log.43078919._092259.job.log.1
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas       357 Feb 24 15:12 output.list
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas       620 Feb 24 15:12 runtime_log
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas   3993600 Feb 24 15:12 result.tar.gz
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas     11109 Feb 24 15:12 runtime_log.err
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas       789 Feb 24 15:12 HmpMDm4mc66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmVtvKDmyibCOn.diag
[2025-02-24 15:12:58] -rw-r--r-- 1 boincer umatlas     23464 Feb 24 15:12 stderr.txt
[2025-02-24 15:12:58] HITS file was successfully produced:
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas 326368626 Feb 24 15:11 shared/HITS.pool.root.1
[2025-02-24 15:12:58]  *** Contents of shared directory: ***
[2025-02-24 15:12:58] total 658580
[2025-02-24 15:12:58] -rw-r--r-- 3 boincer umatlas 343486492 Feb 24 01:56 ATLAS.root_0
[2025-02-24 15:12:58] -rw-r--r-- 2 boincer umatlas     17569 Feb 24 01:56 start_atlas.sh
[2025-02-24 15:12:58] -rw-r--r-- 2 boincer umatlas    503563 Feb 24 01:56 input.tar.gz
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas 326368626 Feb 24 15:11 HITS.pool.root.1
[2025-02-24 15:12:58] -rw------- 1 boincer umatlas   3993600 Feb 24 15:12 result.tar.gz
15:12:59 (322500): run_atlas exited; CPU time 95580.603473
15:12:59 (322500): called boinc_finish(0)

</stderr_txt>
]]>

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