Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 08:16:23 (17636): Detected: vboxwrapper 26206
2025-02-24 08:16:23 (17636): Detected: BOINC client v8.0.2
2025-02-24 08:16:23 (17636): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-02-24 08:16:23 (17636): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 08:16:24 (17636): Create VM. (boinc_c93e670e26aed1cd, slot#8)
2025-02-24 08:16:24 (17636): Setting Memory Size for VM. (4300MB)
2025-02-24 08:16:25 (17636): Setting CPU Count for VM. (3)
2025-02-24 08:16:25 (17636): Setting Chipset Options for VM.
2025-02-24 08:16:25 (17636): Setting Graphics Controller Options for VM.
2025-02-24 08:16:25 (17636): Setting Boot Options for VM.
2025-02-24 08:16:26 (17636): Setting Network Configuration for NAT.
2025-02-24 08:16:26 (17636): Enabling VM Network Access.
2025-02-24 08:16:26 (17636): Disabling USB Support for VM.
2025-02-24 08:16:26 (17636): Disabling COM Port Support for VM.
2025-02-24 08:16:27 (17636): Disabling LPT Port Support for VM.
2025-02-24 08:16:27 (17636): Disabling Audio Support for VM.
2025-02-24 08:16:27 (17636): Disabling Clipboard Support for VM.
2025-02-24 08:16:27 (17636): Disabling Drag and Drop Support for VM.
2025-02-24 08:16:28 (17636): Adding storage controller(s) to VM.
2025-02-24 08:16:28 (17636): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 08:16:29 (17636): Adding VirtualBox Guest Additions to VM.
2025-02-24 08:16:29 (17636): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 08:16:29 (17636): forwarding host port 60779 to guest port 80
2025-02-24 08:16:29 (17636): Enabling remote desktop for VM.
2025-02-24 08:16:30 (17636): Enabling shared directory for VM.
2025-02-24 08:16:31 (17636): Starting VM using VBoxManage interface. (boinc_c93e670e26aed1cd, slot#8)
2025-02-24 08:16:35 (17636): Successfully started VM. (PID = '10196')
2025-02-24 08:16:35 (17636): Reporting VM Process ID to BOINC.
2025-02-24 08:16:35 (17636): Guest Log: BIOS: VirtualBox 7.0.22
2025-02-24 08:16:35 (17636): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 08:16:35 (17636): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 08:16:35 (17636): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 08:16:35 (17636): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 08:16:35 (17636): Detected: Web Application Enabled (http://localhost:60779)
2025-02-24 08:16:35 (17636): Detected: Remote Desktop Enabled (localhost:60780)
2025-02-24 08:16:35 (17636): Preference change detected
2025-02-24 08:16:35 (17636): Setting CPU throttle for VM. (60%)
2025-02-24 08:16:36 (17636): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 08:16:37 (17636): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 08:16:37 (17636): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 08:16:40 (17636): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 08:16:40 (17636): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 08:16:40 (17636): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 08:16:46 (17636): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 08:16:46 (17636): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 08:16:51 (17636): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000088 main     Log opened 2025-02-24T08:16:49.672196000Z
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000172 main     OS Product: Linux
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000190 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000201 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000212 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000212 main     Process ID: 1283
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000213 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 08:16:51 (17636): Guest Log: 00:00:00.000623 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 08:16:51 (17636): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 08:16:51 (17636): Guest Log: [INFO] Mounting shared directory
2025-02-24 08:16:51 (17636): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 08:16:56 (17636): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 08:16:56 (17636): Guest Log: [INFO] Detected branch: prod
2025-02-24 08:16:56 (17636): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 08:16:56 (17636): Guest Log: Copying input files
2025-02-24 08:16:57 (17636): Guest Log: Copied input files into RunAtlas.
2025-02-24 08:16:57 (17636): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 08:16:57 (17636): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 08:16:57 (17636): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 08:16:57 (17636): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 08:17:01 (17636): Guest Log: 00:00:10.001430 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 485 112 000ns (GuestNow=1 740 381 421 188 201 000 ns GuestLast=1 740 385 009 673 313 000 ns fSetTimeLastLoop=true )
2025-02-24 08:17:07 (17636): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 08:17:07 (17636): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 08:17:07 (17636): Guest Log: 2.6.3.0 1559 0 32184 143003 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 08:17:08 (17636): Guest Log: copied the webapp to /var/www
2025-02-24 08:17:08 (17636): Guest Log: ATHENA_PROC_NUMBER=3
2025-02-24 08:17:08 (17636): Guest Log: ATHENA_CORE_NUMBER=3
2025-02-24 08:17:08 (17636): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 08:17:08 (17636): Guest Log:  *** Starting ATLAS job. (PandaID=6528088180 taskID=43205094) ***
2025-02-24 09:56:38 (17636): Status Report: Elapsed Time: '6000.000000'
2025-02-24 09:56:38 (17636): Status Report: CPU Time: '9003.093750'
2025-02-24 11:36:41 (17636): Status Report: Elapsed Time: '12000.000000'
2025-02-24 11:36:41 (17636): Status Report: CPU Time: '19857.500000'
2025-02-24 12:44:20 (17636): Preference change detected
2025-02-24 12:44:20 (17636): Setting CPU throttle for VM. (90%)
2025-02-24 12:44:21 (17636): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 13:16:44 (17636): Status Report: Elapsed Time: '18000.000000'
2025-02-24 13:16:44 (17636): Status Report: CPU Time: '32442.562500'
2025-02-24 14:56:48 (17636): Status Report: Elapsed Time: '24000.000000'
2025-02-24 14:56:48 (17636): Status Report: CPU Time: '48642.046875'
2025-02-24 15:40:29 (17636): Guest Log:  *** Job finished ***
2025-02-24 15:40:29 (17636): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:29,492 | INFO     | [data] queue_monitor thread has finished
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:35,781 | INFO     | job.realtimelogging is not enabled
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:36,794 | INFO     | [payload] run_realtimelog thread has finished
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:38,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514019313472)>', '<ExcThread(monitor, started 140513118242560)>']
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:39,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:39,542 | INFO     | [monitor] control thread has ended
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,843 | INFO     | all workflow threads have been joined
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,843 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,843 | INFO     | traces error code: 0
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,966 [wrapper] ==== pilot stdout END ====
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,970 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,975 [wrapper] pilotpid: 5884
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:43,979 [wrapper] Pilot exit status: 0
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,703 [wrapper] pandaids: 6528088180
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,723 [wrapper] cleanup supervisor_pilot  1608 5885
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,727 [wrapper] Test setup, not cleaning
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,734 [wrapper] apfmon messages muted
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,737 [wrapper] ==== wrapper stdout END ====
2025-02-24 15:40:29 (17636): Guest Log: 2025-02-24 14:40:46,740 [wrapper] ==== wrapper stderr END ====
2025-02-24 15:40:29 (17636): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 15:40:29 (17636): Guest Log:     "exeErrorCode": 0,
2025-02-24 15:40:29 (17636): Guest Log:     "exeErrorDiag": "",
2025-02-24 15:40:29 (17636): Guest Log:     "pilotErrorCode": 0,
2025-02-24 15:40:29 (17636): Guest Log:     "pilotErrorDiag": "",
2025-02-24 15:40:29 (17636): Guest Log:  *** Listing of results directory ***
2025-02-24 15:40:29 (17636): Guest Log: total 327188
2025-02-24 15:40:29 (17636): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 24 05:18 pilot3.tar.gz
2025-02-24 15:40:29 (17636): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 24 05:25 runpilot2-wrapper.sh
2025-02-24 15:40:29 (17636): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 24 05:25 queuedata.json
2025-02-24 15:40:29 (17636): Guest Log: -rwxr-xr-x. 1 atlas atlas      9068 Feb 24 07:16 init_data.xml
2025-02-24 15:40:29 (17636): Guest Log: -rwxr-xr-x. 1 atlas atlas    503553 Feb 24 07:16 input.tar.gz
2025-02-24 15:40:29 (17636): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 07:16 start_atlas.sh
2025-02-24 15:40:29 (17636): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 07:16 EVNT.43092757._002022.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 15:40:29 (17636): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Feb 24 07:17 pandaJob.out
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 07:17 setup.sh.local
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas    987720 Feb 24 07:18 agis_schedconf.cvmfs.json
2025-02-24 15:40:29 (17636): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 07:19 pilot3
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas 325048812 Feb 24 14:38 HITS.43205094._040237.pool.root.1
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas      1024 Feb 24 14:39 memory_monitor_summary.json
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 14:39 agis_ddmendpoints.agis.ALL.json
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas    427417 Feb 24 14:39 log.43205094._040237.job.log.tgz.1
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 14:40 pilot_heartbeat.json
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas      7708 Feb 24 14:40 heartbeat.json
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas      4470 Feb 24 14:40 pilotlog.txt
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas   2698723 Feb 24 14:40 log.43205094._040237.job.log.1
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 14:40 output.list
2025-02-24 15:40:29 (17636): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 14:40 runtime_log
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas   3143680 Feb 24 14:40 result.tar.gz
2025-02-24 15:40:29 (17636): Guest Log: -rw-r--r--. 1 atlas atlas     10912 Feb 24 14:40 runtime_log.err
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas       649 Feb 24 14:40 jXBMDmT9f66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmlvvKDmkbXW7m.diag
2025-02-24 15:40:29 (17636): Guest Log: Looking for outputfile HITS.43205094._040237.pool.root.1
2025-02-24 15:40:29 (17636): Guest Log: HITS file was successfully produced
2025-02-24 15:40:29 (17636): Guest Log: -rw-------. 1 atlas atlas 325048812 Feb 24 14:38 /home/atlas/RunAtlas/HITS.43205094._040237.pool.root.1
2025-02-24 15:40:31 (17636): Guest Log: Successfully finished the ATLAS job!
2025-02-24 15:40:31 (17636): Guest Log: Copying the results back to the shared directory!
2025-02-24 15:40:31 (17636): Guest Log:  *** Contents of shared directory: ***
2025-02-24 15:40:31 (17636): Guest Log: total 653728
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root 340684780 Feb 24 07:16 ATLAS.root_0
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root 325048812 Feb 24 14:40 HITS.pool.root.1
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root      9068 Feb 24 07:16 init_data.xml
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root    503553 Feb 24 05:43 input.tar.gz
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root   3143680 Feb 24 14:40 result.tar.gz
2025-02-24 15:40:31 (17636): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 05:43 start_atlas.sh
2025-02-24 15:40:31 (17636): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 15:40:31 (17636): VM Completion File Detected.
2025-02-24 15:40:31 (17636): Powering off VM.
2025-02-24 15:40:32 (17636): Successfully stopped VM.
2025-02-24 15:40:32 (17636): Deregistering VM. (boinc_c93e670e26aed1cd, slot#8)
2025-02-24 15:40:32 (17636): Removing network bandwidth throttle group from VM.
2025-02-24 15:40:32 (17636): Removing VM from VirtualBox.
15:40:37 (17636): called boinc_finish(0)

</stderr_txt>
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