Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 18:59:27 (4224): Detected: vboxwrapper 26206
2025-02-24 18:59:27 (4224): Detected: BOINC client v8.0.2
2025-02-24 18:59:28 (4224): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-24 18:59:28 (4224): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 18:59:28 (4224): Create VM. (boinc_22883badea1544f3, slot#1)
2025-02-24 18:59:29 (4224): Setting Memory Size for VM. (5400MB)
2025-02-24 18:59:29 (4224): Setting CPU Count for VM. (2)
2025-02-24 18:59:29 (4224): Setting Chipset Options for VM.
2025-02-24 18:59:30 (4224): Setting Graphics Controller Options for VM.
2025-02-24 18:59:30 (4224): Setting Boot Options for VM.
2025-02-24 18:59:30 (4224): Setting Network Configuration for NAT.
2025-02-24 18:59:30 (4224): Enabling VM Network Access.
2025-02-24 18:59:31 (4224): Disabling USB Support for VM.
2025-02-24 18:59:31 (4224): Disabling COM Port Support for VM.
2025-02-24 18:59:31 (4224): Disabling LPT Port Support for VM.
2025-02-24 18:59:31 (4224): Disabling Audio Support for VM.
2025-02-24 18:59:32 (4224): Disabling Clipboard Support for VM.
2025-02-24 18:59:32 (4224): Disabling Drag and Drop Support for VM.
2025-02-24 18:59:32 (4224): Adding storage controller(s) to VM.
2025-02-24 18:59:32 (4224): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 18:59:33 (4224): Adding VirtualBox Guest Additions to VM.
2025-02-24 18:59:33 (4224): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 18:59:34 (4224): forwarding host port 54726 to guest port 80
2025-02-24 18:59:34 (4224): Enabling remote desktop for VM.
2025-02-24 18:59:34 (4224): Enabling shared directory for VM.
2025-02-24 18:59:35 (4224): Starting VM using VBoxManage interface. (boinc_22883badea1544f3, slot#1)
2025-02-24 18:59:41 (4224): Successfully started VM. (PID = '6380')
2025-02-24 18:59:41 (4224): Reporting VM Process ID to BOINC.
2025-02-24 18:59:41 (4224): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-24 18:59:41 (4224): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 18:59:41 (4224): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 18:59:41 (4224): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 18:59:41 (4224): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 18:59:41 (4224): Detected: Web Application Enabled (http://localhost:54726)
2025-02-24 18:59:41 (4224): Detected: Remote Desktop Enabled (localhost:54727)
2025-02-24 18:59:41 (4224): Preference change detected
2025-02-24 18:59:41 (4224): Setting CPU throttle for VM. (100%)
2025-02-24 18:59:41 (4224): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 18:59:43 (4224): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 18:59:43 (4224): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 18:59:45 (4224): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 18:59:45 (4224): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 18:59:45 (4224): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 18:59:51 (4224): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 18:59:51 (4224): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 18:59:57 (4224): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000145 main     Log opened 2025-02-24T18:59:55.065116000Z
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000239 main     OS Product: Linux
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000258 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000274 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000289 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000290 main     Process ID: 1302
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000290 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 18:59:57 (4224): Guest Log: 00:00:00.000852 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 18:59:57 (4224): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 18:59:57 (4224): Guest Log: [INFO] Mounting shared directory
2025-02-24 18:59:57 (4224): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 18:59:59 (4224): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 18:59:59 (4224): Guest Log: [INFO] Detected branch: prod
2025-02-24 18:59:59 (4224): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 18:59:59 (4224): Guest Log: Copying input files
2025-02-24 19:00:01 (4224): Guest Log: Copied input files into RunAtlas.
2025-02-24 19:00:01 (4224): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-02-24 19:00:07 (4224): Guest Log: 00:00:10.003412 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 720 935 000ns (GuestNow=1 740 420 006 346 186 000 ns GuestLast=1 740 423 595 067 121 000 ns fSetTimeLastLoop=true )
2025-02-24 19:00:07 (4224): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 19:00:08 (4224): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 19:00:08 (4224): Guest Log: 2.6.3.0 1575 0 31624 143011 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-02-24 19:00:08 (4224): Guest Log: copied the webapp to /var/www
2025-02-24 19:00:08 (4224): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-24 19:00:08 (4224): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-24 19:00:08 (4224): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 19:00:08 (4224): Guest Log:  *** Starting ATLAS job. (PandaID=6522333368 taskID=43205094) ***
2025-02-24 20:39:44 (4224): Status Report: Elapsed Time: '6000.000000'
2025-02-24 20:39:44 (4224): Status Report: CPU Time: '11121.312500'
2025-02-24 22:19:48 (4224): Status Report: Elapsed Time: '12000.000000'
2025-02-24 22:19:48 (4224): Status Report: CPU Time: '23071.687500'
2025-02-24 23:59:51 (4224): Status Report: Elapsed Time: '18000.000000'
2025-02-24 23:59:51 (4224): Status Report: CPU Time: '35022.125000'
2025-02-25 01:39:55 (4224): Status Report: Elapsed Time: '24000.000000'
2025-02-25 01:39:55 (4224): Status Report: CPU Time: '46974.906250'
2025-02-25 03:19:59 (4224): Status Report: Elapsed Time: '30000.000000'
2025-02-25 03:19:59 (4224): Status Report: CPU Time: '58924.140625'
2025-02-25 05:00:10 (4224): Status Report: Elapsed Time: '36000.000000'
2025-02-25 05:00:10 (4224): Status Report: CPU Time: '70889.062500'
2025-02-25 05:49:21 (4224): Guest Log:  *** Job finished ***
2025-02-25 05:49:21 (4224): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:48:52,765 | INFO     | [data] queue_monitor thread has finished
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:48:57,813 | INFO     | job.realtimelogging is not enabled
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:48:58,814 | INFO     | [payload] run_realtimelog thread has finished
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:48:59,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139713759778624)>', '<ExcThread(monitor, started 139713289623296)>']
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:00,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:00,068 | INFO     | [monitor] control thread has ended
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:04,964 | INFO     | all workflow threads have been joined
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:04,964 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:04,964 | INFO     | traces error code: 0
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:04,964 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,075 [wrapper] ==== pilot stdout END ====
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,079 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,083 [wrapper] pilotpid: 5874
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,088 [wrapper] Pilot exit status: 0
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,227 [wrapper] pandaids: 6522333368
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,256 [wrapper] cleanup supervisor_pilot 26987 5875
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,260 [wrapper] Test setup, not cleaning
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,269 [wrapper] apfmon messages muted
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,274 [wrapper] ==== wrapper stdout END ====
2025-02-25 05:49:21 (4224): Guest Log: 2025-02-25 04:49:05,278 [wrapper] ==== wrapper stderr END ====
2025-02-25 05:49:21 (4224): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 05:49:21 (4224): Guest Log:     "exeErrorCode": 0,
2025-02-25 05:49:21 (4224): Guest Log:     "exeErrorDiag": "",
2025-02-25 05:49:21 (4224): Guest Log:     "pilotErrorCode": 0,
2025-02-25 05:49:21 (4224): Guest Log:     "pilotErrorDiag": "",
2025-02-25 05:49:21 (4224): Guest Log:  *** Listing of results directory ***
2025-02-25 05:49:21 (4224): Guest Log: total 333832
2025-02-25 05:49:21 (4224): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 21 14:27 pilot3.tar.gz
2025-02-25 05:49:21 (4224): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 21 14:29 queuedata.json
2025-02-25 05:49:21 (4224): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 21 14:30 runpilot2-wrapper.sh
2025-02-25 05:49:21 (4224): Guest Log: -rwxr-xr-x. 1 atlas atlas      9108 Feb 24 18:00 init_data.xml
2025-02-25 05:49:21 (4224): Guest Log: -rwxr-xr-x. 1 atlas atlas    503561 Feb 24 18:00 input.tar.gz
2025-02-25 05:49:21 (4224): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 18:00 start_atlas.sh
2025-02-25 05:49:21 (4224): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 18:00 EVNT.43092757._001670.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 05:49:21 (4224): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 24 18:00 pandaJob.out
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas       459 Feb 24 18:00 setup.sh.local
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas    987749 Feb 24 18:01 agis_schedconf.cvmfs.json
2025-02-25 05:49:21 (4224): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 18:01 pilot3
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas        95 Feb 25 04:47 pilot_heartbeat.json
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas 327389395 Feb 25 04:48 HITS.43205094._032642.pool.root.1
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas      1024 Feb 25 04:48 memory_monitor_summary.json
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 25 04:48 agis_ddmendpoints.agis.ALL.json
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas    592250 Feb 25 04:48 log.43205094._032642.job.log.tgz.1
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas      7730 Feb 25 04:48 heartbeat.json
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas      4347 Feb 25 04:49 pilotlog.txt
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas   4760783 Feb 25 04:49 log.43205094._032642.job.log.1
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas       357 Feb 25 04:49 output.list
2025-02-25 05:49:21 (4224): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 25 04:49 runtime_log
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas   5376000 Feb 25 04:49 result.tar.gz
2025-02-25 05:49:21 (4224): Guest Log: -rw-r--r--. 1 atlas atlas     11323 Feb 25 04:49 runtime_log.err
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas       667 Feb 25 04:49 nMtNDmXEj56n9Rq4apOajLDm4fhM0noT9bVoFjIUDm0TdKDm8WQISo.diag
2025-02-25 05:49:21 (4224): Guest Log: Looking for outputfile HITS.43205094._032642.pool.root.1
2025-02-25 05:49:21 (4224): Guest Log: HITS file was successfully produced
2025-02-25 05:49:21 (4224): Guest Log: -rw-------. 1 atlas atlas 327389395 Feb 25 04:48 /home/atlas/RunAtlas/HITS.43205094._032642.pool.root.1
2025-02-25 05:49:22 (4224): Guest Log: Successfully finished the ATLAS job!
2025-02-25 05:49:22 (4224): Guest Log: Copying the results back to the shared directory!
2025-02-25 05:49:22 (4224): Guest Log:  *** Contents of shared directory: ***
2025-02-25 05:49:22 (4224): Guest Log: total 660392
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root 342931098 Feb 24 17:59 ATLAS.root_0
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root 327389395 Feb 25  2025 HITS.pool.root.1
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root      9108 Feb 24 17:59 init_data.xml
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root    503561 Feb 24 05:27 input.tar.gz
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root   5376000 Feb 25  2025 result.tar.gz
2025-02-25 05:49:22 (4224): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 05:27 start_atlas.sh
2025-02-25 05:49:22 (4224): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 05:49:22 (4224): VM Completion File Detected.
2025-02-25 05:49:22 (4224): Powering off VM.
2025-02-25 05:49:23 (4224): Successfully stopped VM.
2025-02-25 05:49:23 (4224): Deregistering VM. (boinc_22883badea1544f3, slot#1)
2025-02-25 05:49:23 (4224): Removing network bandwidth throttle group from VM.
2025-02-25 05:49:23 (4224): Removing VM from VirtualBox.
05:49:29 (4224): called boinc_finish(0)

</stderr_txt>
]]>

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