Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 06:21:57 (2872): Detected: vboxwrapper 26206
2025-02-24 06:21:57 (2872): Detected: BOINC client v8.0.2
2025-02-24 06:21:58 (2872): Detected: VirtualBox VboxManage Interface (Version: 7.0.22)
2025-02-24 06:21:58 (2872): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 06:21:58 (2872): Create VM. (boinc_68123ac357d00e08, slot#9)
2025-02-24 06:21:59 (2872): Setting Memory Size for VM. (4300MB)
2025-02-24 06:21:59 (2872): Setting CPU Count for VM. (3)
2025-02-24 06:21:59 (2872): Setting Chipset Options for VM.
2025-02-24 06:22:00 (2872): Setting Graphics Controller Options for VM.
2025-02-24 06:22:00 (2872): Setting Boot Options for VM.
2025-02-24 06:22:00 (2872): Setting Network Configuration for NAT.
2025-02-24 06:22:00 (2872): Enabling VM Network Access.
2025-02-24 06:22:01 (2872): Disabling USB Support for VM.
2025-02-24 06:22:01 (2872): Disabling COM Port Support for VM.
2025-02-24 06:22:01 (2872): Disabling LPT Port Support for VM.
2025-02-24 06:22:01 (2872): Disabling Audio Support for VM.
2025-02-24 06:22:02 (2872): Disabling Clipboard Support for VM.
2025-02-24 06:22:02 (2872): Disabling Drag and Drop Support for VM.
2025-02-24 06:22:02 (2872): Adding storage controller(s) to VM.
2025-02-24 06:22:02 (2872): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 06:22:03 (2872): Adding VirtualBox Guest Additions to VM.
2025-02-24 06:22:03 (2872): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 06:22:03 (2872): forwarding host port 59735 to guest port 80
2025-02-24 06:22:04 (2872): Enabling remote desktop for VM.
2025-02-24 06:22:04 (2872): Enabling shared directory for VM.
2025-02-24 06:22:05 (2872): Starting VM using VBoxManage interface. (boinc_68123ac357d00e08, slot#9)
2025-02-24 06:22:10 (2872): Successfully started VM. (PID = '7808')
2025-02-24 06:22:10 (2872): Reporting VM Process ID to BOINC.
2025-02-24 06:22:10 (2872): Guest Log: BIOS: VirtualBox 7.0.22
2025-02-24 06:22:10 (2872): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 06:22:10 (2872): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 06:22:10 (2872): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 06:22:10 (2872): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 06:22:10 (2872): Detected: Web Application Enabled (http://localhost:59735)
2025-02-24 06:22:10 (2872): Detected: Remote Desktop Enabled (localhost:59736)
2025-02-24 06:22:10 (2872): Preference change detected
2025-02-24 06:22:10 (2872): Setting CPU throttle for VM. (60%)
2025-02-24 06:22:10 (2872): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 06:22:12 (2872): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 06:22:12 (2872): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 06:22:15 (2872): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 06:22:15 (2872): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 06:22:15 (2872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 06:22:21 (2872): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 06:22:21 (2872): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 06:22:26 (2872): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000114 main     Log opened 2025-02-24T06:22:24.732227000Z
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000234 main     OS Product: Linux
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000259 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000274 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000288 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000289 main     Process ID: 1281
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000289 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 06:22:26 (2872): Guest Log: 00:00:00.000934 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 06:22:26 (2872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 06:22:26 (2872): Guest Log: [INFO] Mounting shared directory
2025-02-24 06:22:26 (2872): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 06:22:33 (2872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 06:22:33 (2872): Guest Log: [INFO] Detected branch: prod
2025-02-24 06:22:33 (2872): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 06:22:33 (2872): Guest Log: Copying input files
2025-02-24 06:22:34 (2872): Guest Log: Copied input files into RunAtlas.
2025-02-24 06:22:35 (2872): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 06:22:35 (2872): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 06:22:35 (2872): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 06:22:35 (2872): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 06:22:36 (2872): Guest Log: 00:00:10.002797 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 589 040 351 000ns (GuestNow=1 740 374 555 693 760 000 ns GuestLast=1 740 378 144 734 111 000 ns fSetTimeLastLoop=true )
2025-02-24 06:22:47 (2872): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 06:22:47 (2872): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 06:22:47 (2872): Guest Log: 2.6.3.0 1558 0 30332 143000 4 1 3119916 4096000 0 65024 0 0 n/a 1169 293 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 06:22:47 (2872): Guest Log: copied the webapp to /var/www
2025-02-24 06:22:47 (2872): Guest Log: ATHENA_PROC_NUMBER=3
2025-02-24 06:22:47 (2872): Guest Log: ATHENA_CORE_NUMBER=3
2025-02-24 06:22:48 (2872): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 06:22:48 (2872): Guest Log:  *** Starting ATLAS job. (PandaID=6526759551 taskID=43078919) ***
2025-02-24 08:02:13 (2872): Status Report: Elapsed Time: '6000.000000'
2025-02-24 08:02:13 (2872): Status Report: CPU Time: '8896.343750'
2025-02-24 09:42:16 (2872): Status Report: Elapsed Time: '12000.000000'
2025-02-24 09:42:16 (2872): Status Report: CPU Time: '19744.218750'
2025-02-24 11:22:19 (2872): Status Report: Elapsed Time: '18000.000000'
2025-02-24 11:22:19 (2872): Status Report: CPU Time: '30593.750000'
2025-02-24 12:44:20 (2872): Preference change detected
2025-02-24 12:44:20 (2872): Setting CPU throttle for VM. (90%)
2025-02-24 12:44:21 (2872): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 13:02:22 (2872): Status Report: Elapsed Time: '24000.000000'
2025-02-24 13:02:22 (2872): Status Report: CPU Time: '42407.562500'
2025-02-24 14:35:13 (2872): Guest Log:  *** Job finished ***
2025-02-24 14:35:13 (2872): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:24,674 | INFO     | [payload] run_realtimelog thread has finished
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:24,675 | INFO     | [data] copytool_in thread has finished
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:26,144 | INFO     | [data] queue_monitor thread has finished
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:27,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140489816921920)>', '<ExcThread(monitor, started 140489110054656)>']
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:27,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:27,537 | INFO     | [monitor] control thread has ended
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,066 | INFO     | all workflow threads have been joined
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,067 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,067 | INFO     | traces error code: 0
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,067 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,163 [wrapper] ==== pilot stdout END ====
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,172 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,175 [wrapper] pilotpid: 5868
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,177 [wrapper] Pilot exit status: 0
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,946 [wrapper] pandaids: 6526759551
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,965 [wrapper] cleanup supervisor_pilot  4912 5869
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,969 [wrapper] Test setup, not cleaning
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,975 [wrapper] apfmon messages muted
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,977 [wrapper] ==== wrapper stdout END ====
2025-02-24 14:35:13 (2872): Guest Log: 2025-02-24 13:35:32,980 [wrapper] ==== wrapper stderr END ====
2025-02-24 14:35:13 (2872): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 14:35:13 (2872): Guest Log:     "exeErrorCode": 0,
2025-02-24 14:35:13 (2872): Guest Log:     "exeErrorDiag": "",
2025-02-24 14:35:13 (2872): Guest Log:     "pilotErrorCode": 0,
2025-02-24 14:35:13 (2872): Guest Log:     "pilotErrorDiag": "",
2025-02-24 14:35:13 (2872): Guest Log:  *** Listing of results directory ***
2025-02-24 14:35:13 (2872): Guest Log: total 331368
2025-02-24 14:35:13 (2872): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 23 16:37 pilot3.tar.gz
2025-02-24 14:35:13 (2872): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 23 16:41 runpilot2-wrapper.sh
2025-02-24 14:35:13 (2872): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 23 16:41 queuedata.json
2025-02-24 14:35:13 (2872): Guest Log: -rwxr-xr-x. 1 atlas atlas      9068 Feb 24 05:22 init_data.xml
2025-02-24 14:35:13 (2872): Guest Log: -rwxr-xr-x. 1 atlas atlas    503556 Feb 24 05:22 input.tar.gz
2025-02-24 14:35:13 (2872): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 05:22 start_atlas.sh
2025-02-24 14:35:13 (2872): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 05:22 EVNT.43078917._002112.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 14:35:13 (2872): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Feb 24 05:22 pandaJob.out
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 05:22 setup.sh.local
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas    987712 Feb 24 05:24 agis_schedconf.cvmfs.json
2025-02-24 14:35:13 (2872): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 05:25 pilot3
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 13:34 pilot_heartbeat.json
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas 328514646 Feb 24 13:34 HITS.43078919._091859.pool.root.1
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas      1026 Feb 24 13:35 memory_monitor_summary.json
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 13:35 agis_ddmendpoints.agis.ALL.json
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas    462659 Feb 24 13:35 log.43078919._091859.job.log.tgz.1
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas      7705 Feb 24 13:35 heartbeat.json
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 24 13:35 pilotlog.txt
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas   3068146 Feb 24 13:35 log.43078919._091859.job.log.1
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 13:35 output.list
2025-02-24 14:35:13 (2872): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 13:35 runtime_log
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas   3553280 Feb 24 13:35 result.tar.gz
2025-02-24 14:35:13 (2872): Guest Log: -rw-r--r--. 1 atlas atlas     10912 Feb 24 13:35 runtime_log.err
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas       649 Feb 24 13:35 3WGNDmjDU66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmL4eKDmmfokXm.diag
2025-02-24 14:35:13 (2872): Guest Log: Looking for outputfile HITS.43078919._091859.pool.root.1
2025-02-24 14:35:13 (2872): Guest Log: HITS file was successfully produced
2025-02-24 14:35:13 (2872): Guest Log: -rw-------. 1 atlas atlas 328514646 Feb 24 13:34 /home/atlas/RunAtlas/HITS.43078919._091859.pool.root.1
2025-02-24 14:35:15 (2872): Guest Log: Successfully finished the ATLAS job!
2025-02-24 14:35:15 (2872): Guest Log: Copying the results back to the shared directory!
2025-02-24 14:35:15 (2872): Guest Log:  *** Contents of shared directory: ***
2025-02-24 14:35:15 (2872): Guest Log: total 660660
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root 343904772 Feb 24 05:21 ATLAS.root_0
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root 328514646 Feb 24 13:35 HITS.pool.root.1
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root      9068 Feb 24 05:21 init_data.xml
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root    503556 Feb 24 04:36 input.tar.gz
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root   3553280 Feb 24 13:35 result.tar.gz
2025-02-24 14:35:15 (2872): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 04:37 start_atlas.sh
2025-02-24 14:35:15 (2872): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 14:35:15 (2872): VM Completion File Detected.
2025-02-24 14:35:15 (2872): Powering off VM.
2025-02-24 14:35:15 (2872): Successfully stopped VM.
2025-02-24 14:35:15 (2872): Deregistering VM. (boinc_68123ac357d00e08, slot#9)
2025-02-24 14:35:16 (2872): Removing network bandwidth throttle group from VM.
2025-02-24 14:35:16 (2872): Removing VM from VirtualBox.
14:35:21 (2872): called boinc_finish(0)

</stderr_txt>
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