Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 22:29:15 (10988): Detected: vboxwrapper 26206
2025-02-23 22:29:15 (10988): Detected: BOINC client v8.0.4
2025-02-23 22:29:16 (10988): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-23 22:29:16 (10988): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 22:29:16 (10988): Create VM. (boinc_5507efd3f9ced169, slot#2)
2025-02-23 22:29:17 (10988): Setting Memory Size for VM. (4400MB)
2025-02-23 22:29:17 (10988): Setting CPU Count for VM. (4)
2025-02-23 22:29:17 (10988): Setting Chipset Options for VM.
2025-02-23 22:29:18 (10988): Setting Graphics Controller Options for VM.
2025-02-23 22:29:18 (10988): Setting Boot Options for VM.
2025-02-23 22:29:18 (10988): Setting Network Configuration for NAT.
2025-02-23 22:29:18 (10988): Enabling VM Network Access.
2025-02-23 22:29:19 (10988): Disabling USB Support for VM.
2025-02-23 22:29:19 (10988): Disabling COM Port Support for VM.
2025-02-23 22:29:19 (10988): Disabling LPT Port Support for VM.
2025-02-23 22:29:20 (10988): Disabling Audio Support for VM.
2025-02-23 22:29:20 (10988): Disabling Clipboard Support for VM.
2025-02-23 22:29:20 (10988): Disabling Drag and Drop Support for VM.
2025-02-23 22:29:20 (10988): Adding storage controller(s) to VM.
2025-02-23 22:29:21 (10988): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 22:29:21 (10988): Adding VirtualBox Guest Additions to VM.
2025-02-23 22:29:21 (10988): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 22:29:22 (10988): forwarding host port 60613 to guest port 80
2025-02-23 22:29:22 (10988): Enabling remote desktop for VM.
2025-02-23 22:29:22 (10988): Required extension pack not installed, remote desktop not enabled.
2025-02-23 22:29:22 (10988): Enabling shared directory for VM.
2025-02-23 22:29:23 (10988): Starting VM using VBoxManage interface. (boinc_5507efd3f9ced169, slot#2)
2025-02-23 22:29:27 (10988): Successfully started VM. (PID = '5680')
2025-02-23 22:29:27 (10988): Reporting VM Process ID to BOINC.
2025-02-23 22:29:27 (10988): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-23 22:29:27 (10988): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 22:29:27 (10988): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 22:29:27 (10988): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 22:29:27 (10988): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 22:29:27 (10988): Detected: Web Application Enabled (http://localhost:60613)
2025-02-23 22:29:27 (10988): Preference change detected
2025-02-23 22:29:27 (10988): Setting CPU throttle for VM. (60%)
2025-02-23 22:29:28 (10988): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 22:29:30 (10988): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 22:29:30 (10988): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 22:29:33 (10988): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 22:29:33 (10988): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 22:29:33 (10988): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 22:29:45 (10988): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 22:29:45 (10988): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 22:29:58 (10988): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000159 main     Log opened 2025-02-23T22:29:56.259631000Z
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000281 main     OS Product: Linux
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000314 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000340 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000366 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000366 main     Process ID: 1302
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.000367 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 22:29:58 (10988): Guest Log: 00:00:00.004900 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 22:29:58 (10988): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 22:29:58 (10988): Guest Log: [INFO] Mounting shared directory
2025-02-23 22:29:58 (10988): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 22:30:01 (10988): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 22:30:01 (10988): Guest Log: [INFO] Detected branch: prod
2025-02-23 22:30:01 (10988): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 22:30:01 (10988): Guest Log: Copying input files
2025-02-23 22:30:03 (10988): Guest Log: Copied input files into RunAtlas.
2025-02-23 22:30:03 (10988): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 22:30:03 (10988): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 22:30:03 (10988): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 22:30:03 (10988): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 22:30:08 (10988): Guest Log: 00:00:10.011535 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 287 878 000ns (GuestNow=1 740 367 807 553 910 000 ns GuestLast=1 740 349 796 266 032 000 ns fSetTimeLastLoop=true )
2025-02-23 22:30:12 (10988): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 22:30:12 (10988): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 22:30:12 (10988): Guest Log: 2.6.3.0 1580 0 32040 142997 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 22:30:14 (10988): Guest Log: copied the webapp to /var/www
2025-02-23 22:30:14 (10988): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-23 22:30:14 (10988): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-23 22:30:14 (10988): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 22:30:14 (10988): Guest Log:  *** Starting ATLAS job. (PandaID=6527869020 taskID=43205094) ***
2025-02-24 00:09:32 (10988): Status Report: Elapsed Time: '6000.000000'
2025-02-24 00:09:32 (10988): Status Report: CPU Time: '9643.046875'
2025-02-24 01:49:37 (10988): Status Report: Elapsed Time: '12000.000000'
2025-02-24 01:49:37 (10988): Status Report: CPU Time: '21678.812500'
2025-02-24 03:29:42 (10988): Status Report: Elapsed Time: '18000.000000'
2025-02-24 03:29:42 (10988): Status Report: CPU Time: '33694.578125'
2025-02-24 05:09:46 (10988): Status Report: Elapsed Time: '24000.000000'
2025-02-24 05:09:46 (10988): Status Report: CPU Time: '46091.500000'
2025-02-24 06:49:51 (10988): Status Report: Elapsed Time: '30000.000000'
2025-02-24 06:49:51 (10988): Status Report: CPU Time: '58516.484375'
2025-02-24 08:29:56 (10988): Status Report: Elapsed Time: '36000.000000'
2025-02-24 08:29:56 (10988): Status Report: CPU Time: '70606.218750'
2025-02-24 09:06:51 (10988): Guest Log:  *** Job finished ***
2025-02-24 09:06:51 (10988): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:36,594 | INFO     | [data] copytool_out thread has finished
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:37,087 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:41,173 | INFO     | [data] queue_monitor thread has finished
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:41,753 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140010956715840)>', '<ExcThread(monitor, started 140010657392384)>']
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:42,580 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:42,581 | INFO     | [monitor] control thread has ended
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:46,769 | INFO     | all workflow threads have been joined
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:46,769 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:46,769 | INFO     | traces error code: 0
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:46,769 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,052 [wrapper] ==== pilot stdout END ====
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,070 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,088 [wrapper] pilotpid: 5913
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,164 [wrapper] Pilot exit status: 0
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,261 [wrapper] pandaids: 6527869020
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,436 [wrapper] cleanup supervisor_pilot 10097 5914
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,470 [wrapper] Test setup, not cleaning
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,575 [wrapper] apfmon messages muted
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,580 [wrapper] ==== wrapper stdout END ====
2025-02-24 09:06:51 (10988): Guest Log: 2025-02-24 14:06:47,642 [wrapper] ==== wrapper stderr END ====
2025-02-24 09:06:51 (10988): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 09:06:51 (10988): Guest Log:     "exeErrorCode": 0,
2025-02-24 09:06:51 (10988): Guest Log:     "exeErrorDiag": "",
2025-02-24 09:06:51 (10988): Guest Log:     "pilotErrorCode": 0,
2025-02-24 09:06:51 (10988): Guest Log:     "pilotErrorDiag": "",
2025-02-24 09:06:51 (10988): Guest Log:  *** Listing of results directory ***
2025-02-24 09:06:51 (10988): Guest Log: total 329876
2025-02-24 09:06:51 (10988): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 24 01:02 pilot3.tar.gz
2025-02-24 09:06:51 (10988): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 24 01:25 queuedata.json
2025-02-24 09:06:51 (10988): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 24 01:26 runpilot2-wrapper.sh
2025-02-24 09:06:51 (10988): Guest Log: -rwxr-xr-x. 1 atlas atlas     11033 Feb 24 03:30 init_data.xml
2025-02-24 09:06:51 (10988): Guest Log: -rwxr-xr-x. 1 atlas atlas    503558 Feb 24 03:30 input.tar.gz
2025-02-24 09:06:51 (10988): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 03:30 start_atlas.sh
2025-02-24 09:06:51 (10988): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 03:30 EVNT.43092757._001999.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 09:06:51 (10988): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Feb 24 03:30 pandaJob.out
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 03:30 setup.sh.local
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas    987712 Feb 24 03:31 agis_schedconf.cvmfs.json
2025-02-24 09:06:51 (10988): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 03:31 pilot3
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas 327293092 Feb 24 14:04 HITS.43205094._040154.pool.root.1
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 24 14:05 memory_monitor_summary.json
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 14:06 agis_ddmendpoints.agis.ALL.json
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas    493547 Feb 24 14:06 log.43205094._040154.job.log.tgz.1
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 14:06 pilot_heartbeat.json
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas      7739 Feb 24 14:06 heartbeat.json
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 24 14:06 pilotlog.txt
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas   2884724 Feb 24 14:06 log.43205094._040154.job.log.1
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 14:06 output.list
2025-02-24 09:06:51 (10988): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 14:06 runtime_log
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas   3399680 Feb 24 14:06 result.tar.gz
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas       650 Feb 24 14:06 uJ3LDm4Pc66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm9svKDmtHcUEm.diag
2025-02-24 09:06:51 (10988): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Feb 24 14:06 runtime_log.err
2025-02-24 09:06:51 (10988): Guest Log: Looking for outputfile HITS.43205094._040154.pool.root.1
2025-02-24 09:06:51 (10988): Guest Log: HITS file was successfully produced
2025-02-24 09:06:51 (10988): Guest Log: -rw-------. 1 atlas atlas 327293092 Feb 24 14:04 /home/atlas/RunAtlas/HITS.43205094._040154.pool.root.1
2025-02-24 09:06:54 (10988): Guest Log: Successfully finished the ATLAS job!
2025-02-24 09:06:54 (10988): Guest Log: Copying the results back to the shared directory!
2025-02-24 09:06:54 (10988): Guest Log:  *** Contents of shared directory: ***
2025-02-24 09:06:54 (10988): Guest Log: total 656352
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root 340871414 Feb 24 03:29 ATLAS.root_0
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root 327293092 Feb 24 14:06 HITS.pool.root.1
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root     11033 Feb 24 03:29 init_data.xml
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root    503558 Feb 24 03:27 input.tar.gz
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root   3399680 Feb 24 14:06 result.tar.gz
2025-02-24 09:06:54 (10988): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 03:27 start_atlas.sh
2025-02-24 09:06:54 (10988): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 09:06:54 (10988): VM Completion File Detected.
2025-02-24 09:06:54 (10988): Powering off VM.
2025-02-24 09:06:54 (10988): Successfully stopped VM.
2025-02-24 09:06:54 (10988): Deregistering VM. (boinc_5507efd3f9ced169, slot#2)
2025-02-24 09:06:54 (10988): Removing network bandwidth throttle group from VM.
2025-02-24 09:06:55 (10988): Removing VM from VirtualBox.
09:07:00 (10988): called boinc_finish(0)

</stderr_txt>
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