Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 06:47:58 (10020): Detected: vboxwrapper 26206
2025-02-24 06:47:58 (10020): Detected: BOINC client v7.16.20
2025-02-24 06:47:58 (10020): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-02-24 06:47:58 (10020): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 06:47:59 (10020): Create VM. (boinc_aec25e42b7216f1d, slot#2)
2025-02-24 06:47:59 (10020): Setting Memory Size for VM. (4800MB)
2025-02-24 06:48:00 (10020): Setting CPU Count for VM. (8)
2025-02-24 06:48:00 (10020): Setting Chipset Options for VM.
2025-02-24 06:48:00 (10020): Setting Graphics Controller Options for VM.
2025-02-24 06:48:01 (10020): Setting Boot Options for VM.
2025-02-24 06:48:01 (10020): Setting Network Configuration for NAT.
2025-02-24 06:48:01 (10020): Enabling VM Network Access.
2025-02-24 06:48:01 (10020): Disabling USB Support for VM.
2025-02-24 06:48:02 (10020): Disabling COM Port Support for VM.
2025-02-24 06:48:02 (10020): Disabling LPT Port Support for VM.
2025-02-24 06:48:02 (10020): Disabling Audio Support for VM.
2025-02-24 06:48:02 (10020): Disabling Clipboard Support for VM.
2025-02-24 06:48:03 (10020): Disabling Drag and Drop Support for VM.
2025-02-24 06:48:03 (10020): Adding storage controller(s) to VM.
2025-02-24 06:48:03 (10020): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 06:48:04 (10020): Adding VirtualBox Guest Additions to VM.
2025-02-24 06:48:04 (10020): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 06:48:04 (10020): forwarding host port 57974 to guest port 80
2025-02-24 06:48:04 (10020): Enabling remote desktop for VM.
2025-02-24 06:48:05 (10020): Required extension pack not installed, remote desktop not enabled.
2025-02-24 06:48:05 (10020): Enabling shared directory for VM.
2025-02-24 06:48:05 (10020): Starting VM using VBoxManage interface. (boinc_aec25e42b7216f1d, slot#2)
2025-02-24 06:48:09 (10020): Successfully started VM. (PID = '6472')
2025-02-24 06:48:09 (10020): Reporting VM Process ID to BOINC.
2025-02-24 06:48:09 (10020): Guest Log: BIOS: VirtualBox 6.1.50
2025-02-24 06:48:09 (10020): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 06:48:09 (10020): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 06:48:09 (10020): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 06:48:09 (10020): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 06:48:09 (10020): Detected: Web Application Enabled (http://localhost:57974)
2025-02-24 06:48:09 (10020): Preference change detected
2025-02-24 06:48:09 (10020): Setting CPU throttle for VM. (100%)
2025-02-24 06:48:10 (10020): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 06:48:12 (10020): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 06:48:12 (10020): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 06:48:15 (10020): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 06:48:15 (10020): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 06:48:15 (10020): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 06:48:20 (10020): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 06:48:20 (10020): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 06:48:26 (10020): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000116 main     Log opened 2025-02-24T06:48:23.745219000Z
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000190 main     OS Product: Linux
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000209 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000240 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000240 main     Process ID: 1365
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000241 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 06:48:26 (10020): Guest Log: 00:00:00.000693 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 06:48:26 (10020): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 06:48:26 (10020): Guest Log: [INFO] Mounting shared directory
2025-02-24 06:48:26 (10020): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 06:48:29 (10020): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 06:48:29 (10020): Guest Log: [INFO] Detected branch: prod
2025-02-24 06:48:29 (10020): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 06:48:29 (10020): Guest Log: Copying input files
2025-02-24 06:48:30 (10020): Guest Log: Copied input files into RunAtlas.
2025-02-24 06:48:30 (10020): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 06:48:30 (10020): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 06:48:30 (10020): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 06:48:30 (10020): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 06:48:36 (10020): Guest Log: 00:00:10.002278 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 449 405 000ns (GuestNow=1 740 376 115 297 467 000 ns GuestLast=1 740 379 703 746 872 000 ns fSetTimeLastLoop=true )
2025-02-24 06:48:39 (10020): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 06:48:39 (10020): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 06:48:39 (10020): Guest Log: 2.6.3.0 1641 0 30180 143000 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 06:48:40 (10020): Guest Log: copied the webapp to /var/www
2025-02-24 06:48:40 (10020): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-24 06:48:40 (10020): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-24 06:48:40 (10020): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 06:48:40 (10020): Guest Log:  *** Starting ATLAS job. (PandaID=6523681218 taskID=43205075) ***
2025-02-24 08:28:18 (10020): Status Report: Elapsed Time: '6000.000000'
2025-02-24 08:28:18 (10020): Status Report: CPU Time: '40744.734375'
2025-02-24 09:22:27 (10020): Guest Log:  *** Job finished ***
2025-02-24 09:22:27 (10020): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:09,390 | INFO     | [data] queue_monitor thread has finished
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:14,054 | INFO     | job.realtimelogging is not enabled
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:15,058 | INFO     | [payload] run_realtimelog thread has finished
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:16,259 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139726020216640)>', '<ExcThread(monitor, started 139725058852608)>']
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:17,258 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:17,258 | INFO     | [monitor] control thread has ended
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,265 | INFO     | all workflow threads have been joined
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,265 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,265 | INFO     | traces error code: 0
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,345 [wrapper] ==== pilot stdout END ====
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,348 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,351 [wrapper] pilotpid: 6009
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,354 [wrapper] Pilot exit status: 0
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,822 [wrapper] pandaids: 6523681218
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,843 [wrapper] cleanup supervisor_pilot  8604 6010
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,847 [wrapper] Test setup, not cleaning
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,855 [wrapper] apfmon messages muted
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,859 [wrapper] ==== wrapper stdout END ====
2025-02-24 09:22:27 (10020): Guest Log: 2025-02-24 08:22:21,862 [wrapper] ==== wrapper stderr END ====
2025-02-24 09:22:27 (10020): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 09:22:27 (10020): Guest Log:     "exeErrorCode": 0,
2025-02-24 09:22:27 (10020): Guest Log:     "exeErrorDiag": "",
2025-02-24 09:22:27 (10020): Guest Log:     "pilotErrorCode": 0,
2025-02-24 09:22:27 (10020): Guest Log:     "pilotErrorDiag": "",
2025-02-24 09:22:27 (10020): Guest Log:  *** Listing of results directory ***
2025-02-24 09:22:27 (10020): Guest Log: total 324588
2025-02-24 09:22:27 (10020): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 23 03:38 pilot3.tar.gz
2025-02-24 09:22:27 (10020): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 23 03:40 runpilot2-wrapper.sh
2025-02-24 09:22:27 (10020): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 23 03:40 queuedata.json
2025-02-24 09:22:27 (10020): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 05:48 start_atlas.sh
2025-02-24 09:22:27 (10020): Guest Log: -rwxr-xr-x. 1 atlas atlas    503555 Feb 24 05:48 input.tar.gz
2025-02-24 09:22:27 (10020): Guest Log: -rwxr-xr-x. 1 atlas atlas      8762 Feb 24 05:48 init_data.xml
2025-02-24 09:22:27 (10020): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 05:48 EVNT.43092757._001061.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 09:22:27 (10020): Guest Log: -rw-r--r--. 1 atlas atlas      2556 Feb 24 05:48 pandaJob.out
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 05:48 setup.sh.local
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas    987712 Feb 24 05:49 agis_schedconf.cvmfs.json
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 05:49 agis_ddmendpoints.agis.ALL.json
2025-02-24 09:22:27 (10020): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 05:49 pilot3
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas 326432564 Feb 24 08:21 HITS.43205075._059701.pool.root.1
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 08:21 pilot_heartbeat.json
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 24 08:21 memory_monitor_summary.json
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas    331410 Feb 24 08:21 log.43205075._059701.job.log.tgz.1
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas      7709 Feb 24 08:22 heartbeat.json
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas      4786 Feb 24 08:22 pilotlog.txt
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas    772349 Feb 24 08:22 log.43205075._059701.job.log.1
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 08:22 output.list
2025-02-24 09:22:27 (10020): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 08:22 runtime_log
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas   1126400 Feb 24 08:22 result.tar.gz
2025-02-24 09:22:27 (10020): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Feb 24 08:22 runtime_log.err
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas       654 Feb 24 08:22 cENKDmB2H66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmAheKDmRxym8m.diag
2025-02-24 09:22:27 (10020): Guest Log: Looking for outputfile HITS.43205075._059701.pool.root.1
2025-02-24 09:22:27 (10020): Guest Log: HITS file was successfully produced
2025-02-24 09:22:27 (10020): Guest Log: -rw-------. 1 atlas atlas 326432564 Feb 24 08:21 /home/atlas/RunAtlas/HITS.43205075._059701.pool.root.1
2025-02-24 09:22:27 (10020): Guest Log: Successfully finished the ATLAS job!
2025-02-24 09:22:27 (10020): Guest Log: Copying the results back to the shared directory!
2025-02-24 09:22:27 (10020): Guest Log:  *** Contents of shared directory: ***
2025-02-24 09:22:27 (10020): Guest Log: total 659300
2025-02-24 09:22:27 (10020): Guest Log: -rwxrwxrwx. 1 root root 347023801 Feb 24 05:47 ATLAS.root_0
2025-02-24 09:22:27 (10020): Guest Log: -rwxrwxrwx. 1 root root 326432564 Feb 24  2025 HITS.pool.root.1
2025-02-24 09:22:27 (10020): Guest Log: -rwxrwxrwx. 1 root root      8762 Feb 24 05:47 init_data.xml
2025-02-24 09:22:28 (10020): Guest Log: -rwxrwxrwx. 1 root root    503555 Feb 24 02:55 input.tar.gz
2025-02-24 09:22:28 (10020): Guest Log: -rwxrwxrwx. 1 root root   1126400 Feb 24  2025 result.tar.gz
2025-02-24 09:22:28 (10020): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 02:55 start_atlas.sh
2025-02-24 09:22:28 (10020): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 09:22:28 (10020): VM Completion File Detected.
2025-02-24 09:22:28 (10020): Powering off VM.
2025-02-24 09:22:29 (10020): Successfully stopped VM.
2025-02-24 09:22:29 (10020): Deregistering VM. (boinc_aec25e42b7216f1d, slot#2)
2025-02-24 09:22:29 (10020): Removing network bandwidth throttle group from VM.
2025-02-24 09:22:29 (10020): Removing VM from VirtualBox.
09:22:34 (10020): called boinc_finish(0)

</stderr_txt>
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