Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 13:16:32 (3516): Detected: vboxwrapper 26206
2025-02-24 13:16:32 (3516): Detected: BOINC client v8.0.2
2025-02-24 13:16:33 (3516): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-24 13:16:33 (3516): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 13:16:33 (3516): Create VM. (boinc_09190137a6208e40, slot#1)
2025-02-24 13:16:34 (3516): Setting Memory Size for VM. (4200MB)
2025-02-24 13:16:34 (3516): Setting CPU Count for VM. (2)
2025-02-24 13:16:34 (3516): Setting Chipset Options for VM.
2025-02-24 13:16:35 (3516): Setting Graphics Controller Options for VM.
2025-02-24 13:16:35 (3516): Setting Boot Options for VM.
2025-02-24 13:16:35 (3516): Setting Network Configuration for NAT.
2025-02-24 13:16:36 (3516): Enabling VM Network Access.
2025-02-24 13:16:36 (3516): Disabling USB Support for VM.
2025-02-24 13:16:36 (3516): Disabling COM Port Support for VM.
2025-02-24 13:16:36 (3516): Disabling LPT Port Support for VM.
2025-02-24 13:16:37 (3516): Disabling Audio Support for VM.
2025-02-24 13:16:37 (3516): Disabling Clipboard Support for VM.
2025-02-24 13:16:37 (3516): Disabling Drag and Drop Support for VM.
2025-02-24 13:16:37 (3516): Adding storage controller(s) to VM.
2025-02-24 13:16:38 (3516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 13:16:38 (3516): Adding VirtualBox Guest Additions to VM.
2025-02-24 13:16:39 (3516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 13:16:39 (3516): forwarding host port 56920 to guest port 80
2025-02-24 13:16:39 (3516): Enabling remote desktop for VM.
2025-02-24 13:16:40 (3516): Required extension pack not installed, remote desktop not enabled.
2025-02-24 13:16:40 (3516): Enabling shared directory for VM.
2025-02-24 13:16:40 (3516): Starting VM using VBoxManage interface. (boinc_09190137a6208e40, slot#1)
2025-02-24 13:16:47 (3516): Successfully started VM. (PID = '18932')
2025-02-24 13:16:47 (3516): Reporting VM Process ID to BOINC.
2025-02-24 13:16:47 (3516): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-24 13:16:47 (3516): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 13:16:47 (3516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 13:16:47 (3516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 13:16:47 (3516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 13:16:47 (3516): Detected: Web Application Enabled (http://localhost:56920)
2025-02-24 13:16:47 (3516): Preference change detected
2025-02-24 13:16:47 (3516): Setting CPU throttle for VM. (100%)
2025-02-24 13:16:48 (3516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 13:16:50 (3516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 13:16:50 (3516): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 13:16:52 (3516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 13:16:52 (3516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 13:16:52 (3516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 13:17:39 (3516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 13:17:39 (3516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 13:17:44 (3516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000094 main     Log opened 2025-02-24T13:17:41.846873000Z
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000174 main     OS Product: Linux
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000201 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000223 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000243 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000244 main     Process ID: 1263
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.000244 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 13:17:44 (3516): Guest Log: 00:00:00.001967 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 13:17:44 (3516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 13:17:44 (3516): Guest Log: [INFO] Mounting shared directory
2025-02-24 13:17:44 (3516): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 13:17:54 (3516): Guest Log: 00:00:10.004079 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 630 631 950 000ns (GuestNow=1 740 363 431 218 440 000 ns GuestLast=1 740 403 061 850 390 000 ns fSetTimeLastLoop=true )
2025-02-24 13:17:54 (3516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 13:17:54 (3516): Guest Log: [INFO] Detected branch: prod
2025-02-24 13:17:55 (3516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 13:17:55 (3516): Guest Log: Copying input files
2025-02-24 13:17:57 (3516): Guest Log: Copied input files into RunAtlas.
2025-02-24 13:17:57 (3516): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 13:17:57 (3516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 13:17:57 (3516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 13:17:57 (3516): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 13:18:07 (3516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 13:18:07 (3516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 13:18:07 (3516): Guest Log: 2.6.3.0 1540 0 30156 142995 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 13:18:07 (3516): Guest Log: copied the webapp to /var/www
2025-02-24 13:18:07 (3516): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-24 13:18:07 (3516): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-24 13:18:08 (3516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 13:18:08 (3516): Guest Log:  *** Starting ATLAS job. (PandaID=6526497292 taskID=43205094) ***
2025-02-24 14:57:23 (3516): Status Report: Elapsed Time: '6000.115721'
2025-02-24 14:57:23 (3516): Status Report: CPU Time: '9153.609375'
2025-02-24 16:50:01 (3516): Status Report: Elapsed Time: '12000.995346'
2025-02-24 16:50:01 (3516): Status Report: CPU Time: '22527.687500'
2025-02-24 18:30:56 (3516): Status Report: Elapsed Time: '18001.196489'
2025-02-24 18:30:56 (3516): Status Report: CPU Time: '34516.187500'
2025-02-24 20:11:57 (3516): Status Report: Elapsed Time: '24002.126947'
2025-02-24 20:11:57 (3516): Status Report: CPU Time: '46529.796875'
2025-02-24 21:53:40 (3516): Status Report: Elapsed Time: '30002.814924'
2025-02-24 21:53:40 (3516): Status Report: CPU Time: '58596.921875'
2025-02-24 23:36:25 (3516): Status Report: Elapsed Time: '36003.594988'
2025-02-24 23:36:25 (3516): Status Report: CPU Time: '70781.734375'
2025-02-25 01:17:37 (3516): Status Report: Elapsed Time: '42003.723724'
2025-02-25 01:17:37 (3516): Status Report: CPU Time: '82836.062500'
2025-02-25 02:58:23 (3516): Status Report: Elapsed Time: '48003.731995'
2025-02-25 02:58:23 (3516): Status Report: CPU Time: '94860.781250'
2025-02-25 04:00:43 (3516): Guest Log:  *** Job finished ***
2025-02-25 04:00:43 (3516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 16:59:56,369 | INFO     | [data] copytool_out thread has finished
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 16:59:56,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:00,469 | INFO     | [data] queue_monitor thread has finished
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:01,181 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851614373696)>', '<ExcThread(monitor, started 139850577606400)>']
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:01,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:01,274 | INFO     | [monitor] control thread has ended
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,188 | INFO     | all workflow threads have been joined
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,188 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,189 | INFO     | traces error code: 0
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,189 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,306 [wrapper] ==== pilot stdout END ====
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,310 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,314 [wrapper] pilotpid: 5857
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,317 [wrapper] Pilot exit status: 0
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,810 [wrapper] pandaids: 6526497292
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,838 [wrapper] cleanup supervisor_pilot  8014 5858
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,842 [wrapper] Test setup, not cleaning
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,849 [wrapper] apfmon messages muted
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,854 [wrapper] ==== wrapper stdout END ====
2025-02-25 04:00:43 (3516): Guest Log: 2025-02-24 17:00:06,858 [wrapper] ==== wrapper stderr END ====
2025-02-25 04:00:43 (3516): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 04:00:43 (3516): Guest Log:     "exeErrorCode": 0,
2025-02-25 04:00:43 (3516): Guest Log:     "exeErrorDiag": "",
2025-02-25 04:00:43 (3516): Guest Log:     "pilotErrorCode": 0,
2025-02-25 04:00:43 (3516): Guest Log:     "pilotErrorDiag": "",
2025-02-25 04:00:43 (3516): Guest Log:  *** Listing of results directory ***
2025-02-25 04:00:43 (3516): Guest Log: total 341600
2025-02-25 04:00:43 (3516): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 23 15:52 pilot3.tar.gz
2025-02-25 04:00:43 (3516): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 23 16:00 runpilot2-wrapper.sh
2025-02-25 04:00:43 (3516): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 23 16:00 queuedata.json
2025-02-25 04:00:43 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas      9002 Feb 24 02:17 init_data.xml
2025-02-25 04:00:43 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas    503552 Feb 24 02:17 input.tar.gz
2025-02-25 04:00:43 (3516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 02:17 start_atlas.sh
2025-02-25 04:00:43 (3516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 02:17 EVNT.43092757._002057.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 04:00:43 (3516): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Feb 24 02:17 pandaJob.out
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 02:17 setup.sh.local
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas    987720 Feb 24 02:19 agis_schedconf.cvmfs.json
2025-02-25 04:00:43 (3516): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 02:20 pilot3
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas 328622411 Feb 24 16:58 HITS.43205094._039761.pool.root.1
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas        96 Feb 24 16:59 pilot_heartbeat.json
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas      1021 Feb 24 16:59 memory_monitor_summary.json
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 16:59 agis_ddmendpoints.agis.ALL.json
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas    798427 Feb 24 16:59 log.43205094._039761.job.log.tgz.1
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas      7709 Feb 24 16:59 heartbeat.json
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas      4777 Feb 24 17:00 pilotlog.txt
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas   7920312 Feb 24 17:00 log.43205094._039761.job.log.1
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 17:00 output.list
2025-02-25 04:00:43 (3516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 17:00 runtime_log
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas   8734720 Feb 24 17:00 result.tar.gz
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas       669 Feb 24 17:00 znQODmcaT66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmr2eKDmc4pTgm.diag
2025-02-25 04:00:43 (3516): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb 24 17:00 runtime_log.err
2025-02-25 04:00:43 (3516): Guest Log: Looking for outputfile HITS.43205094._039761.pool.root.1
2025-02-25 04:00:43 (3516): Guest Log: HITS file was successfully produced
2025-02-25 04:00:43 (3516): Guest Log: -rw-------. 1 atlas atlas 328622411 Feb 24 16:58 /home/atlas/RunAtlas/HITS.43205094._039761.pool.root.1
2025-02-25 04:00:44 (3516): Guest Log: Successfully finished the ATLAS job!
2025-02-25 04:00:44 (3516): Guest Log: Copying the results back to the shared directory!
2025-02-25 04:00:44 (3516): Guest Log:  *** Contents of shared directory: ***
2025-02-25 04:00:44 (3516): Guest Log: total 663804
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root 341833914 Feb 24 02:16 ATLAS.root_0
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root 328622411 Feb 24  2025 HITS.pool.root.1
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root      9002 Feb 24 02:16 init_data.xml
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root    503552 Feb 24 02:15 input.tar.gz
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root   8734720 Feb 24  2025 result.tar.gz
2025-02-25 04:00:44 (3516): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 02:15 start_atlas.sh
2025-02-25 04:00:44 (3516): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 04:00:44 (3516): VM Completion File Detected.
2025-02-25 04:00:44 (3516): Powering off VM.
2025-02-25 04:00:45 (3516): Successfully stopped VM.
2025-02-25 04:00:45 (3516): Deregistering VM. (boinc_09190137a6208e40, slot#1)
2025-02-25 04:00:45 (3516): Removing network bandwidth throttle group from VM.
2025-02-25 04:00:46 (3516): Removing VM from VirtualBox.
04:00:51 (3516): called boinc_finish(0)

</stderr_txt>
]]>

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