Name AXUNDmpYM66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgGvKDm1gdpQm_2
Workunit 230524169
Created 23 Feb 2025, 21:03:44 UTC
Sent 24 Feb 2025, 1:32:05 UTC
Report deadline 4 Mar 2025, 1:32:05 UTC
Received 24 Feb 2025, 3:39:28 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 10852359
Run time 6 min 51 sec
CPU time 3 min 16 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 24.72 GFLOPS
Application version ATLAS Simulation v3.01 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 655.80 MB
Peak swap size 16.51 GB
Peak disk usage 671.02 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:04:01 (25581): wrapper (7.7.26015): starting
04:04:01 (25581): wrapper: running run_atlas (--nthreads 12)
[2025-02-24 04:04:01] Arguments: --nthreads 12
[2025-02-24 04:04:01] Threads: 12
[2025-02-24 04:04:01] Checking for CVMFS
[2025-02-24 04:04:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-24 04:04:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-24 04:04:02] Running cvmfs_config stat atlas.cern.ch
[2025-02-24 04:04:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-24 04:04:02] 2.11.2.0 13457 2492 85400 142995 3 185 23704931 25165825 0 130560 0 25764582 99.995 641364 9934 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-02-24 04:04:02] CVMFS is ok
[2025-02-24 04:04:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-24 04:04:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-24 04:04:02] Further information can be found at the LHC@home message board.
[2025-02-24 04:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-24 04:04:03] Checking for apptainer binary...
[2025-02-24 04:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-24 04:04:03] Running /usr/bin/apptainer --version
[2025-02-24 04:04:03] apptainer version 1.3.2-1.el7
[2025-02-24 04:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-24 04:04:07] cg-vwn116.simple-grid.lan
[2025-02-24 04:04:07] apptainer works
[2025-02-24 04:04:07] Set ATHENA_PROC_NUMBER=12
[2025-02-24 04:04:07] Set ATHENA_CORE_NUMBER=12
[2025-02-24 04:04:07] Starting ATLAS job with PandaID=6524058486
[2025-02-24 04:04:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-24 04:10:50]  *** The last 200 lines of the pilot log: ***
[2025-02-24 04:10:50] 2025-02-24 03:09:56,853 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-24 04:10:50] 2025-02-24 03:09:56,912 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#6/#20)
[2025-02-24 04:10:50] 2025-02-24 03:09:58,368 | INFO     | CPU arch script returned: x86-64-v1
[2025-02-24 04:10:50] 2025-02-24 03:09:58,369 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/memory_monitor_output.txt
[2025-02-24 04:10:50] 2025-02-24 03:09:58,370 | INFO     | memory summary dictionary not yet available
[2025-02-24 04:10:50] 2025-02-24 03:09:58,372 | INFO     | ..............................
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . Timing measurements:
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . get job = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . initial setup = 2 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,374 | INFO     | . payload setup = 24 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,374 | INFO     | . stage-in = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . payload execution = 232 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . stage-out = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . log creation = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,376 | INFO     | ..............................
[2025-02-24 04:10:50] 2025-02-24 03:09:58,416 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-02-24 04:10:50] 2025-02-24 03:09:58,417 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/pilotlog.txt
[2025-02-24 04:10:50] 2025-02-24 03:09:58,472 | WARNING  | 
[2025-02-24 04:10:50] [begin log extracts]
[2025-02-24 04:10:50] - Log from pilotlog.txt -
[2025-02-24 04:10:50] 2025-02-24 03:09:54,348 | INFO     | monitor loop #71: job 0:6524058486 is in state 'failed'
[2025-02-24 04:10:50] 2025-02-24 03:09:54,348 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-24 04:10:50] 2025-02-24 03:09:56,852 | INFO     | monitor loop #72: job 0:6524058486 is in state 'failed'
[2025-02-24 04:10:50] 2025-02-24 03:09:56,853 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-02-24 04:10:50] 2025-02-24 03:09:56,912 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#6/#20)
[2025-02-24 04:10:50] 2025-02-24 03:09:58,368 | INFO     | CPU arch script returned: x86-64-v1
[2025-02-24 04:10:50] 2025-02-24 03:09:58,369 | WARNING  | file does not exist either: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/memory_monitor_output.txt
[2025-02-24 04:10:50] 2025-02-24 03:09:58,370 | INFO     | memory summary dictionary not yet available
[2025-02-24 04:10:50] 2025-02-24 03:09:58,372 | INFO     | ..............................
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . Timing measurements:
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . get job = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,373 | INFO     | . initial setup = 2 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,374 | INFO     | . payload setup = 24 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,374 | INFO     | . stage-in = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . payload execution = 232 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . stage-out = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,375 | INFO     | . log creation = 0 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,376 | INFO     | ..............................
[2025-02-24 04:10:50] 2025-02-24 03:09:58,416 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-02-24 04:10:50] 2025-02-24 03:09:58,417 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/pilotlog.txt
[2025-02-24 04:10:50] [end log extracts]
[2025-02-24 04:10:50] 2025-02-24 03:09:58,916 | INFO     | 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,916 | INFO     | job summary report
[2025-02-24 04:10:50] 2025-02-24 03:09:58,917 | INFO     | --------------------------------------------------
[2025-02-24 04:10:50] 2025-02-24 03:09:58,917 | INFO     | PanDA job id: 6524058486
[2025-02-24 04:10:50] 2025-02-24 03:09:58,917 | INFO     | task id: 43205094
[2025-02-24 04:10:50] 2025-02-24 03:09:58,918 | INFO     | errors: (none)
[2025-02-24 04:10:50] 2025-02-24 03:09:58,918 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,918 | INFO     | pilot state: failed 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,919 | INFO     | transexitcode: 0
[2025-02-24 04:10:50] 2025-02-24 03:09:58,919 | INFO     | exeerrorcode: 0
[2025-02-24 04:10:50] 2025-02-24 03:09:58,919 | INFO     | exeerrordiag: 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,920 | INFO     | exitcode: 0
[2025-02-24 04:10:50] 2025-02-24 03:09:58,920 | INFO     | exitmsg: 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,920 | INFO     | cpuconsumptiontime: 161 s
[2025-02-24 04:10:50] 2025-02-24 03:09:58,921 | INFO     | nevents: 0
[2025-02-24 04:10:50] 2025-02-24 03:09:58,921 | INFO     | neventsw: 0
[2025-02-24 04:10:50] 2025-02-24 03:09:58,921 | INFO     | pid: 3312
[2025-02-24 04:10:50] 2025-02-24 03:09:58,922 | INFO     | pgrp: 3312
[2025-02-24 04:10:50] 2025-02-24 03:09:58,922 | INFO     | corecount: 12
[2025-02-24 04:10:50] 2025-02-24 03:09:58,922 | INFO     | event service: False
[2025-02-24 04:10:50] 2025-02-24 03:09:58,923 | INFO     | sizes: {0: 2383032, 1: 2383287, 2: 2383315, 12: 2383315, 17: 2383549, 23: 2383577, 258: 2387621, 259: 2391915, 261: 2391971, 278: 2391971}
[2025-02-24 04:10:50] 2025-02-24 03:09:58,923 | INFO     | --------------------------------------------------
[2025-02-24 04:10:50] 2025-02-24 03:09:58,923 | INFO     | 
[2025-02-24 04:10:50] 2025-02-24 03:09:58,924 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-02-24 04:10:50] 2025-02-24 03:09:59,005 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,006 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,006 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,007 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,007 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,008 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,008 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,008 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,010 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,012 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-24 04:10:50] 2025-02-24 03:09:59,012 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,012 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-24 04:10:50] 2025-02-24 03:09:59,013 | INFO     | job 6524058486 has completed (purged errors)
[2025-02-24 04:10:50] 2025-02-24 03:09:59,014 | INFO     | overall cleanup function is called
[2025-02-24 04:10:50] 2025-02-24 03:09:59,928 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#7/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,024 | INFO     | --- collectZombieJob: --- 10, [3312]
[2025-02-24 04:10:50] 2025-02-24 03:10:00,024 | INFO     | zombie collector waiting for pid 3312
[2025-02-24 04:10:50] 2025-02-24 03:10:00,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-24 04:10:50] 2025-02-24 03:10:00,025 | INFO     | collected zombie processes
[2025-02-24 04:10:50] 2025-02-24 03:10:00,026 | INFO     | will attempt to kill all subprocesses of pid=3312
[2025-02-24 04:10:50] 2025-02-24 03:10:00,191 | INFO     | process IDs to be killed: [3312] (in reverse order)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,344 | WARNING  | found no corresponding commands to process id(s)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-24 04:10:50] 2025-02-24 03:10:00,353 | INFO     | did not find any defunct processes belonging to 3312
[2025-02-24 04:10:50] 2025-02-24 03:10:00,360 | INFO     | did not find any defunct processes belonging to 3312
[2025-02-24 04:10:50] 2025-02-24 03:10:00,361 | INFO     | ready for new job
[2025-02-24 04:10:50] 2025-02-24 03:10:00,361 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-24 04:10:50] 2025-02-24 03:10:00,365 | INFO     | **************************************
[2025-02-24 04:10:50] 2025-02-24 03:10:00,366 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-24 04:10:50] 2025-02-24 03:10:00,366 | INFO     | **************************************
[2025-02-24 04:10:50] 2025-02-24 03:10:00,367 | INFO     | 
[2025-02-24 04:10:50] 2025-02-24 03:10:00,369 | INFO     | pilot is running in a VM
[2025-02-24 04:10:50] 2025-02-24 03:10:00,369 | INFO     | architecture information:
[2025-02-24 04:10:50] 2025-02-24 03:10:00,371 | INFO     | executing command: cat /etc/os-release
[2025-02-24 04:10:50] 2025-02-24 03:10:00,429 | INFO     | cat /etc/os-release:
[2025-02-24 04:10:50] NAME="CentOS Linux"
[2025-02-24 04:10:50] VERSION="7 (Core)"
[2025-02-24 04:10:50] ID="centos"
[2025-02-24 04:10:50] ID_LIKE="rhel fedora"
[2025-02-24 04:10:50] VERSION_ID="7"
[2025-02-24 04:10:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-24 04:10:50] ANSI_COLOR="0;31"
[2025-02-24 04:10:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-24 04:10:50] HOME_URL="https://www.centos.org/"
[2025-02-24 04:10:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-24 04:10:50] 
[2025-02-24 04:10:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-24 04:10:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-24 04:10:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-24 04:10:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-24 04:10:50] 
[2025-02-24 04:10:50] 2025-02-24 03:10:00,430 | INFO     | **************************************
[2025-02-24 04:10:50] 2025-02-24 03:10:00,934 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-02-24 04:10:50] 2025-02-24 03:10:00,991 | INFO     | sufficient remaining disk space (255347130368 B)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,992 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-24 04:10:50] 2025-02-24 03:10:00,992 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,993 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-24 04:10:50] 2025-02-24 03:10:00,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-24 04:10:50] 2025-02-24 03:10:00,995 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-24 04:10:50] 2025-02-24 03:10:00,997 | INFO     | found 0 job(s) in 20 queues
[2025-02-24 04:10:50] 2025-02-24 03:10:00,999 | INFO     | aborting loop
[2025-02-24 04:10:50] 2025-02-24 03:10:01,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-24 04:10:50] 2025-02-24 03:10:01,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-24 04:10:50] 2025-02-24 03:10:01,050 | INFO     | all payload control threads have been joined
[2025-02-24 04:10:50] 2025-02-24 03:10:01,092 | INFO     | all data control threads have been joined
[2025-02-24 04:10:50] 2025-02-24 03:10:01,939 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-24 04:10:50] 2025-02-24 03:10:01,999 | INFO     | [job] retrieve thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,006 | INFO     | [job] job monitor thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,057 | INFO     | [payload] control thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,098 | INFO     | [data] control thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,312 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,397 | INFO     | all job control threads have been joined
[2025-02-24 04:10:50] 2025-02-24 03:10:02,507 | INFO     | [payload] validate_post thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,521 | INFO     | [payload] failed_post thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,529 | INFO     | [job] create_data_payload thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,861 | INFO     | [payload] validate_pre thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:02,945 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#8/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:03,004 | INFO     | [data] copytool_out thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:03,116 | INFO     | [job] validate thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:03,339 | INFO     | [data] copytool_in thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:03,404 | INFO     | [job] control thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:03,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-24 04:10:50] 2025-02-24 03:10:04,690 | INFO     | [job] queue monitor thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:05,947 | INFO     | [data] queue_monitor thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:05,961 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#9/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:08,977 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#10/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:11,993 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#11/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:15,009 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#12/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:18,025 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#13/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:21,041 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#14/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:24,057 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#15/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:27,073 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#16/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:30,089 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#17/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:33,106 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#18/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:36,122 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#19/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:39,138 | INFO     | taking a short nap (3 s) to allow the memory monitor to finish writing to the summary file (#20/#20)
[2025-02-24 04:10:50] 2025-02-24 03:10:42,154 | WARNING  | file copy failure: path does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/memory_monitor_summary.json
[2025-02-24 04:10:50] 2025-02-24 03:10:42,156 | WARNING  | failed to copy memory monitor output: error code: 1103, message: No such file or directory
[2025-02-24 04:10:50] details: ('file copy failure: path does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/memory_monitor_summary.json',)
[2025-02-24 04:10:50] 2025-02-24 03:10:42,184 | INFO     | found no lingering processes
[2025-02-24 04:10:50] 2025-02-24 03:10:42,185 | INFO     | CPU consumption time: 277.36 s (rounded to 277 s)
[2025-02-24 04:10:50] 2025-02-24 03:10:42,186 | WARNING  | main payload execution returned non-zero exit code: 65
[2025-02-24 04:10:50] 2025-02-24 03:10:42,187 | INFO     | file does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/payload.stderr
[2025-02-24 04:10:50] 2025-02-24 03:10:42,187 | WARNING  | found no payload stdout
[2025-02-24 04:10:50] 2025-02-24 03:10:42,189 | WARNING  | job report does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/jobReport.json
[2025-02-24 04:10:50] 2025-02-24 03:10:42,189 | WARNING  | metadata does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/metadata.xml
[2025-02-24 04:10:50] 2025-02-24 03:10:42,190 | WARNING  | file does not exist: /var/lib/boinc/slots/1/PanDA_Pilot-6524058486/metadata.xml
[2025-02-24 04:10:50] 2025-02-24 03:10:42,191 | INFO     | generated guid for lfn=HITS.43205094._038702.pool.root.1: AA1B431F-E477-48A8-93D3-EF27DEC2FC5A
[2025-02-24 04:10:50] 2025-02-24 03:10:42,191 | WARNING  | aborting payload error diagnosis since an error has already been set: [65, 1187]
[2025-02-24 04:10:50] 2025-02-24 03:10:43,343 | INFO     | [payload] execute_payloads thread has finished
[2025-02-24 04:10:50] 2025-02-24 03:10:44,502 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071724947264)>', '<ExcThread(monitor, started 140071156049664)>']
[2025-02-24 04:10:50] 2025-02-24 03:10:45,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-24 04:10:50] 2025-02-24 03:10:45,231 | INFO     | [monitor] control thread has ended
[2025-02-24 04:10:50] 2025-02-24 03:10:49,523 | INFO     | all workflow threads have been joined
[2025-02-24 04:10:50] 2025-02-24 03:10:49,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-24 04:10:50] 2025-02-24 03:10:49,525 | INFO     | traces error code: 0
[2025-02-24 04:10:50] 2025-02-24 03:10:49,526 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-24 04:10:50] 2025-02-24 03:10:49,814 [wrapper] ==== pilot stdout END ====
[2025-02-24 04:10:50] 2025-02-24 03:10:49,827 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-24 04:10:50] 2025-02-24 03:10:49,840 [wrapper] pilotpid: 29238
[2025-02-24 04:10:50] 2025-02-24 03:10:49,854 [wrapper] Pilot exit status: 0
[2025-02-24 04:10:50] 2025-02-24 03:10:49,905 [wrapper] pandaids: 6524058486
[2025-02-24 04:10:50] 2025-02-24 03:10:50,027 [wrapper] cleanup supervisor_pilot 29244 29239
[2025-02-24 04:10:50] 2025-02-24 03:10:50,040 [wrapper] Test setup, not cleaning
[2025-02-24 04:10:50] 2025-02-24 03:10:50,064 [wrapper] apfmon messages muted
[2025-02-24 04:10:50] 2025-02-24 03:10:50,076 [wrapper] ==== wrapper stdout END ====
[2025-02-24 04:10:50] 2025-02-24 03:10:50,088 [wrapper] ==== wrapper stderr END ====
[2025-02-24 04:10:50]  *** Error codes and diagnostics ***
[2025-02-24 04:10:50]     "exeErrorCode": 0,
[2025-02-24 04:10:50]     "exeErrorDiag": "",
[2025-02-24 04:10:50]     "pilotErrorCode": 0,
[2025-02-24 04:10:50]     "pilotErrorDiag": "",
[2025-02-24 04:10:50]  *** Listing of results directory ***
[2025-02-24 04:10:50] total 343840
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc    491065 Feb 23 09:18 pilot3.tar.gz
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc      5118 Feb 23 09:30 queuedata.json
[2025-02-24 04:10:50] -rwx------. 1 boinc boinc     35865 Feb 23 09:30 runpilot2-wrapper.sh
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc       100 Feb 24 04:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-24 04:10:50] -rwxr-xr-x. 1 boinc boinc      7986 Feb 24 04:04 run_atlas
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc       105 Feb 24 04:04 job.xml
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc 347952269 Feb 24 04:04 EVNT.43092757._001980.pool.root.1
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc      6119 Feb 24 04:04 init_data.xml
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc     17569 Feb 24 04:04 start_atlas.sh
[2025-02-24 04:10:50] drwxrwx--x. 2 boinc boinc        68 Feb 24 04:04 shared
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc    503558 Feb 24 04:04 input.tar.gz
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc         0 Feb 24 04:04 boinc_lockfile
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc      2547 Feb 24 04:04 pandaJob.out
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc       424 Feb 24 04:04 setup.sh.local
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc    987720 Feb 24 04:04 agis_schedconf.cvmfs.json
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc   1582569 Feb 24 04:04 agis_ddmendpoints.agis.ALL.json
[2025-02-24 04:10:50] drwx------. 4 boinc boinc      4096 Feb 24 04:04 pilot3
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc     46532 Feb 24 04:09 log.43205094._038702.job.log.tgz.1
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc        95 Feb 24 04:09 pilot_heartbeat.json
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc       526 Feb 24 04:09 boinc_task_state.xml
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc      7816 Feb 24 04:09 heartbeat.json
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc      8192 Feb 24 04:10 boinc_mmap_file
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc      7638 Feb 24 04:10 pilotlog.txt
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc        24 Feb 24 04:10 wrapper_checkpoint.txt
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc    128799 Feb 24 04:10 log.43205094._038702.job.log.1
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc       188 Feb 24 04:10 output.list
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc       620 Feb 24 04:10 runtime_log
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc    194560 Feb 24 04:10 result.tar.gz
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc     10861 Feb 24 04:10 runtime_log.err
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc       643 Feb 24 04:10 AXUNDmpYM66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmgGvKDm1gdpQm.diag
[2025-02-24 04:10:50] -rw-r--r--. 1 boinc boinc     22562 Feb 24 04:10 stderr.txt
[2025-02-24 04:10:50] No HITS result produced
[2025-02-24 04:10:50]  *** Contents of shared directory: ***
[2025-02-24 04:10:50] total 340504
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc 347952269 Feb 24 04:04 ATLAS.root_0
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc     17569 Feb 24 04:04 start_atlas.sh
[2025-02-24 04:10:50] -rw-r--r--. 2 boinc boinc    503558 Feb 24 04:04 input.tar.gz
[2025-02-24 04:10:50] -rw-------. 1 boinc boinc    194560 Feb 24 04:10 result.tar.gz
04:10:51 (25581): run_atlas exited; CPU time 196.813770
04:10:51 (25581): called boinc_finish(0)

</stderr_txt>
]]>


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