Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 20:17:59 (7516): Detected: vboxwrapper 26206
2025-02-23 20:17:59 (7516): Detected: BOINC client v8.0.4
2025-02-23 20:17:59 (7516): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-02-23 20:17:59 (7516): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 20:18:00 (7516): Create VM. (boinc_993fb76772cfe08c, slot#2)
2025-02-23 20:18:00 (7516): Setting Memory Size for VM. (4400MB)
2025-02-23 20:18:01 (7516): Setting CPU Count for VM. (4)
2025-02-23 20:18:01 (7516): Setting Chipset Options for VM.
2025-02-23 20:18:01 (7516): Setting Graphics Controller Options for VM.
2025-02-23 20:18:01 (7516): Setting Boot Options for VM.
2025-02-23 20:18:02 (7516): Setting Network Configuration for NAT.
2025-02-23 20:18:02 (7516): Enabling VM Network Access.
2025-02-23 20:18:02 (7516): Disabling USB Support for VM.
2025-02-23 20:18:02 (7516): Disabling COM Port Support for VM.
2025-02-23 20:18:03 (7516): Disabling LPT Port Support for VM.
2025-02-23 20:18:03 (7516): Disabling Audio Support for VM.
2025-02-23 20:18:03 (7516): Disabling Clipboard Support for VM.
2025-02-23 20:18:03 (7516): Disabling Drag and Drop Support for VM.
2025-02-23 20:18:04 (7516): Adding storage controller(s) to VM.
2025-02-23 20:18:04 (7516): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 20:18:04 (7516): Adding VirtualBox Guest Additions to VM.
2025-02-23 20:18:05 (7516): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 20:18:05 (7516): forwarding host port 61975 to guest port 80
2025-02-23 20:18:05 (7516): Enabling remote desktop for VM.
2025-02-23 20:18:05 (7516): Required extension pack not installed, remote desktop not enabled.
2025-02-23 20:18:05 (7516): Enabling shared directory for VM.
2025-02-23 20:18:06 (7516): Starting VM using VBoxManage interface. (boinc_993fb76772cfe08c, slot#2)
2025-02-23 20:18:11 (7516): Successfully started VM. (PID = '1796')
2025-02-23 20:18:11 (7516): Reporting VM Process ID to BOINC.
2025-02-23 20:18:11 (7516): Guest Log: BIOS: VirtualBox 7.1.6
2025-02-23 20:18:11 (7516): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 20:18:11 (7516): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 20:18:11 (7516): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 20:18:11 (7516): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 20:18:11 (7516): Detected: Web Application Enabled (http://localhost:61975)
2025-02-23 20:18:11 (7516): Preference change detected
2025-02-23 20:18:11 (7516): Setting CPU throttle for VM. (60%)
2025-02-23 20:18:11 (7516): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 20:18:13 (7516): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 20:18:13 (7516): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 20:18:16 (7516): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 20:18:16 (7516): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 20:18:16 (7516): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 20:18:22 (7516): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 20:18:22 (7516): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 20:18:29 (7516): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000178 main     Log opened 2025-02-23T20:18:27.273990000Z
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000261 main     OS Product: Linux
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000318 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000341 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000342 main     Process ID: 1312
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.000342 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 20:18:29 (7516): Guest Log: 00:00:00.001021 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 20:18:29 (7516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 20:18:29 (7516): Guest Log: [INFO] Mounting shared directory
2025-02-23 20:18:29 (7516): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 20:18:30 (7516): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 20:18:30 (7516): Guest Log: [INFO] Detected branch: prod
2025-02-23 20:18:30 (7516): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 20:18:30 (7516): Guest Log: Copying input files
2025-02-23 20:18:33 (7516): Guest Log: Copied input files into RunAtlas.
2025-02-23 20:18:33 (7516): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 20:18:33 (7516): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 20:18:33 (7516): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 20:18:33 (7516): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 20:18:39 (7516): Guest Log: 00:00:10.047397 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 465 159 000ns (GuestNow=1 740 359 918 742 654 000 ns GuestLast=1 740 341 907 277 495 000 ns fSetTimeLastLoop=true )
2025-02-23 20:18:42 (7516): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 20:18:42 (7516): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 20:18:42 (7516): Guest Log: 2.6.3.0 1589 0 32008 142994 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 20:18:43 (7516): Guest Log: copied the webapp to /var/www
2025-02-23 20:18:43 (7516): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-23 20:18:43 (7516): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-23 20:18:43 (7516): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 20:18:43 (7516): Guest Log:  *** Starting ATLAS job. (PandaID=6523359884 taskID=43078919) ***
2025-02-23 21:58:15 (7516): Status Report: Elapsed Time: '6000.000000'
2025-02-23 21:58:15 (7516): Status Report: CPU Time: '12115.781250'
2025-02-23 23:38:20 (7516): Status Report: Elapsed Time: '12000.000000'
2025-02-23 23:38:20 (7516): Status Report: CPU Time: '26589.000000'
2025-02-24 01:18:24 (7516): Status Report: Elapsed Time: '18000.000000'
2025-02-24 01:18:24 (7516): Status Report: CPU Time: '41066.187500'
2025-02-24 02:58:28 (7516): Status Report: Elapsed Time: '24000.000000'
2025-02-24 02:58:28 (7516): Status Report: CPU Time: '55537.500000'
2025-02-24 03:32:27 (7516): Guest Log:  *** Job finished ***
2025-02-24 03:32:27 (7516): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:12,936 | INFO     | [data] queue_monitor thread has finished
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:19,644 | INFO     | job.realtimelogging is not enabled
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:20,646 | INFO     | [payload] run_realtimelog thread has finished
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:21,588 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442055841600)>', '<ExcThread(monitor, started 140441353688832)>']
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:21,968 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:21,968 | INFO     | [monitor] control thread has ended
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,600 | INFO     | all workflow threads have been joined
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,600 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,600 | INFO     | traces error code: 0
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,655 [wrapper] ==== pilot stdout END ====
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,659 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,663 [wrapper] pilotpid: 5901
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,666 [wrapper] Pilot exit status: 0
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,755 [wrapper] pandaids: 6523359884
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,776 [wrapper] cleanup supervisor_pilot 28678 5902
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,780 [wrapper] Test setup, not cleaning
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,788 [wrapper] apfmon messages muted
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,792 [wrapper] ==== wrapper stdout END ====
2025-02-24 03:32:27 (7516): Guest Log: 2025-02-24 08:32:26,796 [wrapper] ==== wrapper stderr END ====
2025-02-24 03:32:27 (7516): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 03:32:27 (7516): Guest Log:     "exeErrorCode": 0,
2025-02-24 03:32:27 (7516): Guest Log:     "exeErrorDiag": "",
2025-02-24 03:32:27 (7516): Guest Log:     "pilotErrorCode": 0,
2025-02-24 03:32:27 (7516): Guest Log:     "pilotErrorDiag": "",
2025-02-24 03:32:27 (7516): Guest Log:  *** Listing of results directory ***
2025-02-24 03:32:27 (7516): Guest Log: total 323840
2025-02-24 03:32:27 (7516): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 20:36 pilot3.tar.gz
2025-02-24 03:32:27 (7516): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 20:51 queuedata.json
2025-02-24 03:32:27 (7516): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 20:52 runpilot2-wrapper.sh
2025-02-24 03:32:27 (7516): Guest Log: -rwxr-xr-x. 1 atlas atlas     12281 Feb 24 01:18 init_data.xml
2025-02-24 03:32:27 (7516): Guest Log: -rwxr-xr-x. 1 atlas atlas    503560 Feb 24 01:18 input.tar.gz
2025-02-24 03:32:27 (7516): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 01:18 start_atlas.sh
2025-02-24 03:32:27 (7516): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 01:18 EVNT.43078917._002564.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 03:32:27 (7516): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 24 01:18 pandaJob.out
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 01:18 setup.sh.local
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 24 01:19 agis_schedconf.cvmfs.json
2025-02-24 03:32:27 (7516): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 01:19 pilot3
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas 323155239 Feb 24 08:31 HITS.43078919._088848.pool.root.1
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 08:31 pilot_heartbeat.json
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas      1035 Feb 24 08:31 memory_monitor_summary.json
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 08:31 agis_ddmendpoints.agis.ALL.json
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas    397816 Feb 24 08:32 log.43078919._088848.job.log.tgz.1
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas      7713 Feb 24 08:32 heartbeat.json
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas      4470 Feb 24 08:32 pilotlog.txt
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas   1960605 Feb 24 08:32 log.43078919._088848.job.log.1
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 08:32 output.list
2025-02-24 03:32:27 (7516): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 08:32 runtime_log
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas   2375680 Feb 24 08:32 result.tar.gz
2025-02-24 03:32:27 (7516): Guest Log: -rw-r--r--. 1 atlas atlas     10899 Feb 24 08:32 runtime_log.err
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas       649 Feb 24 08:32 gtcMDmSfB66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmJauKDmhLJqkm.diag
2025-02-24 03:32:27 (7516): Guest Log: Looking for outputfile HITS.43078919._088848.pool.root.1
2025-02-24 03:32:27 (7516): Guest Log: HITS file was successfully produced
2025-02-24 03:32:27 (7516): Guest Log: -rw-------. 1 atlas atlas 323155239 Feb 24 08:31 /home/atlas/RunAtlas/HITS.43078919._088848.pool.root.1
2025-02-24 03:32:29 (7516): Guest Log: Successfully finished the ATLAS job!
2025-02-24 03:32:29 (7516): Guest Log: Copying the results back to the shared directory!
2025-02-24 03:32:29 (7516): Guest Log:  *** Contents of shared directory: ***
2025-02-24 03:32:29 (7516): Guest Log: total 650736
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root 340281529 Feb 24 01:17 ATLAS.root_0
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root 323155239 Feb 24 08:32 HITS.pool.root.1
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root     12281 Feb 24 01:17 init_data.xml
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root    503560 Feb 24 01:17 input.tar.gz
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root   2375680 Feb 24 08:32 result.tar.gz
2025-02-24 03:32:29 (7516): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 24 01:17 start_atlas.sh
2025-02-24 03:32:29 (7516): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 03:32:29 (7516): VM Completion File Detected.
2025-02-24 03:32:29 (7516): Powering off VM.
2025-02-24 03:32:30 (7516): Successfully stopped VM.
2025-02-24 03:32:30 (7516): Deregistering VM. (boinc_993fb76772cfe08c, slot#2)
2025-02-24 03:32:30 (7516): Removing network bandwidth throttle group from VM.
2025-02-24 03:32:30 (7516): Removing VM from VirtualBox.
03:32:35 (7516): called boinc_finish(0)

</stderr_txt>
]]>

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