Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:47:51 (1839095): wrapper (7.7.26015): starting
19:47:51 (1839095): wrapper: running run_atlas (--nthreads 8)
[2025-02-23 19:47:51] Arguments: --nthreads 8
[2025-02-23 19:47:51] Threads: 8
[2025-02-23 19:47:51] Checking for CVMFS
[2025-02-23 19:47:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-23 19:47:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-23 19:47:53] Running cvmfs_config stat atlas.cern.ch
[2025-02-23 19:47:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-23 19:47:55] 2.11.5.0 4008888 76062 882556 142993 2 332 25647427 37641217 33707 130560 0 4192522 99.216 8363595 23798 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-23 19:47:55] CVMFS is ok
[2025-02-23 19:47:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-23 19:47:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-23 19:47:55] Further information can be found at the LHC@home message board.
[2025-02-23 19:47:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-23 19:47:55] Checking for apptainer binary...
[2025-02-23 19:47:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-23 19:47:55] Running /usr/bin/apptainer --version
[2025-02-23 19:47:55] apptainer version 1.3.6-1.el9
[2025-02-23 19:47:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-23 19:47:55] c-1-1.aglt2.org
[2025-02-23 19:47:55] apptainer works
[2025-02-23 19:47:55] Set ATHENA_PROC_NUMBER=8
[2025-02-23 19:47:55] Set ATHENA_CORE_NUMBER=8
[2025-02-23 19:47:56] Starting ATLAS job with PandaID=6527526916
[2025-02-23 19:47:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-24 12:32:30]  *** The last 200 lines of the pilot log: ***
[2025-02-24 12:32:30] 2025-02-24 17:31:45,760 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-24 12:32:30] 2025-02-24 17:31:47,787 | INFO     | CPU arch script returned: x86-64-v4
[2025-02-24 12:32:30] 2025-02-24 17:31:47,788 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6527526916/memory_monitor_summary.json (trf name=prmon)
[2025-02-24 12:32:30] 2025-02-24 17:31:47,788 | INFO     | extracted standard info from prmon json
[2025-02-24 12:32:30] 2025-02-24 17:31:47,788 | INFO     | extracted standard memory fields from prmon json
[2025-02-24 12:32:30] 2025-02-24 17:31:47,788 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-24 12:32:30] 2025-02-24 17:31:47,792 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-24 12:32:30] 2025-02-24 17:31:47,792 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-24 12:32:30] 2025-02-24 17:31:47,901 | INFO     | fitting pss+swap vs Time
[2025-02-24 12:32:30] 2025-02-24 17:31:47,908 | INFO     | model: linear, x: [1740358397.0, 1740358458.0, 1740358519.0, 1740358580.0, 1740358641.0, 1740358702.0, 1740358763.0, 1740358824.0, 1740358885.0, 1740358947.0, 1740
[2025-02-24 12:32:30] 2025-02-24 17:31:47,939 | INFO     | sum of square deviations: 293631092090.4689
[2025-02-24 12:32:30] 2025-02-24 17:31:48,084 | INFO     | sum of deviations: 1140862363512.6792
[2025-02-24 12:32:30] 2025-02-24 17:31:48,085 | INFO     | mean x: 1740388318.0875764
[2025-02-24 12:32:30] 2025-02-24 17:31:48,132 | INFO     | mean y: 2100525.236252546
[2025-02-24 12:32:30] 2025-02-24 17:31:48,132 | INFO     | -- intersect: -6759933821.560698
[2025-02-24 12:32:30] 2025-02-24 17:31:48,132 | INFO     | intersect: -6759933821.560698
[2025-02-24 12:32:30] 2025-02-24 17:31:48,134 | INFO     | chi2: 12.516878970693064
[2025-02-24 12:32:30] 2025-02-24 17:31:48,135 | INFO     | model: linear, x: [1740358397.0, 1740358458.0, 1740358519.0, 1740358580.0, 1740358641.0, 1740358702.0, 1740358763.0, 1740358824.0, 1740358885.0, 1740358947.0, 1740
[2025-02-24 12:32:30] 2025-02-24 17:31:48,158 | INFO     | sum of square deviations: 289168696838.4135
[2025-02-24 12:32:30] 2025-02-24 17:31:48,329 | INFO     | monitor loop #3060: job 0:6527526916 is in state 'finished'
[2025-02-24 12:32:30] 2025-02-24 17:31:48,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-24 12:32:30] 2025-02-24 17:31:48,397 | INFO     | sum of deviations: 1355343556139.9832
[2025-02-24 12:32:30] 2025-02-24 17:31:48,397 | INFO     | mean x: 1740388165.5895598
[2025-02-24 12:32:30] 2025-02-24 17:31:48,397 | INFO     | mean y: 2107846.0573183214
[2025-02-24 12:32:30] 2025-02-24 17:31:48,398 | INFO     | -- intersect: -8155150913.981285
[2025-02-24 12:32:30] 2025-02-24 17:31:48,398 | INFO     | intersect: -8155150913.981285
[2025-02-24 12:32:30] 2025-02-24 17:31:48,399 | INFO     | chi2: 9.525221555848885
[2025-02-24 12:32:30] 2025-02-24 17:31:48,399 | INFO     | current chi2=9.525221555848885 (change=23.900985396190418 %)
[2025-02-24 12:32:30] 2025-02-24 17:31:48,399 | INFO     | right removable region: 976
[2025-02-24 12:32:30] 2025-02-24 17:31:48,472 | INFO     | model: linear, x: [1740358702.0, 1740358763.0, 1740358824.0, 1740358885.0, 1740358947.0, 1740359007.0, 1740359068.0, 1740359129.0, 1740359190.0, 1740359251.0, 1740
[2025-02-24 12:32:30] 2025-02-24 17:31:48,474 | INFO     | sum of square deviations: 289168404526.23315
[2025-02-24 12:32:30] 2025-02-24 17:31:48,594 | INFO     | sum of deviations: 894284599972.4338
[2025-02-24 12:32:30] 2025-02-24 17:31:48,595 | INFO     | mean x: 1740388470.5905833
[2025-02-24 12:32:30] 2025-02-24 17:31:48,595 | INFO     | mean y: 2108947.2210849538
[2025-02-24 12:32:30] 2025-02-24 17:31:48,595 | INFO     | -- intersect: -5380230834.224644
[2025-02-24 12:32:30] 2025-02-24 17:31:48,595 | INFO     | intersect: -5380230834.224644
[2025-02-24 12:32:30] 2025-02-24 17:31:48,596 | INFO     | chi2: 9.278270779026453
[2025-02-24 12:32:30] 2025-02-24 17:31:48,597 | INFO     | current chi2=9.278270779026453 (change=25.873927512197458 %)
[2025-02-24 12:32:30] 2025-02-24 17:31:48,679 | INFO     | model: linear, x: [1740359007.0, 1740359068.0, 1740359129.0, 1740359190.0, 1740359251.0, 1740359312.0, 1740359373.0, 1740359434.0, 1740359495.0, 1740359556.0, 1740
[2025-02-24 12:32:30] 2025-02-24 17:31:48,681 | INFO     | sum of square deviations: 284751219027.6665
[2025-02-24 12:32:30] 2025-02-24 17:31:48,909 | INFO     | sum of deviations: 741055089756.3163
[2025-02-24 12:32:30] 2025-02-24 17:31:48,911 | INFO     | mean x: 1740388623.0925925
[2025-02-24 12:32:30] 2025-02-24 17:31:48,930 | INFO     | mean y: 2114236.4742798354
[2025-02-24 12:32:30] 2025-02-24 17:31:48,930 | INFO     | -- intersect: -4527186293.6542425
[2025-02-24 12:32:30] 2025-02-24 17:31:48,930 | INFO     | intersect: -4527186293.6542425
[2025-02-24 12:32:30] 2025-02-24 17:31:48,942 | INFO     | chi2: 8.131387219844012
[2025-02-24 12:32:30] 2025-02-24 17:31:48,942 | INFO     | current chi2=8.131387219844012 (change=12.360962365691824 %)
[2025-02-24 12:32:30] 2025-02-24 17:31:48,942 | INFO     | left removable region: 20
[2025-02-24 12:32:30] 2025-02-24 17:31:48,943 | INFO     | model: linear, x: [1740359617.0, 1740359680.0, 1740359739.0, 1740359800.0, 1740359862.0, 1740359922.0, 1740359983.0, 1740360044.0, 1740360106.0, 1740360167.0, 1740
[2025-02-24 12:32:30] 2025-02-24 17:31:48,944 | INFO     | sum of square deviations: 270919007374.3599
[2025-02-24 12:32:30] 2025-02-24 17:31:49,046 | INFO     | sum of deviations: 637182896299.6895
[2025-02-24 12:32:30] 2025-02-24 17:31:49,046 | INFO     | mean x: 1740388745.1004183
[2025-02-24 12:32:30] 2025-02-24 17:31:49,046 | INFO     | mean y: 2133075.5240585776
[2025-02-24 12:32:30] 2025-02-24 17:31:49,046 | INFO     | -- intersect: -4091141708.101989
[2025-02-24 12:32:30] 2025-02-24 17:31:49,046 | INFO     | intersect: -4091141708.101989
[2025-02-24 12:32:30] 2025-02-24 17:31:49,047 | INFO     | chi2: 2.4814400172099806
[2025-02-24 12:32:30] 2025-02-24 17:31:49,072 | INFO     | -- intersect: -4091141708.101989
[2025-02-24 12:32:30] 2025-02-24 17:31:49,073 | INFO     | current memory leak: 2.35 B/s (using 956 data points, chi2=2.48)
[2025-02-24 12:32:30] 2025-02-24 17:31:49,074 | INFO     | ..............................
[2025-02-24 12:32:30] 2025-02-24 17:31:49,074 | INFO     | . Timing measurements:
[2025-02-24 12:32:30] 2025-02-24 17:31:49,074 | INFO     | . get job = 0 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,074 | INFO     | . initial setup = 10 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | . payload setup = 71 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | . stage-in = 0 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | . payload execution = 59887 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | . stage-out = 7 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | . log creation = 2 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,075 | INFO     | ..............................
[2025-02-24 12:32:30] 2025-02-24 17:31:49,343 | INFO     | 
[2025-02-24 12:32:30] 2025-02-24 17:31:49,343 | INFO     | job summary report
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | --------------------------------------------------
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | PanDA job id: 6527526916
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | task id: 43205075
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | errors: (none)
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | pilot state: finished 
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | transexitcode: 0
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | exeerrorcode: 0
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | exeerrordiag: 
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | exitcode: 0
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | exitmsg: OK
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | cpuconsumptiontime: 102160 s
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | nevents: 400
[2025-02-24 12:32:30] 2025-02-24 17:31:49,344 | INFO     | neventsw: 0
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | pid: 1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | pgrp: 1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | corecount: 8
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | event service: False
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | sizes: {0: 2383197, 1: 2383225, 2: 2383396, 13: 2383424, 24: 2383480, 35: 2383508, 46: 2383664, 54: 2383898, 58: 2383926, 59965: 2433730, 59974: 2442671, 59978: 24
[2025-02-24 12:32:30] 2025-02-24 17:31:49,345 | INFO     | --------------------------------------------------
[2025-02-24 12:32:30] 2025-02-24 17:31:49,349 | INFO     | 
[2025-02-24 12:32:30] 2025-02-24 17:31:49,349 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,438 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,439 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,439 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,439 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,439 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,439 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,459 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-24 12:32:30] 2025-02-24 17:31:49,460 | INFO     | job 6527526916 has completed (purged errors)
[2025-02-24 12:32:30] 2025-02-24 17:31:49,461 | INFO     | overall cleanup function is called
[2025-02-24 12:32:30] 2025-02-24 17:31:50,503 | INFO     | --- collectZombieJob: --- 10, [1893869]
[2025-02-24 12:32:30] 2025-02-24 17:31:50,503 | INFO     | zombie collector waiting for pid 1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:50,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-24 12:32:30] 2025-02-24 17:31:50,504 | INFO     | collected zombie processes
[2025-02-24 12:32:30] 2025-02-24 17:31:50,504 | INFO     | will attempt to kill all subprocesses of pid=1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:53,056 | INFO     | process IDs to be killed: [1893869] (in reverse order)
[2025-02-24 12:32:30] 2025-02-24 17:31:53,558 | WARNING  | found no corresponding commands to process id(s)
[2025-02-24 12:32:30] 2025-02-24 17:31:53,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-24 12:32:30] 2025-02-24 17:31:54,065 | INFO     | did not find any defunct processes belonging to 1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:54,875 | INFO     | did not find any defunct processes belonging to 1893869
[2025-02-24 12:32:30] 2025-02-24 17:31:54,875 | INFO     | ready for new job
[2025-02-24 12:32:30] 2025-02-24 17:31:54,875 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-24 12:32:30] 2025-02-24 17:31:54,966 | INFO     | **************************************
[2025-02-24 12:32:30] 2025-02-24 17:31:54,967 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-24 12:32:30] 2025-02-24 17:31:54,967 | INFO     | **************************************
[2025-02-24 12:32:30] 2025-02-24 17:31:54,967 | INFO     | 
[2025-02-24 12:32:30] 2025-02-24 17:31:55,248 | INFO     | architecture information:
[2025-02-24 12:32:30] 2025-02-24 17:31:55,371 | INFO     | executing command: cat /etc/os-release
[2025-02-24 12:32:30] 2025-02-24 17:31:55,569 | INFO     | cat /etc/os-release:
[2025-02-24 12:32:30] NAME="CentOS Linux"
[2025-02-24 12:32:30] VERSION="7 (Core)"
[2025-02-24 12:32:30] ID="centos"
[2025-02-24 12:32:30] ID_LIKE="rhel fedora"
[2025-02-24 12:32:30] VERSION_ID="7"
[2025-02-24 12:32:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-24 12:32:30] ANSI_COLOR="0;31"
[2025-02-24 12:32:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-24 12:32:30] HOME_URL="https://www.centos.org/"
[2025-02-24 12:32:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-24 12:32:30] 
[2025-02-24 12:32:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-24 12:32:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-24 12:32:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-24 12:32:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-24 12:32:30] 
[2025-02-24 12:32:30] 2025-02-24 17:31:55,570 | INFO     | **************************************
[2025-02-24 12:32:30] 2025-02-24 17:31:56,085 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-02-24 12:32:30] 2025-02-24 17:31:56,227 | INFO     | sufficient remaining disk space (73773613056 B)
[2025-02-24 12:32:30] 2025-02-24 17:31:56,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-24 12:32:30] 2025-02-24 17:31:56,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-24 12:32:30] 2025-02-24 17:31:56,303 | INFO     | all data control threads have been joined
[2025-02-24 12:32:30] 2025-02-24 17:31:56,303 | INFO     | all job control threads have been joined
[2025-02-24 12:32:30] 2025-02-24 17:31:56,587 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-24 12:32:30] 2025-02-24 17:31:56,918 | INFO     | all payload control threads have been joined
[2025-02-24 12:32:30] 2025-02-24 17:31:57,103 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-24 12:32:30] 2025-02-24 17:31:57,103 | INFO     | aborting loop
[2025-02-24 12:32:30] 2025-02-24 17:31:57,233 | INFO     | [job] retrieve thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,257 | INFO     | [payload] validate_pre thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,345 | INFO     | [job] control thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,346 | INFO     | [data] control thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,514 | INFO     | [payload] execute_payloads thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,544 | INFO     | [data] copytool_in thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,592 | INFO     | [job] create_data_payload thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,638 | INFO     | [job] validate thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-24 12:32:30] 2025-02-24 17:31:57,905 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:57,924 | INFO     | [payload] control thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:58,162 | INFO     | [job] job monitor thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:58,489 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-24 12:32:30] 2025-02-24 17:31:58,618 | INFO     | [data] copytool_out thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:58,639 | INFO     | [payload] validate_post thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:58,868 | INFO     | [payload] failed_post thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:31:59,499 | INFO     | [job] queue monitor thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:32:00,053 | INFO     | PID=1864435 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-02-24 12:32:30] 2025-02-24 17:32:00,054 | INFO     | .. there are 83 such processes running
[2025-02-24 12:32:30] 2025-02-24 17:32:00,054 | INFO     | found 0 job(s) in 20 queues
[2025-02-24 12:32:30] 2025-02-24 17:32:00,054 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-24 12:32:30] 2025-02-24 17:32:00,079 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-24 12:32:30] 2025-02-24 17:32:01,799 | INFO     | [data] queue_monitor thread has finished
[2025-02-24 12:32:30] 2025-02-24 17:32:02,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140039327352640)>', '<ExcThread(monitor, started 140038977332992)>']
[2025-02-24 12:32:30] 2025-02-24 17:32:03,113 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-24 12:32:30] 2025-02-24 17:32:03,113 | INFO     | [monitor] control thread has ended
[2025-02-24 12:32:30] 2025-02-24 17:32:07,934 | INFO     | all workflow threads have been joined
[2025-02-24 12:32:30] 2025-02-24 17:32:07,934 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-24 12:32:30] 2025-02-24 17:32:07,935 | INFO     | traces error code: 0
[2025-02-24 12:32:30] 2025-02-24 17:32:07,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-24 12:32:30] 2025-02-24 17:32:09,358 [wrapper] ==== pilot stdout END ====
[2025-02-24 12:32:30] 2025-02-24 17:32:09,411 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-24 12:32:30] 2025-02-24 17:32:09,459 [wrapper] pilotpid: 1864435
[2025-02-24 12:32:30] 2025-02-24 17:32:09,489 [wrapper] Pilot exit status: 0
[2025-02-24 12:32:30] 2025-02-24 17:32:09,599 [wrapper] pandaids: 6527526916
[2025-02-24 12:32:30] 2025-02-24 17:32:10,002 [wrapper] cleanup supervisor_pilot 2883037 1864437
[2025-02-24 12:32:30] 2025-02-24 17:32:10,006 [wrapper] Test setup, not cleaning
[2025-02-24 12:32:30] 2025-02-24 17:32:10,052 [wrapper] apfmon messages muted
[2025-02-24 12:32:30] 2025-02-24 17:32:10,121 [wrapper] ==== wrapper stdout END ====
[2025-02-24 12:32:30] 2025-02-24 17:32:10,157 [wrapper] ==== wrapper stderr END ====
[2025-02-24 12:32:30]  *** Error codes and diagnostics ***
[2025-02-24 12:32:30]     "exeErrorCode": 0,
[2025-02-24 12:32:30]     "exeErrorDiag": "",
[2025-02-24 12:32:30]     "pilotErrorCode": 0,
[2025-02-24 12:32:30]     "pilotErrorDiag": "",
[2025-02-24 12:32:30]  *** Listing of results directory ***
[2025-02-24 12:32:30] total 683332
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas    491065 Feb 23 14:54 pilot3.tar.gz
[2025-02-24 12:32:30] -rwx------. 1 boincer umatlas     35865 Feb 23 15:00 runpilot2-wrapper.sh
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas      5118 Feb 23 15:00 queuedata.json
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas       100 Feb 23 19:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-24 12:32:30] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 23 19:47 run_atlas
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas       105 Feb 23 19:47 job.xml
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas 346539699 Feb 23 19:47 EVNT.43092757._000936.pool.root.1
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas    503557 Feb 23 19:47 input.tar.gz
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas     17569 Feb 23 19:47 start_atlas.sh
[2025-02-24 12:32:30] drwxrwx--x. 2 boincer umatlas      4096 Feb 23 19:47 shared
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas         0 Feb 23 19:47 boinc_lockfile
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas      2556 Feb 23 19:47 pandaJob.out
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas       467 Feb 23 19:47 setup.sh.local
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas    987744 Feb 23 19:49 agis_schedconf.cvmfs.json
[2025-02-24 12:32:30] drwx------. 4 boincer umatlas      4096 Feb 23 19:49 pilot3
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas 335149070 Feb 24 12:26 HITS.43205075._060637.pool.root.1
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas       533 Feb 24 12:27 boinc_task_state.xml
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas      6839 Feb 24 12:30 init_data.xml
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas      1039 Feb 24 12:30 memory_monitor_summary.json
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas   1582569 Feb 24 12:30 agis_ddmendpoints.agis.ALL.json
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas    928266 Feb 24 12:30 log.43205075._060637.job.log.tgz.1
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas        95 Feb 24 12:31 pilot_heartbeat.json
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas      7736 Feb 24 12:31 heartbeat.json
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas      4610 Feb 24 12:32 pilotlog.txt
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas   6188135 Feb 24 12:32 log.43205075._060637.job.log.1
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas       357 Feb 24 12:32 output.list
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas       620 Feb 24 12:32 runtime_log
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas   7137280 Feb 24 12:32 result.tar.gz
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas     11404 Feb 24 12:32 runtime_log.err
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas       657 Feb 24 12:32 6yMLDmuKX66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmE8eKDm7AQzfn.diag
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas        29 Feb 24 12:32 wrapper_checkpoint.txt
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas      8192 Feb 24 12:32 boinc_mmap_file
[2025-02-24 12:32:30] -rw-r--r--. 1 boincer umatlas     21833 Feb 24 12:32 stderr.txt
[2025-02-24 12:32:30] HITS file was successfully produced:
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas 335149070 Feb 24 12:26 shared/HITS.pool.root.1
[2025-02-24 12:32:30]  *** Contents of shared directory: ***
[2025-02-24 12:32:30] total 673208
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas 346539699 Feb 23 19:47 ATLAS.root_0
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas    503557 Feb 23 19:47 input.tar.gz
[2025-02-24 12:32:30] -rw-r--r--. 2 boincer umatlas     17569 Feb 23 19:47 start_atlas.sh
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas 335149070 Feb 24 12:26 HITS.pool.root.1
[2025-02-24 12:32:30] -rw-------. 1 boincer umatlas   7137280 Feb 24 12:32 result.tar.gz
12:32:32 (1839095): run_atlas exited; CPU time 102525.069407
12:32:32 (1839095): called boinc_finish(0)

</stderr_txt>
]]>

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