Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 00:01:03 (5608): Detected: vboxwrapper 26206
2025-02-24 00:01:03 (5608): Detected: BOINC client v8.0.4
2025-02-24 00:01:04 (5608): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-24 00:01:05 (5608): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 00:01:05 (5608): Create VM. (boinc_318477182996b2ae, slot#1)
2025-02-24 00:01:06 (5608): Setting Memory Size for VM. (4400MB)
2025-02-24 00:01:06 (5608): Setting CPU Count for VM. (4)
2025-02-24 00:01:06 (5608): Setting Chipset Options for VM.
2025-02-24 00:01:07 (5608): Setting Graphics Controller Options for VM.
2025-02-24 00:01:07 (5608): Setting Boot Options for VM.
2025-02-24 00:01:07 (5608): Setting Network Configuration for NAT.
2025-02-24 00:01:07 (5608): Enabling VM Network Access.
2025-02-24 00:01:08 (5608): Disabling USB Support for VM.
2025-02-24 00:01:08 (5608): Disabling COM Port Support for VM.
2025-02-24 00:01:08 (5608): Disabling LPT Port Support for VM.
2025-02-24 00:01:09 (5608): Disabling Audio Support for VM.
2025-02-24 00:01:09 (5608): Disabling Clipboard Support for VM.
2025-02-24 00:01:09 (5608): Disabling Drag and Drop Support for VM.
2025-02-24 00:01:09 (5608): Adding storage controller(s) to VM.
2025-02-24 00:01:10 (5608): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 00:01:13 (5608): Adding VirtualBox Guest Additions to VM.
2025-02-24 00:01:13 (5608): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 00:01:14 (5608): forwarding host port 57044 to guest port 80
2025-02-24 00:01:14 (5608): Enabling remote desktop for VM.
2025-02-24 00:01:14 (5608): Required extension pack not installed, remote desktop not enabled.
2025-02-24 00:01:14 (5608): Enabling shared directory for VM.
2025-02-24 00:01:15 (5608): Starting VM using VBoxManage interface. (boinc_318477182996b2ae, slot#1)
2025-02-24 00:01:24 (5608): Successfully started VM. (PID = '8572')
2025-02-24 00:01:24 (5608): Reporting VM Process ID to BOINC.
2025-02-24 00:01:24 (5608): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-24 00:01:24 (5608): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 00:01:24 (5608): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 00:01:24 (5608): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 00:01:24 (5608): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 00:01:24 (5608): Detected: Web Application Enabled (http://localhost:57044)
2025-02-24 00:01:24 (5608): Preference change detected
2025-02-24 00:01:24 (5608): Setting CPU throttle for VM. (100%)
2025-02-24 00:01:24 (5608): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 00:01:26 (5608): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 00:01:26 (5608): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 00:01:28 (5608): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 00:01:28 (5608): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 00:01:28 (5608): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 00:01:36 (5608): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 00:01:36 (5608): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 00:01:43 (5608): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000248 main     Log opened 2025-02-24T00:01:40.926100000Z
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000387 main     OS Product: Linux
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000430 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000466 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000504 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000505 main     Process ID: 1268
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.000506 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 00:01:43 (5608): Guest Log: 00:00:00.001583 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 00:01:43 (5608): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 00:01:43 (5608): Guest Log: [INFO] Mounting shared directory
2025-02-24 00:01:43 (5608): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 00:01:45 (5608): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 00:01:45 (5608): Guest Log: [INFO] Detected branch: prod
2025-02-24 00:01:45 (5608): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 00:01:45 (5608): Guest Log: Copying input files
2025-02-24 00:01:48 (5608): Guest Log: Copied input files into RunAtlas.
2025-02-24 00:01:48 (5608): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 00:01:48 (5608): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 00:01:48 (5608): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 00:01:48 (5608): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 00:01:53 (5608): Guest Log: 00:00:10.005235 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 180 581 000ns (GuestNow=1 740 351 712 749 220 000 ns GuestLast=1 740 355 300 929 801 000 ns fSetTimeLastLoop=true )
2025-02-24 00:01:57 (5608): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 00:01:57 (5608): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 00:01:57 (5608): Guest Log: 2.6.3.0 1542 0 29912 142990 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 00:01:57 (5608): Guest Log: copied the webapp to /var/www
2025-02-24 00:01:59 (5608): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-24 00:01:59 (5608): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-24 00:01:59 (5608): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 00:01:59 (5608): Guest Log:  *** Starting ATLAS job. (PandaID=6523758831 taskID=43205075) ***
2025-02-24 00:09:43 (5608): Guest Log:  *** Job finished ***
2025-02-24 00:09:43 (5608): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:29,506 | INFO     | [job] create_data_payload thread has finished
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:29,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:33,985 | INFO     | [data] queue_monitor thread has finished
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:35,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139891652552512)>', '<ExcThread(monitor, started 139891203614464)>']
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:36,509 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:36,510 | INFO     | [monitor] control thread has ended
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,806 | INFO     | all workflow threads have been joined
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,808 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,809 | INFO     | traces error code: 0
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,810 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,980 [wrapper] ==== pilot stdout END ====
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,988 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:40,996 [wrapper] pilotpid: 5873
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,004 [wrapper] Pilot exit status: 0
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,088 [wrapper] pandaids: 6523758831
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,133 [wrapper] cleanup supervisor_pilot  5879 5874
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,141 [wrapper] Test setup, not cleaning
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,156 [wrapper] apfmon messages muted
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,164 [wrapper] ==== wrapper stdout END ====
2025-02-24 00:09:43 (5608): Guest Log: 2025-02-23 23:09:41,172 [wrapper] ==== wrapper stderr END ====
2025-02-24 00:09:43 (5608): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 00:09:43 (5608): Guest Log:     "exeErrorCode": 65,
2025-02-24 00:09:43 (5608): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-02-24 00:09:43 (5608): Guest Log:     "pilotErrorCode": 1305,
2025-02-24 00:09:43 (5608): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 23:06:10,491 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-02-24 00:09:43 (5608): Guest Log:  *** Listing of results directory ***
2025-02-24 00:09:43 (5608): Guest Log: total 3988
2025-02-24 00:09:43 (5608): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 23 05:04 pilot3.tar.gz
2025-02-24 00:09:43 (5608): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 23 05:17 runpilot2-wrapper.sh
2025-02-24 00:09:43 (5608): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 23 05:17 queuedata.json
2025-02-24 00:09:43 (5608): Guest Log: -rwxr-xr-x. 1 atlas atlas    8703 Feb 23 23:01 init_data.xml
2025-02-24 00:09:43 (5608): Guest Log: -rwxr-xr-x. 1 atlas atlas  503559 Feb 23 23:01 input.tar.gz
2025-02-24 00:09:43 (5608): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 23 23:01 start_atlas.sh
2025-02-24 00:09:43 (5608): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 23:01 EVNT.43092757._001018.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 00:09:43 (5608): Guest Log: -rw-r--r--. 1 atlas atlas    2555 Feb 23 23:01 pandaJob.out
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 23:02 setup.sh.local
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas  987744 Feb 23 23:02 agis_schedconf.cvmfs.json
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 23:02 agis_ddmendpoints.agis.ALL.json
2025-02-24 00:09:43 (5608): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 23:02 pilot3
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas   46321 Feb 23 23:07 log.43205075._059770.job.log.tgz.1
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 23:08 pilot_heartbeat.json
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas    8035 Feb 23 23:09 heartbeat.json
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas    4461 Feb 23 23:09 pilotlog.txt
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas  128512 Feb 23 23:09 log.43205075._059770.job.log.1
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 23:09 output.list
2025-02-24 00:09:43 (5608): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 23:09 runtime_log
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas  194560 Feb 23 23:09 result.tar.gz
2025-02-24 00:09:43 (5608): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Feb 23 23:09 runtime_log.err
2025-02-24 00:09:43 (5608): Guest Log: -rw-------. 1 atlas atlas     645 Feb 23 23:09 Q1YKDmhXJ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmA4uKDmzTvvEn.diag
2025-02-24 00:09:43 (5608): Guest Log: Looking for outputfile HITS.43205075._059770.pool.root.1
2025-02-24 00:09:43 (5608): Guest Log: No HITS file was produced
2025-02-24 00:09:43 (5608): Guest Log: Successfully finished the ATLAS job!
2025-02-24 00:09:43 (5608): Guest Log: Copying the results back to the shared directory!
2025-02-24 00:09:43 (5608): Guest Log:  *** Contents of shared directory: ***
2025-02-24 00:09:43 (5608): Guest Log: total 334996
2025-02-24 00:09:43 (5608): Guest Log: -rwxrwxrwx. 1 root root 342302163 Feb 23 23:01 ATLAS.root_0
2025-02-24 00:09:43 (5608): Guest Log: -rwxrwxrwx. 1 root root      8703 Feb 23 23:01 init_data.xml
2025-02-24 00:09:43 (5608): Guest Log: -rwxrwxrwx. 1 root root    503559 Feb 23 23:00 input.tar.gz
2025-02-24 00:09:43 (5608): Guest Log: -rwxrwxrwx. 1 root root    194560 Feb 23 23:09 result.tar.gz
2025-02-24 00:09:43 (5608): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 23:00 start_atlas.sh
2025-02-24 00:09:43 (5608): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 00:09:43 (5608): VM Completion File Detected.
2025-02-24 00:09:43 (5608): Powering off VM.
2025-02-24 00:09:47 (5608): Successfully stopped VM.
2025-02-24 00:09:47 (5608): Deregistering VM. (boinc_318477182996b2ae, slot#1)
2025-02-24 00:09:48 (5608): Removing network bandwidth throttle group from VM.
2025-02-24 00:09:48 (5608): Removing VM from VirtualBox.
00:09:54 (5608): called boinc_finish(0)

</stderr_txt>
]]>

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