Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 09:04:26 (1196): Detected: vboxwrapper 26206
2025-02-24 09:04:26 (1196): Detected: BOINC client v8.0.2
2025-02-24 09:04:28 (1196): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-24 09:04:29 (1196): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 09:04:29 (1196): Create VM. (boinc_1acc0a616b4307f6, slot#3)
2025-02-24 09:04:31 (1196): Setting Memory Size for VM. (4300MB)
2025-02-24 09:04:31 (1196): Setting CPU Count for VM. (3)
2025-02-24 09:04:31 (1196): Setting Chipset Options for VM.
2025-02-24 09:04:32 (1196): Setting Graphics Controller Options for VM.
2025-02-24 09:04:32 (1196): Setting Boot Options for VM.
2025-02-24 09:04:33 (1196): Setting Network Configuration for NAT.
2025-02-24 09:04:33 (1196): Enabling VM Network Access.
2025-02-24 09:04:33 (1196): Disabling USB Support for VM.
2025-02-24 09:04:34 (1196): Disabling COM Port Support for VM.
2025-02-24 09:04:34 (1196): Disabling LPT Port Support for VM.
2025-02-24 09:04:34 (1196): Disabling Audio Support for VM.
2025-02-24 09:04:35 (1196): Disabling Clipboard Support for VM.
2025-02-24 09:04:35 (1196): Disabling Drag and Drop Support for VM.
2025-02-24 09:04:36 (1196): Adding storage controller(s) to VM.
2025-02-24 09:04:36 (1196): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 09:04:44 (1196): Adding VirtualBox Guest Additions to VM.
2025-02-24 09:04:45 (1196): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 09:04:47 (1196): forwarding host port 62761 to guest port 80
2025-02-24 09:04:48 (1196): Enabling remote desktop for VM.
2025-02-24 09:04:48 (1196): Required extension pack not installed, remote desktop not enabled.
2025-02-24 09:04:48 (1196): Enabling shared directory for VM.
2025-02-24 09:04:50 (1196): Starting VM using VBoxManage interface. (boinc_1acc0a616b4307f6, slot#3)
2025-02-24 09:05:04 (1196): Successfully started VM. (PID = '17264')
2025-02-24 09:05:04 (1196): Reporting VM Process ID to BOINC.
2025-02-24 09:05:04 (1196): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-24 09:05:04 (1196): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 09:05:04 (1196): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 09:05:04 (1196): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 09:05:04 (1196): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 09:05:04 (1196): Detected: Web Application Enabled (http://localhost:62761)
2025-02-24 09:05:04 (1196): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 09:05:04 (1196): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 09:05:06 (1196): Preference change detected
2025-02-24 09:05:06 (1196): Setting CPU throttle for VM. (100%)
2025-02-24 09:05:10 (1196): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 09:05:13 (1196): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 09:05:13 (1196): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 09:05:13 (1196): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 09:05:23 (1196): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 09:05:23 (1196): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 09:05:46 (1196): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.000431 main     Log opened 2025-02-24T09:05:39.850842000Z
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.000818 main     OS Product: Linux
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.000948 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.001031 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.001114 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.001117 main     Process ID: 1293
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.001119 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 09:05:46 (1196): Guest Log: 00:00:00.003042 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 09:05:46 (1196): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 09:05:46 (1196): Guest Log: [INFO] Mounting shared directory
2025-02-24 09:05:46 (1196): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 09:05:52 (1196): Guest Log: 00:00:10.020243 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 588 658 787 000ns (GuestNow=1 740 348 351 198 349 000 ns GuestLast=1 740 387 939 857 136 000 ns fSetTimeLastLoop=true )
2025-02-24 09:05:52 (1196): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 09:05:52 (1196): Guest Log: [INFO] Detected branch: prod
2025-02-24 09:05:53 (1196): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 09:05:53 (1196): Guest Log: Copying input files
2025-02-24 09:05:59 (1196): Guest Log: Copied input files into RunAtlas.
2025-02-24 09:05:59 (1196): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 09:05:59 (1196): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 09:05:59 (1196): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 09:05:59 (1196): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 09:06:14 (1196): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 09:06:17 (1196): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 09:06:17 (1196): Guest Log: 2.6.3.0 1571 0 32200 142988 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 09:06:19 (1196): Guest Log: copied the webapp to /var/www
2025-02-24 09:06:19 (1196): Guest Log: ATHENA_PROC_NUMBER=3
2025-02-24 09:06:19 (1196): Guest Log: ATHENA_CORE_NUMBER=3
2025-02-24 09:06:19 (1196): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 09:06:19 (1196): Guest Log:  *** Starting ATLAS job. (PandaID=6523512678 taskID=43205075) ***
2025-02-24 09:44:35 (1196): Guest Log:  *** Job finished ***
2025-02-24 09:44:35 (1196): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:18,845 | INFO     | [data] copytool_out thread has finished
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:18,880 | INFO     | [job] queue monitor thread has finished
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:22,721 | INFO     | [data] queue_monitor thread has finished
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:23,793 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611142137664)>', '<ExcThread(monitor, started 140610560313088)>']
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:24,244 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:24,246 | INFO     | [monitor] control thread has ended
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:28,800 | INFO     | all workflow threads have been joined
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:28,802 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:28,806 | INFO     | traces error code: 0
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:28,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:29,681 [wrapper] ==== pilot stdout END ====
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:29,708 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:29,831 [wrapper] pilotpid: 5914
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:29,865 [wrapper] Pilot exit status: 0
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,045 [wrapper] pandaids: 6523512678
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,239 [wrapper] cleanup supervisor_pilot 19279 5915
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,311 [wrapper] Test setup, not cleaning
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,390 [wrapper] apfmon messages muted
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,414 [wrapper] ==== wrapper stdout END ====
2025-02-24 09:44:35 (1196): Guest Log: 2025-02-23 22:44:30,448 [wrapper] ==== wrapper stderr END ====
2025-02-24 09:44:35 (1196): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 09:44:35 (1196): Guest Log:     "exeErrorCode": 65,
2025-02-24 09:44:35 (1196): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitialize(): standard std::exception is caught\"",
2025-02-24 09:44:35 (1196): Guest Log:     "pilotErrorCode": 1305,
2025-02-24 09:44:35 (1196): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 22:43:18,871 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitia",
2025-02-24 09:44:35 (1196): Guest Log:  *** Listing of results directory ***
2025-02-24 09:44:35 (1196): Guest Log: total 4216
2025-02-24 09:44:35 (1196): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 23 01:31 pilot3.tar.gz
2025-02-24 09:44:35 (1196): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 23 01:46 runpilot2-wrapper.sh
2025-02-24 09:44:35 (1196): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 23 01:46 queuedata.json
2025-02-24 09:44:35 (1196): Guest Log: -rwxr-xr-x. 1 atlas atlas    8411 Feb 23 22:05 init_data.xml
2025-02-24 09:44:35 (1196): Guest Log: -rwxr-xr-x. 1 atlas atlas  503554 Feb 23 22:05 input.tar.gz
2025-02-24 09:44:35 (1196): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 23 22:05 start_atlas.sh
2025-02-24 09:44:35 (1196): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 22:05 EVNT.43092757._001068.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 09:44:35 (1196): Guest Log: -rw-r--r--. 1 atlas atlas    2555 Feb 23 22:06 pandaJob.out
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 22:06 setup.sh.local
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas  987744 Feb 23 22:09 agis_schedconf.cvmfs.json
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 22:09 agis_ddmendpoints.agis.ALL.json
2025-02-24 09:44:35 (1196): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 22:10 pilot3
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas    1018 Feb 23 22:43 memory_monitor_summary.json
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas   65860 Feb 23 22:43 log.43205075._059563.job.log.tgz.1
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 22:44 pilot_heartbeat.json
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas   10071 Feb 23 22:44 heartbeat.json
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas    4398 Feb 23 22:44 pilotlog.txt
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas  223894 Feb 23 22:44 log.43205075._059563.job.log.1
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 22:44 output.list
2025-02-24 09:44:35 (1196): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 22:44 runtime_log
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas  307200 Feb 23 22:44 result.tar.gz
2025-02-24 09:44:35 (1196): Guest Log: -rw-r--r--. 1 atlas atlas   10782 Feb 23 22:44 runtime_log.err
2025-02-24 09:44:35 (1196): Guest Log: -rw-------. 1 atlas atlas     648 Feb 23 22:44 2aCODm9FG66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmMsuKDmnnj0cn.diag
2025-02-24 09:44:35 (1196): Guest Log: Looking for outputfile HITS.43205075._059563.pool.root.1
2025-02-24 09:44:35 (1196): Guest Log: No HITS file was produced
2025-02-24 09:44:35 (1196): Guest Log: Successfully finished the ATLAS job!
2025-02-24 09:44:35 (1196): Guest Log: Copying the results back to the shared directory!
2025-02-24 09:44:35 (1196): Guest Log:  *** Contents of shared directory: ***
2025-02-24 09:44:35 (1196): Guest Log: total 337388
2025-02-24 09:44:35 (1196): Guest Log: -rwxrwxrwx. 1 root root 344638773 Feb 23 22:04 ATLAS.root_0
2025-02-24 09:44:35 (1196): Guest Log: -rwxrwxrwx. 1 root root      8411 Feb 23 22:04 init_data.xml
2025-02-24 09:44:35 (1196): Guest Log: -rwxrwxrwx. 1 root root    503554 Feb 23 22:00 input.tar.gz
2025-02-24 09:44:35 (1196): Guest Log: -rwxrwxrwx. 1 root root    307200 Feb 23 22:44 result.tar.gz
2025-02-24 09:44:35 (1196): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 22:00 start_atlas.sh
2025-02-24 09:44:35 (1196): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 09:44:36 (1196): VM Completion File Detected.
2025-02-24 09:44:36 (1196): Powering off VM.
2025-02-24 09:44:43 (1196): Successfully stopped VM.
2025-02-24 09:44:43 (1196): Deregistering VM. (boinc_1acc0a616b4307f6, slot#3)
2025-02-24 09:44:44 (1196): Removing network bandwidth throttle group from VM.
2025-02-24 09:44:44 (1196): Removing VM from VirtualBox.
09:44:50 (1196): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN