Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 10:20:59 (8712): Detected: vboxwrapper 26206
2025-02-24 10:20:59 (8712): Detected: BOINC client v8.0.2
2025-02-24 10:21:00 (8712): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-02-24 10:21:00 (8712): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 10:21:00 (8712): Create VM. (boinc_f67d671e6c8db47c, slot#0)
2025-02-24 10:21:01 (8712): Setting Memory Size for VM. (4400MB)
2025-02-24 10:21:01 (8712): Setting CPU Count for VM. (4)
2025-02-24 10:21:02 (8712): Setting Chipset Options for VM.
2025-02-24 10:21:02 (8712): Setting Graphics Controller Options for VM.
2025-02-24 10:21:02 (8712): Setting Boot Options for VM.
2025-02-24 10:21:02 (8712): Setting Network Configuration for NAT.
2025-02-24 10:21:03 (8712): Enabling VM Network Access.
2025-02-24 10:21:03 (8712): Disabling USB Support for VM.
2025-02-24 10:21:03 (8712): Disabling COM Port Support for VM.
2025-02-24 10:21:03 (8712): Disabling LPT Port Support for VM.
2025-02-24 10:21:04 (8712): Disabling Audio Support for VM.
2025-02-24 10:21:04 (8712): Disabling Clipboard Support for VM.
2025-02-24 10:21:04 (8712): Disabling Drag and Drop Support for VM.
2025-02-24 10:21:04 (8712): Adding storage controller(s) to VM.
2025-02-24 10:21:05 (8712): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 10:21:08 (8712): Adding VirtualBox Guest Additions to VM.
2025-02-24 10:21:08 (8712): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 10:21:08 (8712): forwarding host port 57949 to guest port 80
2025-02-24 10:21:09 (8712): Enabling remote desktop for VM.
2025-02-24 10:21:09 (8712): Required extension pack not installed, remote desktop not enabled.
2025-02-24 10:21:09 (8712): Enabling shared directory for VM.
2025-02-24 10:21:09 (8712): Starting VM using VBoxManage interface. (boinc_f67d671e6c8db47c, slot#0)
2025-02-24 10:21:16 (8712): Successfully started VM. (PID = '12392')
2025-02-24 10:21:16 (8712): Reporting VM Process ID to BOINC.
2025-02-24 10:21:16 (8712): Guest Log: BIOS: VirtualBox 7.1.0
2025-02-24 10:21:16 (8712): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 10:21:16 (8712): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 10:21:16 (8712): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 10:21:16 (8712): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 10:21:16 (8712): Detected: Web Application Enabled (http://localhost:57949)
2025-02-24 10:21:16 (8712): Preference change detected
2025-02-24 10:21:16 (8712): Setting CPU throttle for VM. (100%)
2025-02-24 10:21:16 (8712): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 10:21:18 (8712): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 10:21:18 (8712): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 10:21:20 (8712): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 10:21:20 (8712): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 10:21:20 (8712): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 10:21:25 (8712): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 10:21:25 (8712): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 10:21:31 (8712): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000155 main     Log opened 2025-02-24T10:21:29.451560000Z
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000252 main     OS Product: Linux
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000286 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000314 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000343 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000344 main     Process ID: 1306
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.000344 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 10:21:31 (8712): Guest Log: 00:00:00.001303 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 10:21:31 (8712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 10:21:31 (8712): Guest Log: [INFO] Mounting shared directory
2025-02-24 10:21:31 (8712): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 10:21:41 (8712): Guest Log: 00:00:10.010921 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 611 855 667 000ns (GuestNow=1 740 414 101 311 442 000 ns GuestLast=1 740 392 489 455 775 000 ns fSetTimeLastLoop=true )
2025-02-24 10:22:05 (8712): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 10:22:05 (8712): Guest Log: [INFO] Detected branch: prod
2025-02-24 10:22:08 (8712): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 10:22:08 (8712): Guest Log: Copying input files
2025-02-24 10:22:09 (8712): Guest Log: Copied input files into RunAtlas.
2025-02-24 10:22:09 (8712): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 10:22:09 (8712): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 10:22:09 (8712): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 10:22:09 (8712): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 10:22:28 (8712): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 10:22:30 (8712): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 10:22:30 (8712): Guest Log: 2.6.3.0 1614 0 30112 143009 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 10:22:30 (8712): Guest Log: copied the webapp to /var/www
2025-02-24 10:22:30 (8712): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-24 10:22:30 (8712): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-24 10:22:33 (8712): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 10:22:33 (8712): Guest Log:  *** Starting ATLAS job. (PandaID=6524021247 taskID=43205094) ***
2025-02-24 12:04:23 (8712): Status Report: Elapsed Time: '6000.560839'
2025-02-24 12:04:23 (8712): Status Report: CPU Time: '8519.296875'
2025-02-24 13:55:10 (8712): Status Report: Elapsed Time: '12001.350855'
2025-02-24 13:55:10 (8712): Status Report: CPU Time: '34953.281250'
2025-02-24 15:47:01 (8712): Status Report: Elapsed Time: '18001.410654'
2025-02-24 15:47:01 (8712): Status Report: CPU Time: '61633.203125'
2025-02-24 17:33:42 (8712): Status Report: Elapsed Time: '24003.166269'
2025-02-24 17:33:44 (8712): Status Report: CPU Time: '87018.218750'
2025-02-24 17:54:20 (8712): Guest Log:  *** Job finished ***
2025-02-24 17:54:20 (8712): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:05,720 | INFO     | [data] copytool_out thread has finished
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:05,772 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:09,791 | INFO     | [data] queue_monitor thread has finished
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:10,209 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139668497717056)>', '<ExcThread(monitor, started 139667731097344)>']
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:10,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:10,882 | INFO     | [monitor] control thread has ended
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,222 | INFO     | all workflow threads have been joined
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,223 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,224 | INFO     | traces error code: 0
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,224 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,314 [wrapper] ==== pilot stdout END ====
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,319 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,324 [wrapper] pilotpid: 6240
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:15,330 [wrapper] Pilot exit status: 0
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,312 [wrapper] pandaids: 6524021247
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,366 [wrapper] cleanup supervisor_pilot  2882 6241
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,374 [wrapper] Test setup, not cleaning
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,385 [wrapper] apfmon messages muted
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,390 [wrapper] ==== wrapper stdout END ====
2025-02-24 17:54:20 (8712): Guest Log: 2025-02-24 23:54:17,395 [wrapper] ==== wrapper stderr END ====
2025-02-24 17:54:20 (8712): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 17:54:20 (8712): Guest Log:     "exeErrorCode": 0,
2025-02-24 17:54:20 (8712): Guest Log:     "exeErrorDiag": "",
2025-02-24 17:54:20 (8712): Guest Log:     "pilotErrorCode": 0,
2025-02-24 17:54:20 (8712): Guest Log:     "pilotErrorDiag": "",
2025-02-24 17:54:20 (8712): Guest Log:  *** Listing of results directory ***
2025-02-24 17:54:20 (8712): Guest Log: total 324676
2025-02-24 17:54:20 (8712): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 23 07:58 runpilot2-wrapper.sh
2025-02-24 17:54:20 (8712): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 23 07:58 pilot3.tar.gz
2025-02-24 17:54:20 (8712): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 23 07:58 queuedata.json
2025-02-24 17:54:20 (8712): Guest Log: -rwxr-xr-x. 1 atlas atlas      9383 Feb 24 16:22 init_data.xml
2025-02-24 17:54:20 (8712): Guest Log: -rwxr-xr-x. 1 atlas atlas    503554 Feb 24 16:22 input.tar.gz
2025-02-24 17:54:20 (8712): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 16:22 start_atlas.sh
2025-02-24 17:54:20 (8712): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 16:22 EVNT.43092757._001618.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 17:54:20 (8712): Guest Log: -rw-r--r--. 1 atlas atlas      2544 Feb 24 16:22 pandaJob.out
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 16:24 setup.sh.local
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas    987749 Feb 24 16:39 agis_schedconf.cvmfs.json
2025-02-24 17:54:20 (8712): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 16:39 pilot3
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas 323695574 Feb 24 23:52 HITS.43205094._038589.pool.root.1
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas      1030 Feb 24 23:53 memory_monitor_summary.json
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 23:53 agis_ddmendpoints.agis.ALL.json
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas    407522 Feb 24 23:53 log.43205094._038589.job.log.tgz.1
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas        96 Feb 24 23:53 pilot_heartbeat.json
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas      7710 Feb 24 23:54 heartbeat.json
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas      4591 Feb 24 23:54 pilotlog.txt
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas   2108121 Feb 24 23:54 log.43205094._038589.job.log.1
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 23:54 output.list
2025-02-24 17:54:20 (8712): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 23:54 runtime_log
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas   2539520 Feb 24 23:54 result.tar.gz
2025-02-24 17:54:20 (8712): Guest Log: -rw-r--r--. 1 atlas atlas     10947 Feb 24 23:54 runtime_log.err
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas       664 Feb 24 23:54 9vCNDmw3L66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmFoeKDmh6Ccgm.diag
2025-02-24 17:54:20 (8712): Guest Log: Looking for outputfile HITS.43205094._038589.pool.root.1
2025-02-24 17:54:20 (8712): Guest Log: HITS file was successfully produced
2025-02-24 17:54:20 (8712): Guest Log: -rw-------. 1 atlas atlas 323695574 Feb 24 23:52 /home/atlas/RunAtlas/HITS.43205094._038589.pool.root.1
2025-02-24 17:54:21 (8712): Guest Log: Successfully finished the ATLAS job!
2025-02-24 17:54:21 (8712): Guest Log: Copying the results back to the shared directory!
2025-02-24 17:54:21 (8712): Guest Log:  *** Contents of shared directory: ***
2025-02-24 17:54:21 (8712): Guest Log: total 653472
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root 342377507 Feb 24 16:20 ATLAS.root_0
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root 323695574 Feb 24 23:54 HITS.pool.root.1
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root      9383 Feb 24 16:20 init_data.xml
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root    503554 Feb 23 19:24 input.tar.gz
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root   2539520 Feb 24 23:54 result.tar.gz
2025-02-24 17:54:21 (8712): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 19:24 start_atlas.sh
2025-02-24 17:54:21 (8712): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 17:54:21 (8712): VM Completion File Detected.
2025-02-24 17:54:21 (8712): Powering off VM.
2025-02-24 17:54:22 (8712): Successfully stopped VM.
2025-02-24 17:54:22 (8712): Deregistering VM. (boinc_f67d671e6c8db47c, slot#0)
2025-02-24 17:54:22 (8712): Removing network bandwidth throttle group from VM.
2025-02-24 17:54:22 (8712): Removing VM from VirtualBox.
17:54:27 (8712): called boinc_finish(0)

</stderr_txt>
]]>

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