Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 19:44:44 (3168): Detected: vboxwrapper 26206
2025-02-23 19:44:44 (3168): Detected: BOINC client v8.0.4
2025-02-23 19:44:45 (3168): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-23 19:44:45 (3168): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 19:44:46 (3168): Create VM. (boinc_0a57a04cd5358635, slot#0)
2025-02-23 19:44:47 (3168): Setting Memory Size for VM. (4400MB)
2025-02-23 19:44:47 (3168): Setting CPU Count for VM. (4)
2025-02-23 19:44:47 (3168): Setting Chipset Options for VM.
2025-02-23 19:44:48 (3168): Setting Graphics Controller Options for VM.
2025-02-23 19:44:48 (3168): Setting Boot Options for VM.
2025-02-23 19:44:48 (3168): Setting Network Configuration for NAT.
2025-02-23 19:44:48 (3168): Enabling VM Network Access.
2025-02-23 19:44:49 (3168): Disabling USB Support for VM.
2025-02-23 19:44:49 (3168): Disabling COM Port Support for VM.
2025-02-23 19:44:49 (3168): Disabling LPT Port Support for VM.
2025-02-23 19:44:50 (3168): Disabling Audio Support for VM.
2025-02-23 19:44:50 (3168): Disabling Clipboard Support for VM.
2025-02-23 19:44:50 (3168): Disabling Drag and Drop Support for VM.
2025-02-23 19:44:51 (3168): Adding storage controller(s) to VM.
2025-02-23 19:44:51 (3168): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 19:44:55 (3168): Adding VirtualBox Guest Additions to VM.
2025-02-23 19:44:55 (3168): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 19:44:56 (3168): forwarding host port 54419 to guest port 80
2025-02-23 19:44:57 (3168): Enabling remote desktop for VM.
2025-02-23 19:44:57 (3168): Required extension pack not installed, remote desktop not enabled.
2025-02-23 19:44:57 (3168): Enabling shared directory for VM.
2025-02-23 19:44:58 (3168): Starting VM using VBoxManage interface. (boinc_0a57a04cd5358635, slot#0)
2025-02-23 19:45:06 (3168): Successfully started VM. (PID = '3792')
2025-02-23 19:45:06 (3168): Reporting VM Process ID to BOINC.
2025-02-23 19:45:06 (3168): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-23 19:45:06 (3168): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 19:45:06 (3168): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 19:45:06 (3168): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 19:45:06 (3168): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 19:45:06 (3168): Detected: Web Application Enabled (http://localhost:54419)
2025-02-23 19:45:06 (3168): Preference change detected
2025-02-23 19:45:06 (3168): Setting CPU throttle for VM. (100%)
2025-02-23 19:45:07 (3168): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 19:45:09 (3168): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 19:45:09 (3168): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 19:45:11 (3168): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 19:45:11 (3168): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 19:45:11 (3168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 19:45:19 (3168): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 19:45:19 (3168): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 19:45:26 (3168): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000201 main     Log opened 2025-02-23T19:45:23.956243000Z
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000346 main     OS Product: Linux
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000431 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000499 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000541 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000543 main     Process ID: 1268
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.000543 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 19:45:26 (3168): Guest Log: 00:00:00.001784 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 19:45:26 (3168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 19:45:26 (3168): Guest Log: [INFO] Mounting shared directory
2025-02-23 19:45:26 (3168): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 19:45:28 (3168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 19:45:28 (3168): Guest Log: [INFO] Detected branch: prod
2025-02-23 19:45:28 (3168): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 19:45:28 (3168): Guest Log: Copying input files
2025-02-23 19:45:31 (3168): Guest Log: Copied input files into RunAtlas.
2025-02-23 19:45:31 (3168): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 19:45:31 (3168): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 19:45:31 (3168): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 19:45:31 (3168): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 19:45:36 (3168): Guest Log: 00:00:10.005498 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 510 199 000ns (GuestNow=1 740 336 335 449 637 000 ns GuestLast=1 740 339 923 959 836 000 ns fSetTimeLastLoop=true )
2025-02-23 19:45:39 (3168): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 19:45:39 (3168): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 19:45:39 (3168): Guest Log: 2.6.3.0 1542 0 30104 142984 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 19:45:43 (3168): Guest Log: copied the webapp to /var/www
2025-02-23 19:45:43 (3168): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-23 19:45:43 (3168): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-23 19:45:43 (3168): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 19:45:43 (3168): Guest Log:  *** Starting ATLAS job. (PandaID=6524862542 taskID=43205094) ***
2025-02-23 19:53:39 (3168): Guest Log:  *** Job finished ***
2025-02-23 19:53:39 (3168): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:27,665 | INFO     | [payload] validate_pre thread has finished
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:27,721 | INFO     | [job] control thread has finished
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:29,211 | INFO     | [data] queue_monitor thread has finished
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:30,827 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140617990391616)>', '<ExcThread(monitor, started 140617388631808)>']
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:31,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:31,207 | INFO     | [monitor] control thread has ended
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,833 | INFO     | all workflow threads have been joined
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,834 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,834 | INFO     | traces error code: 0
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,983 [wrapper] ==== pilot stdout END ====
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:35,995 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,003 [wrapper] pilotpid: 5868
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,012 [wrapper] Pilot exit status: 0
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,137 [wrapper] pandaids: 6524862542
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,189 [wrapper] cleanup supervisor_pilot  5874 5869
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,198 [wrapper] Test setup, not cleaning
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,213 [wrapper] apfmon messages muted
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,221 [wrapper] ==== wrapper stdout END ====
2025-02-23 19:53:39 (3168): Guest Log: 2025-02-23 18:53:36,229 [wrapper] ==== wrapper stderr END ====
2025-02-23 19:53:39 (3168): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 19:53:39 (3168): Guest Log:     "exeErrorCode": 65,
2025-02-23 19:53:39 (3168): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-02-23 19:53:39 (3168): Guest Log:     "pilotErrorCode": 1305,
2025-02-23 19:53:39 (3168): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 18:50:03,838 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-02-23 19:53:39 (3168): Guest Log:  *** Listing of results directory ***
2025-02-23 19:53:39 (3168): Guest Log: total 3992
2025-02-23 19:53:39 (3168): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 23 12:13 pilot3.tar.gz
2025-02-23 19:53:39 (3168): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 23 12:23 queuedata.json
2025-02-23 19:53:39 (3168): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 23 12:24 runpilot2-wrapper.sh
2025-02-23 19:53:39 (3168): Guest Log: -rwxr-xr-x. 1 atlas atlas    8703 Feb 23 18:45 init_data.xml
2025-02-23 19:53:39 (3168): Guest Log: -rwxr-xr-x. 1 atlas atlas  503558 Feb 23 18:45 input.tar.gz
2025-02-23 19:53:39 (3168): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 23 18:45 start_atlas.sh
2025-02-23 19:53:39 (3168): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 18:45 EVNT.43092757._001644.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 19:53:39 (3168): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Feb 23 18:45 pandaJob.out
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 18:45 setup.sh.local
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas  987744 Feb 23 18:46 agis_schedconf.cvmfs.json
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 18:46 agis_ddmendpoints.agis.ALL.json
2025-02-23 19:53:39 (3168): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 18:46 pilot3
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas   46536 Feb 23 18:51 log.43205094._039319.job.log.tgz.1
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 18:52 pilot_heartbeat.json
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas    8035 Feb 23 18:53 heartbeat.json
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas    4398 Feb 23 18:53 pilotlog.txt
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas  133186 Feb 23 18:53 log.43205094._039319.job.log.1
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 18:53 output.list
2025-02-23 19:53:39 (3168): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 18:53 runtime_log
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas  194560 Feb 23 18:53 result.tar.gz
2025-02-23 19:53:39 (3168): Guest Log: -rw-------. 1 atlas atlas     645 Feb 23 18:53 uNXKDmvCQ66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmoUvKDmM2sGBo.diag
2025-02-23 19:53:39 (3168): Guest Log: -rw-r--r--. 1 atlas atlas   10794 Feb 23 18:53 runtime_log.err
2025-02-23 19:53:39 (3168): Guest Log: Looking for outputfile HITS.43205094._039319.pool.root.1
2025-02-23 19:53:39 (3168): Guest Log: No HITS file was produced
2025-02-23 19:53:39 (3168): Guest Log: Successfully finished the ATLAS job!
2025-02-23 19:53:39 (3168): Guest Log: Copying the results back to the shared directory!
2025-02-23 19:53:39 (3168): Guest Log:  *** Contents of shared directory: ***
2025-02-23 19:53:39 (3168): Guest Log: total 338176
2025-02-23 19:53:39 (3168): Guest Log: -rwxrwxrwx. 1 root root 345555245 Feb 23 18:44 ATLAS.root_0
2025-02-23 19:53:39 (3168): Guest Log: -rwxrwxrwx. 1 root root      8703 Feb 23 18:44 init_data.xml
2025-02-23 19:53:39 (3168): Guest Log: -rwxrwxrwx. 1 root root    503558 Feb 23 18:02 input.tar.gz
2025-02-23 19:53:39 (3168): Guest Log: -rwxrwxrwx. 1 root root    194560 Feb 23 18:53 result.tar.gz
2025-02-23 19:53:39 (3168): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 18:02 start_atlas.sh
2025-02-23 19:53:39 (3168): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 19:53:39 (3168): VM Completion File Detected.
2025-02-23 19:53:39 (3168): Powering off VM.
2025-02-23 19:53:44 (3168): Successfully stopped VM.
2025-02-23 19:53:44 (3168): Deregistering VM. (boinc_0a57a04cd5358635, slot#0)
2025-02-23 19:53:45 (3168): Removing network bandwidth throttle group from VM.
2025-02-23 19:53:45 (3168): Removing VM from VirtualBox.
19:53:50 (3168): called boinc_finish(0)

</stderr_txt>
]]>

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