Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 02:37:27 (8496): Detected: vboxwrapper 26206
2025-02-24 02:37:27 (8496): Detected: BOINC client v8.0.2
2025-02-24 02:37:28 (8496): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-24 02:37:28 (8496): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 02:37:29 (8496): Create VM. (boinc_5422eddcb83d8185, slot#0)
2025-02-24 02:37:29 (8496): Setting Memory Size for VM. (5400MB)
2025-02-24 02:37:29 (8496): Setting CPU Count for VM. (2)
2025-02-24 02:37:30 (8496): Setting Chipset Options for VM.
2025-02-24 02:37:30 (8496): Setting Graphics Controller Options for VM.
2025-02-24 02:37:30 (8496): Setting Boot Options for VM.
2025-02-24 02:37:30 (8496): Setting Network Configuration for NAT.
2025-02-24 02:37:31 (8496): Enabling VM Network Access.
2025-02-24 02:37:31 (8496): Disabling USB Support for VM.
2025-02-24 02:37:31 (8496): Disabling COM Port Support for VM.
2025-02-24 02:37:31 (8496): Disabling LPT Port Support for VM.
2025-02-24 02:37:32 (8496): Disabling Audio Support for VM.
2025-02-24 02:37:32 (8496): Disabling Clipboard Support for VM.
2025-02-24 02:37:32 (8496): Disabling Drag and Drop Support for VM.
2025-02-24 02:37:32 (8496): Adding storage controller(s) to VM.
2025-02-24 02:37:33 (8496): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 02:37:33 (8496): Adding VirtualBox Guest Additions to VM.
2025-02-24 02:37:33 (8496): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 02:37:34 (8496): forwarding host port 51758 to guest port 80
2025-02-24 02:37:34 (8496): Enabling remote desktop for VM.
2025-02-24 02:37:34 (8496): Enabling shared directory for VM.
2025-02-24 02:37:35 (8496): Starting VM using VBoxManage interface. (boinc_5422eddcb83d8185, slot#0)
2025-02-24 02:37:41 (8496): Successfully started VM. (PID = '14912')
2025-02-24 02:37:41 (8496): Reporting VM Process ID to BOINC.
2025-02-24 02:37:41 (8496): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-24 02:37:41 (8496): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 02:37:41 (8496): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 02:37:41 (8496): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 02:37:41 (8496): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 02:37:41 (8496): Detected: Web Application Enabled (http://localhost:51758)
2025-02-24 02:37:41 (8496): Detected: Remote Desktop Enabled (localhost:51759)
2025-02-24 02:37:41 (8496): Preference change detected
2025-02-24 02:37:41 (8496): Setting CPU throttle for VM. (100%)
2025-02-24 02:37:41 (8496): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 02:37:43 (8496): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 02:37:43 (8496): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 02:37:45 (8496): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 02:37:45 (8496): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 02:37:45 (8496): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 02:37:52 (8496): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 02:37:52 (8496): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 02:37:57 (8496): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000182 main     Log opened 2025-02-24T02:37:55.301623000Z
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000281 main     OS Product: Linux
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000300 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000317 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000335 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000336 main     Process ID: 1298
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.000336 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 02:37:57 (8496): Guest Log: 00:00:00.001194 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 02:37:57 (8496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 02:37:57 (8496): Guest Log: [INFO] Mounting shared directory
2025-02-24 02:37:57 (8496): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 02:38:01 (8496): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 02:38:01 (8496): Guest Log: [INFO] Detected branch: prod
2025-02-24 02:38:02 (8496): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 02:38:02 (8496): Guest Log: Copying input files
2025-02-24 02:38:03 (8496): Guest Log: Copied input files into RunAtlas.
2025-02-24 02:38:03 (8496): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-02-24 02:38:07 (8496): Guest Log: 00:00:10.008128 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 657 363 000ns (GuestNow=1 740 361 086 651 075 000 ns GuestLast=1 740 364 675 308 438 000 ns fSetTimeLastLoop=true )
2025-02-24 02:38:15 (8496): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 02:38:15 (8496): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 02:38:15 (8496): Guest Log: 2.6.3.0 1573 0 29588 142994 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-02-24 02:38:15 (8496): Guest Log: copied the webapp to /var/www
2025-02-24 02:38:15 (8496): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-24 02:38:15 (8496): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-24 02:38:15 (8496): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 02:38:15 (8496): Guest Log:  *** Starting ATLAS job. (PandaID=6523019849 taskID=43078919) ***
2025-02-24 04:17:52 (8496): Status Report: Elapsed Time: '6000.000000'
2025-02-24 04:17:52 (8496): Status Report: CPU Time: '10492.078125'
2025-02-24 05:57:56 (8496): Status Report: Elapsed Time: '12000.000000'
2025-02-24 05:57:56 (8496): Status Report: CPU Time: '22429.312500'
2025-02-24 07:37:59 (8496): Status Report: Elapsed Time: '18000.000000'
2025-02-24 07:37:59 (8496): Status Report: CPU Time: '34365.484375'
2025-02-24 09:18:02 (8496): Status Report: Elapsed Time: '24000.000000'
2025-02-24 09:18:02 (8496): Status Report: CPU Time: '46307.593750'
2025-02-24 10:58:06 (8496): Status Report: Elapsed Time: '30000.000000'
2025-02-24 10:58:06 (8496): Status Report: CPU Time: '58247.093750'
2025-02-24 12:38:09 (8496): Status Report: Elapsed Time: '36000.000000'
2025-02-24 12:38:09 (8496): Status Report: CPU Time: '70185.765625'
2025-02-24 13:20:16 (8496): Guest Log:  *** Job finished ***
2025-02-24 13:20:16 (8496): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:51,611 | INFO     | [payload] execute_payloads thread has finished
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:52,108 | INFO     | [data] copytool_out thread has finished
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:54,206 | INFO     | [data] queue_monitor thread has finished
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:55,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851561625408)>', '<ExcThread(monitor, started 139850896365312)>']
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:56,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:19:56,690 | INFO     | [monitor] control thread has ended
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:00,905 | INFO     | all workflow threads have been joined
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:00,905 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:00,906 | INFO     | traces error code: 0
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:00,906 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,021 [wrapper] ==== pilot stdout END ====
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,025 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,029 [wrapper] pilotpid: 5880
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,033 [wrapper] Pilot exit status: 0
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,094 [wrapper] pandaids: 6523019849
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,115 [wrapper] cleanup supervisor_pilot 26414 5881
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,119 [wrapper] Test setup, not cleaning
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,128 [wrapper] apfmon messages muted
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,132 [wrapper] ==== wrapper stdout END ====
2025-02-24 13:20:16 (8496): Guest Log: 2025-02-24 12:20:01,136 [wrapper] ==== wrapper stderr END ====
2025-02-24 13:20:16 (8496): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 13:20:16 (8496): Guest Log:     "exeErrorCode": 0,
2025-02-24 13:20:16 (8496): Guest Log:     "exeErrorDiag": "",
2025-02-24 13:20:16 (8496): Guest Log:     "pilotErrorCode": 0,
2025-02-24 13:20:16 (8496): Guest Log:     "pilotErrorDiag": "",
2025-02-24 13:20:16 (8496): Guest Log:  *** Listing of results directory ***
2025-02-24 13:20:16 (8496): Guest Log: total 328384
2025-02-24 13:20:16 (8496): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 12:44 pilot3.tar.gz
2025-02-24 13:20:16 (8496): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 12:45 runpilot2-wrapper.sh
2025-02-24 13:20:16 (8496): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 12:45 queuedata.json
2025-02-24 13:20:16 (8496): Guest Log: -rwxr-xr-x. 1 atlas atlas      9108 Feb 24 01:38 init_data.xml
2025-02-24 13:20:16 (8496): Guest Log: -rwxr-xr-x. 1 atlas atlas    503558 Feb 24 01:38 input.tar.gz
2025-02-24 13:20:16 (8496): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 01:38 start_atlas.sh
2025-02-24 13:20:16 (8496): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 01:38 EVNT.43078917._000231.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 13:20:16 (8496): Guest Log: -rw-r--r--. 1 atlas atlas      2542 Feb 24 01:38 pandaJob.out
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas       459 Feb 24 01:38 setup.sh.local
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 24 01:39 agis_schedconf.cvmfs.json
2025-02-24 13:20:16 (8496): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 01:39 pilot3
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas 321132727 Feb 24 12:19 HITS.43078919._087537.pool.root.1
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas      1026 Feb 24 12:19 memory_monitor_summary.json
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 12:19 agis_ddmendpoints.agis.ALL.json
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas    579098 Feb 24 12:19 log.43078919._087537.job.log.tgz.1
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 12:19 pilot_heartbeat.json
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas      7731 Feb 24 12:19 heartbeat.json
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 24 12:20 pilotlog.txt
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas   5118447 Feb 24 12:20 log.43078919._087537.job.log.1
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 12:20 output.list
2025-02-24 13:20:16 (8496): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 12:20 runtime_log
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas   5713920 Feb 24 12:20 result.tar.gz
2025-02-24 13:20:16 (8496): Guest Log: -rw-r--r--. 1 atlas atlas     11323 Feb 24 12:20 runtime_log.err
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas       667 Feb 24 12:20 MVXNDmb3356n9Rq4apOajLDm4fhM0noT9bVoFjIUDmcEeKDm2sQ4Cn.diag
2025-02-24 13:20:16 (8496): Guest Log: Looking for outputfile HITS.43078919._087537.pool.root.1
2025-02-24 13:20:16 (8496): Guest Log: HITS file was successfully produced
2025-02-24 13:20:16 (8496): Guest Log: -rw-------. 1 atlas atlas 321132727 Feb 24 12:19 /home/atlas/RunAtlas/HITS.43078919._087537.pool.root.1
2025-02-24 13:20:17 (8496): Guest Log: Successfully finished the ATLAS job!
2025-02-24 13:20:17 (8496): Guest Log: Copying the results back to the shared directory!
2025-02-24 13:20:17 (8496): Guest Log:  *** Contents of shared directory: ***
2025-02-24 13:20:17 (8496): Guest Log: total 652724
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root 341001252 Feb 24 01:37 ATLAS.root_0
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root 321132727 Feb 24  2025 HITS.pool.root.1
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root      9108 Feb 24 01:37 init_data.xml
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root    503558 Feb 23 15:02 input.tar.gz
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root   5713920 Feb 24  2025 result.tar.gz
2025-02-24 13:20:17 (8496): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 15:02 start_atlas.sh
2025-02-24 13:20:17 (8496): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 13:20:17 (8496): VM Completion File Detected.
2025-02-24 13:20:17 (8496): Powering off VM.
2025-02-24 13:20:18 (8496): Successfully stopped VM.
2025-02-24 13:20:18 (8496): Deregistering VM. (boinc_5422eddcb83d8185, slot#0)
2025-02-24 13:20:18 (8496): Removing network bandwidth throttle group from VM.
2025-02-24 13:20:18 (8496): Removing VM from VirtualBox.
13:20:23 (8496): called boinc_finish(0)

</stderr_txt>
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